DY260125

Overview
NameDY260125
Unique NameDY260125
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1125
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260125_ssr283 microsatellite DY260125_ssr283:283..294. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260125_ssr782 microsatellite DY260125_ssr782:782..796. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig669 contig Ccv1_Contig669:42..1166. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RK191_ARATH (50S ribosomal protein L19-1, chloroplastic OS=Arabidopsis thaliana GN=At4g17560 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 4.003e-47
Identity = 109/217 (50.23%), Postives = 130/217 (59.91%), Query Frame = 1
Query:   28 SKRLGFSTVLSRGPFVSHGVSVSTKPI---GWNLGFFVNAQVKDSFVVRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFQ 669
            SK LGFS+ LS  P +   +SVS   +   G   GF ++ +V++ F+VR                                               RKPR+KLGD+MGILN++AIE +E  RP+P+IRTGD+VEIKLEVPEN+RRLSIYKGIVMSRQN                 VEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTF+
Sbjct:   23 SKNLGFSSFLSCAPSMDSRISVSRLSLNHPGSKFGFSLDTRVRNEFIVRAEEGNTEAESEEFVAEIADTEGNVEEVVEAKPT--------------RKPRIKLGDVMGILNQKAIEVAEKVRPVPEIRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 225          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RK192_ARATH (50S ribosomal protein L19-2, chloroplastic OS=Arabidopsis thaliana GN=At5g47190 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 7.066e-44
Identity = 90/122 (73.77%), Postives = 100/122 (81.97%), Query Frame = 1
Query:  304 PRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFQ 669
            P K RVKLGDIMG+LNK+AIE +E+ RP+P +RTGD+VEIKLEVPEN+RRLSIYKGIVMSRQN                 VEIVFP+YSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTF+
Sbjct:  108 PWKTRVKLGDIMGLLNKKAIEVAETVRPVPGLRTGDIVEIKLEVPENKRRLSIYKGIVMSRQNAGIHTTIRIRRIIAGIGVEIVFPIYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFK 229          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RK19_SPIOL (50S ribosomal protein L19, chloroplastic OS=Spinacia oleracea GN=RPL19 PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 5.982e-43
Identity = 87/122 (71.31%), Postives = 100/122 (81.97%), Query Frame = 1
Query:  304 PRKPRVKLGDIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPENRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKLPRLSTFQ 669
            PR+ RVKLGDIMGILNK+A+ A+E  RP+P IRTGD+V+I+LEVPEN+RRLS+YKGIV+SRQN                 VEIVFPLYSPNIKEIKVVSHRKVR+ARLYYLRDKLPRLSTF+
Sbjct:  112 PRQQRVKLGDIMGILNKKAVHAAEELRPVPGIRTGDIVQIRLEVPENKRRLSVYKGIVISRQNAGIHTTIRIRRIIAGVGVEIVFPLYSPNIKEIKVVSHRKVRKARLYYLRDKLPRLSTFK 233          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_MAGSA (50S ribosomal protein L19 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.896e-13
Identity = 41/106 (38.68%), Postives = 61/106 (57.55%), Query Frame = 1
Query:  331 DIMGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 645
            +I+  L K  IE   ++R +P    GD +++ ++V E NR R+  Y+G+ ++R+N                 VE +FPLYSPNI  I+VV    VRRA+LYYLRD+
Sbjct:    3 NIIEQLEKEQIEKLTADRGVPSFAPGDTLKVNVKVIEGNRERVQAYEGVCIARKNDGLNSSFVVRKISYGEGVERIFPLYSPNIASIEVVRRGDVRRAKLYYLRDR 108          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_MOOTA (50S ribosomal protein L19 OS=Moorella thermoacetica (strain ATCC 39073) GN=rplS PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.782e-13
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1
Query:  361 IEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKL 648
            +E  +    IPD R GD V + ++V E NR R+ I++G+V+ R+                  VE +FPL+SP ++ I+VV H KVRRA+LYYLR+++
Sbjct:    7 LEKEQLRTDIPDFRPGDTVRVHVKVVEGNRERIQIFEGVVIGRRGRGINETFTVRRVSYGVAVERIFPLHSPRLERIEVVRHGKVRRAKLYYLRERV 103          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_ALKMQ (50S ribosomal protein L19 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplS PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 6.451e-13
Identity = 35/99 (35.35%), Postives = 61/99 (61.62%), Query Frame = 1
Query:  355 RAIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDKL 648
            + I+A++ ++ I D  TGD +++ + + E  R R+ +++GIV+ RQ                  VE  FP++SP I++I++V H KVRRAR++YLRD++
Sbjct:    5 KGIDAAQLKKDIIDFNTGDTIKVHVRIKEGTRERIQVFEGIVIKRQGGGIAETFTVRRISYGVGVERTFPVHSPKIEKIEIVKHGKVRRARIFYLRDRI 103          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_CORJK (50S ribosomal protein L19 OS=Corynebacterium jeikeium (strain K411) GN=rplS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.437e-12
Identity = 40/104 (38.46%), Postives = 64/104 (61.54%), Query Frame = 1
Query:  337 MGILNKRAIEASESERPIPDIRTGDVVEIKLEVPE-NRRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 645
            M IL+K  ++A++    IP+ R GD +++ ++V E ++ RL +++G+V+ RQN                 VE  FP++SPNI  I V+S  KVRRA+LYYLR++
Sbjct:    1 MHILDK--VDAAQLRDDIPEFRAGDTLDVHVKVIEGSKSRLQVFRGVVIRRQNSGIRETFTIRKVSFGIGVERTFPVHSPNIDRIDVLSRGKVRRAKLYYLRER 102          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_LACLS (50S ribosomal protein L19 OS=Lactococcus lactis subsp. cremoris (strain SK11) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.451e-12
Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  358 AIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 639
            +I A++    IPD R GD V +  +V E  R R+ I++G+V++R+N                 VE +FP+++P +++I+V+ H KVRRA+LYYLR
Sbjct:    6 SINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEKIEVIRHGKVRRAKLYYLR 100          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_LACLM (50S ribosomal protein L19 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.451e-12
Identity = 36/95 (37.89%), Postives = 58/95 (61.05%), Query Frame = 1
Query:  358 AIEASESERPIPDIRTGDVVEIKLEVPEN-RRRLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLR 639
            +I A++    IPD R GD V +  +V E  R R+ I++G+V++R+N                 VE +FP+++P +++I+V+ H KVRRA+LYYLR
Sbjct:    6 SINAAQLRTDIPDFRPGDTVRVHAKVVEGTRERIQIFEGVVIARKNSGINETYTVRKISNGVGVERIFPVHTPRVEKIEVIRHGKVRRAKLYYLR 100          
BLAST of DY260125 vs. ExPASy Swiss-Prot
Match: RL19_BEII9 (50S ribosomal protein L19 OS=Beijerinckia indica subsp. indica (strain ATCC 9039 / DSM 1715 / NCIB 8712) GN=rplS PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.451e-12
Identity = 39/91 (42.86%), Postives = 53/91 (58.24%), Query Frame = 1
Query:  376 SERPIPDIRTGDVVEIKLEVPENRR-RLSIYKGIVMSRQNXXXXXXXXXXXXXXXXXVEIVFPLYSPNIKEIKVVSHRKVRRARLYYLRDK 645
            ++RPIP  + GD V + ++V E  R R+  Y+G+ ++R                   VE VFP+YSPNI  IKVV   KVRRA+LYYLRD+
Sbjct:   17 AKRPIPAFQPGDTVIVNVKVKEGERTRVQAYEGVCIARNGGGLNESFTVRKISYGEGVERVFPIYSPNIDSIKVVRRGKVRRAKLYYLRDR 107          
The following BLAST results are available for this feature:
BLAST of DY260125 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 47
Match NameE-valueIdentityDescription
RK191_ARATH4.003e-4750.2350S ribosomal protein L19-1, chloroplastic OS=Arab... [more]
RK192_ARATH7.066e-4473.7750S ribosomal protein L19-2, chloroplastic OS=Arab... [more]
RK19_SPIOL5.982e-4371.3150S ribosomal protein L19, chloroplastic OS=Spinac... [more]
RL19_MAGSA2.896e-1338.6850S ribosomal protein L19 OS=Magnetospirillum magn... [more]
RL19_MOOTA3.782e-1339.1850S ribosomal protein L19 OS=Moorella thermoacetic... [more]
RL19_ALKMQ6.451e-1335.3550S ribosomal protein L19 OS=Alkaliphilus metallir... [more]
RL19_CORJK1.437e-1238.4650S ribosomal protein L19 OS=Corynebacterium jeike... [more]
RL19_LACLS2.451e-1237.8950S ribosomal protein L19 OS=Lactococcus lactis su... [more]
RL19_LACLM2.451e-1237.8950S ribosomal protein L19 OS=Lactococcus lactis su... [more]
RL19_BEII92.451e-1242.8650S ribosomal protein L19 OS=Beijerinckia indica s... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YG09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260125 ID=DY260125; Name=DY260125; organism=Citrus clementina; type=EST; length=1125bp
CAAGAAGTTCCACTCTTTTGCATTCCTTCAAAGAGGCTAGGGTTTTCAAC
AGTTCTTTCTCGCGGCCCCTTTGTGAGCCATGGGGTTTCAGTTTCAACGA
AGCCTATAGGGTGGAATTTGGGCTTTTTCGTAAATGCCCAAGTGAAAGAT
AGTTTTGTGGTTAGGGCGGAGTCAAACGAAGAAGCGGAAGCGAATGAGAG
TATTGAAGAGGAGCAAAACGAGGCCGTTCAAGCACAAGGTGATGTTGTGG
TAGCTGTAGAAGCTGAATCTGAGGATAAGGTTGAAGAAGAAGAAGTGAAA
GCACCCAGAAAGCCCAGGGTTAAACTTGGAGATATCATGGGGATATTGAA
TAAGAGGGCGATTGAGGCATCGGAGAGTGAAAGACCAATTCCAGATATTA
GGACGGGTGATGTTGTGGAGATTAAATTGGAAGTTCCTGAAAATAGGCGT
AGGTTGTCCATTTACAAAGGTATTGTTATGTCAAGGCAAAATGCTGGGAT
CCACACTACAATTCGAATTCGGAGGATTATTGCTGGCATAGGGGTTGAGA
TCGTATTCCCTCTTTATTCGCCAAACATCAAGGAGATAAAAGTTGTCTCC
CACAGGAAAGTGAGGAGGGCAAGGCTGTACTATCTTAGAGACAAGCTTCC
TAGACTCTCCACTTTCCAATGAAGAAGCCCGATGCTGCTGGTCTTCAGTT
GATTTTGCCTTCAAAGTGGTTTTCAGAATCCTAAAATGTTGTAAAAGCTG
TAATTTAATATTCCATTTTATCATTTTTCCCTTCCTTTCCTTTCCTTTTA
ATTTAGCCGGGGAAATTAATGGAACCTTAGATGAATACATGAACCTTTAC
CAGCTTCCAATTTACATTCCAAAAAAAAAAAAAAAAAAAAACCCCACTTT
TCTTGTAAAAAGTTGGCCATTAAAAAAAAGCACTTGGTTATCAATTTGGT
TGGCCACAAAAAGGGTCCCCATCACGTTAAAAAAAAAACCCTTATTTTCC
CCCTCCCCCCCGAAATCCCCCCCCAAAAGGAGTTCCATAATACCAGGGGC
CCAAACCGGTTTTCCCGGGCACCCCCCCGGCCCCCCGGGCCCCCCAAAAT
TCTCCTGAAGTGTTTTACCTTGTCC
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