DY260126

Overview
NameDY260126
Unique NameDY260126
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1150
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14920 contig Ccv1_Contig14920:20..1169. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY260126 vs. ExPASy Swiss-Prot
Match: HMGL_IPONI (HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.250e-11
Identity = 38/80 (47.50%), Postives = 49/80 (61.25%), Query Frame = 3 
Query:  222 RKTFKKENPNXXXXXXXXXXXXXXXXSMSPAEKAPYESKAEKLKSEYGKKMNAYNKKQDG----DEASDKSKSEVNDEDE 449
            RKT+K+++PN                 ++ AEKAP+ SKAEK K EY K + AYNKKQ      +E SDKS+SEVND+DE
Sbjct:   51 RKTYKEKHPNNKSVAVVGKAGGDKWKQLTAAEKAPFISKAEKRKQEYEKNLQAYNKKQAAGAAEEEESDKSRSEVNDDDE 130
The following BLAST results are available for this feature:
BLAST of DY260126 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
HMGL_IPONI1.250e-1147.50HMG1/2-like protein OS=Ipomoea nil PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YG10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260126 ID=DY260126; Name=DY260126; organism=Citrus clementina; type=EST; length=1150bp
TTGTCTAGTTCCCTTGAAGGGTGCGAAGGGTAAAGGTGCAGCTAGAGTCT
CACAGGAAGCTTTGAAGCCAAATGACAGAAAGGTTGGTAAGCGGAAAGCT
GCTACTGCTAAGCTTGACAGTGGCAGTAAAAGGCAAGGAAAGAGGGAGAA
GAAGGCCAAGAAAGACCCAAATAAACCAAAGAGGCCTCCTAGTGCTTTTT
TTTGTCTTCCTTGAGGAGTTCAGGAAAACCTTCAAGAAAGAGAATCCCAA
TGTAACTGCTGTTTCAGCTGTTGGGAAAGCGGCAGGAGGGAAGTGGAAAT
CTATGTCTCCTGCTGAAAAAGCTCCATATGAAAGCAAAGCAGAAAAACTG
AAGTCTGAGTATGGAAAGAAAATGAATGCCTACAATAAAAAGCAGGACGG
TGATGAGGCATCAGACAAGTCAAAGTCAGAAGTGAATGATGAAGATGAAG
CTAGTGGGGAGGAAGAACATCAGCTGGAGCCGGAGCCGGAGCCCGAGCCA
GAGCAAGAGCAGGATGAGGATGAGGATGAGGAAGTGGAAGAAGATGAAGA
TGACGAAGAAGATGATGATGACTGAAATCTGATGATAATGCCTAGGATAC
AAAGGAACAAATTTTGGATTTTGGAATATTAATACCCTTAAAGGGTTTAG
ATTTGGTGGCTTTGGAAAGAAGATGACGTAGACCCCAGCCTTTTTGATGC
CATCATGGTCTTTTTCTTTTTTGTATGAATATATTCAGCGTAAAGTTATC
CCAATTTATGTTTTCAAAAAAAAAAAAAAAAAAAAACCCCACTTTCCTGT
CCAAAGTTGCCATATAAAAAAAACTTTGTCTTACAATTTTTTGCCACAGA
CAGGGTCCCAACCGTTCAAAAAAAAATCTTTATTTTCCCCTCCACCCTAA
ATCCCCCAAAATCAGGTCTAATTACTTGGGCTATACTGTTTTTCCGGGCC
AGCCCGGGGCCCCGGTCCCCCAAATCCCTCCGACGTTACCATTACCAAAC
AAACAACAAACACTTATTATGTGGTATAAAAAAATATTCATCTCCCCAGC
CCACAGGAAAACTCGCCAAGCTTTTATTTCTTACTCAGAGAACTTAACCC
ACTACCTTTTCTTTTTTATAAATAGAAGCCCCTCTCTCTTACTACACATC
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