DY260125
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1) HSP 1 Score: 189.119 bits (479), Expect = 4.003e-47 Identity = 109/217 (50.23%), Postives = 130/217 (59.91%), Query Frame = 1 Query: 28 SKRLGFSTVLSRGPFVSHGVSVSTKPI---GWNLGFFVNAQVKDSFVVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFQ 669 SK LGFS+ LS P + +SVS + G GF ++ +V++ F+VR RKPR+KLGD+MGILN++AIE +E RP+P+IRTGD+VEIKLEVPEN+RRLSIYKGIVMSRQN VEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTF+ Sbjct: 23 SKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSLDTRVRNEFIVRAEEGNTEAESEEFVAEIADTEGNVEEVVEAKPT--------------RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 225
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 7.066e-44 Identity = 90/122 (73.77%), Postives = 100/122 (81.97%), Query Frame = 1 Query: 304 PRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFQ 669 P K RVKLGDIMG+LNK+AIE +E+ RP+P +RTGD+VEIKLEVPEN+RRLSIYKGIVMSRQN VEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTF+ Sbjct: 108 PWKTRVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 229
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2) HSP 1 Score: 175.252 bits (443), Expect = 5.982e-43 Identity = 87/122 (71.31%), Postives = 100/122 (81.97%), Query Frame = 1 Query: 304 PRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFQ 669 PR+ RVKLGDIMGILNK+A+ A+E RP+P IRTGD+V+I+LEVPEN+RRLS+YKGIV+SRQN VEIVFPLYSPNIKEIKVVSHRKVR+ARLYYLRDKLPRLSTF+ Sbjct: 112 PRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 233
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_MAGSA (50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplS PE=3 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 2.896e-13 Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = 1 Query: 331 DIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 645 +I+ L K IE ++R +P GD +++ ++V E NR R+ Y+G+ ++R+N VE +FPLYSPNI I+VV VRRA+LYYLRD+ Sbjct: 3 NIIEQLEKEQIEKLTADRGVPSFAPGDTLKVNVKVIEGNRERVQAYEGVCIARKNDGLNSSFVVRKISYGEGVERIFPLYSPNIASIEVVRRGDVRRAKLYYLRDR 108
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_MOOTA (50S ribosomal protein L19 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplS PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 3.782e-13 Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1 Query: 361 IEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKL 648 +E + IPD R GD V + ++V E NR R+ I++G+V+ R+ VE +FPL+SP ++ I+VV H KVRRA+LYYLR+++ Sbjct: 7 LEKEQLRTDIPDFRPGDTVRVHVKVVEGNRERIQIFEGVVIGRRGRGINETFTVRRVSYGVAVERIFPLHSPRLERIEVVRHGKVRRAKLYYLRERV 103
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_ALKMQ (50S ribosomal protein L19 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplS PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 6.451e-13 Identity = 35/99 (35.35%), Postives = 61/99 (61.62%), Query Frame = 1 Query: 355 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKL 648 + I+A++ ++ I D TGD +++ + + E R R+ +++GIV+ RQ VE FP++SP I++I++V H KVRRAR++YLRD++ Sbjct: 5 KGIDAAQLKKDIIDFNTGDTIKVHVRIKEGTRERIQVFEGIVIKRQGGGIAETFTVRRISYGVGVERTFPVHSPKIEKIEIVKHGKVRRARIFYLRDRI 103
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_CORJK (50S ribosomal protein L19 OS=Corynebacterium jeikeium (strain K411) GN=rplS PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.437e-12 Identity = 40/104 (38.46%), Postives = 64/104 (61.54%), Query Frame = 1 Query: 337 MGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 645 M IL+K ++A++ IP+ R GD +++ ++V E ++ RL +++G+V+ RQN VE FP++SPNI I V+S KVRRA+LYYLR++ Sbjct: 1 MHILDK--VDAAQLRDDIPEFRAGDTLDVHVKVIEGSKSRLQVFRGVVIRRQNSGIRETFTIRKVSFGIGVERTFPVHSPNIDRIDVLSRGKVRRAKLYYLRER 102
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_LACLS (50S ribosomal protein L19 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rplS PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.451e-12 Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 1 Query: 358 AIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 639 +I A++ IPD R GD V + +V E R R+ I++G+V++R+N VE +FP+++P +++I+V+ H KVRRA+LYYLR Sbjct: 6 SINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEKIEVIRHGKVRRAKLYYLR 100
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_LACLM (50S ribosomal protein L19 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rplS PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.451e-12 Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 1 Query: 358 AIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 639 +I A++ IPD R GD V + +V E R R+ I++G+V++R+N VE +FP+++P +++I+V+ H KVRRA+LYYLR Sbjct: 6 SINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEKIEVIRHGKVRRAKLYYLR 100
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_BEII9 (50S ribosomal protein L19 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplS PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 2.451e-12 Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 1 Query: 376 SERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 645 ++RPIP + GD V + ++V E R R+ Y+G+ ++R VE VFP+YSPNI IKVV KVRRA+LYYLRD+ Sbjct: 17 AKRPIPAFQPGDTVIVNVKVKEGERTRVQAYEGVCIARNGGGLNESFTVRKISYGEGVERVFPIYSPNIDSIKVVRRGKVRRAKLYYLRDR 107 The following BLAST results are available for this feature:
BLAST of DY260125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 47
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Sequences
The
following sequences are available for this feature:
EST sequence >DY260125 ID=DY260125; Name=DY260125; organism=Citrus clementina; type=EST; length=1125bpback to top |