DY260142

Overview
NameDY260142
Unique NameDY260142
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1067
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260142_ssr243 microsatellite DY260142_ssr243:243..254. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA1_ARATH (Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.386e-53
Identity = 84/107 (78.50%), Postives = 92/107 (85.98%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GGACGYGNLYS+GYGTNTAALSTALFNNG+SCGACFEI+C ND +WC PGSI VTATNFC          GGWCNPPQQHFDLSQPVF++IAQY+AGIVPV+YRR P
Sbjct:   45 GGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIRCQNDGKWCLPGSIVVTATNFCPPNNALPNNAGGWCNPPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVP 151          

HSP 2 Score: 43.1282 bits (100), Expect = 1.386e-53
Identity = 18/22 (81.82%), Postives = 19/22 (86.36%), Query Frame = 3
Query:  105 GQGWTDAPATFYGGGDASGTMG 170
            G GW +A ATFYGGGDASGTMG
Sbjct:   24 GGGWVNAHATFYGGGDASGTMG 45          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP10_ARATH (Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.338e-52
Identity = 80/107 (74.77%), Postives = 91/107 (85.05%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GGACGYGNLYS+GYGT+TAALSTALFNNG+SCG+CFEI+C ND +WC PGSI VTATNFC          GGWCNPP +HFDL+QPVF++IAQY+AGIVPVSYRR P
Sbjct:   44 GGACGYGNLYSQGYGTSTAALSTALFNNGLSCGSCFEIRCENDGKWCLPGSIVVTATNFCPPNNALANNNGGWCNPPLEHFDLAQPVFQRIAQYRAGIVPVSYRRVP 150          

HSP 2 Score: 45.4394 bits (106), Expect = 3.338e-52
Identity = 19/23 (82.61%), Postives = 20/23 (86.96%), Query Frame = 3
Query:  102 YGQGWTDAPATFYGGGDASGTMG 170
            YG GW +A ATFYGGGDASGTMG
Sbjct:   22 YGGGWINAHATFYGGGDASGTMG 44          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP15_ARATH (Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 2.134e-51
Identity = 82/107 (76.64%), Postives = 89/107 (83.18%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GGACGYGNLYS+GYGTNTAALSTALFNNG+SCGACFEIKC +D  WC PG+I VTATNFC          GGWCNPP  HFDLSQPVF++IAQYKAG+VPVSYRR P
Sbjct:   48 GGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCQSDGAWCLPGAIIVTATNFCPPNNALPNNAGGWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVP 154          

HSP 2 Score: 41.2022 bits (95), Expect = 2.134e-51
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 3
Query:  102 YGQGWTDAPATFYGGGDASGTMG 170
            Y  GW +A ATFYGG DASGTMG
Sbjct:   26 YDAGWVNAHATFYGGSDASGTMG 48          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA4_ARATH (Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.482e-49
Identity = 81/109 (74.31%), Postives = 90/109 (82.57%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GGACGYGNLYS+GYGTNTAALSTALFNNGMSCGACFE+KC NDP+WC  G  SI +TATNFC          GGWCNPP++HFDL+ PVF +IAQY+AGIVPVSYRR P
Sbjct:   49 GGACGYGNLYSQGYGTNTAALSTALFNNGMSCGACFELKCANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWCNPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVP 157          

HSP 2 Score: 38.1206 bits (87), Expect = 1.482e-49
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = 3
Query:  105 GQGWTDAPATFYGGGDASGTMG 170
            G  W +A ATFYGG DASGTMG
Sbjct:   28 GGAWQNAHATFYGGSDASGTMG 49          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP14_ARATH (Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.482e-49
Identity = 77/105 (73.33%), Postives = 86/105 (81.90%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACGYGNLYS+GYGTNTAALSTALFN G SCGACF+IKCV+DP+WC  G+I VT TNFC          GGWCNPPQ HFDL+QP+F +IAQYKAG+VPV YRR
Sbjct:   47 GGACGYGNLYSQGYGTNTAALSTALFNGGQSCGACFQIKCVDDPKWCIGGTITVTGTNFCPPNFAQANNAGGWCNPPQHHFDLAQPIFLRIAQYKAGVVPVQYRR 151          

HSP 2 Score: 41.9726 bits (97), Expect = 1.482e-49
Identity = 17/23 (73.91%), Postives = 18/23 (78.26%), Query Frame = 3
Query:  102 YGQGWTDAPATFYGGGDASGTMG 170
            Y  GW +A ATFYGG DASGTMG
Sbjct:   25 YSSGWVNARATFYGGADASGTMG 47          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXP16_ARATH (Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=2 SV=1)

HSP 1 Score: 180.259 bits (456), Expect = 3.281e-49
Identity = 79/107 (73.83%), Postives = 90/107 (84.11%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR 573
            GGACGYGNLYS+GYGTNTAALST+LFN+G SCGACFEIKCVNDP+WC PG  S+FVTATNFC          GGWCNPP+ HFDL+ PVF +IA+Y+AGIVP+SYRR
Sbjct:   52 GGACGYGNLYSQGYGTNTAALSTSLFNSGQSCGACFEIKCVNDPKWCHPGNPSVFVTATNFCPPNLAQPSDNGGWCNPPRSHFDLAMPVFLKIAEYRAGIVPISYRR 158          

HSP 2 Score: 37.3502 bits (85), Expect = 3.281e-49
Identity = 16/22 (72.73%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  105 GQGWTDAPATFYGGGDASGTMG 170
            G  W  A ATFYGG DASGTMG
Sbjct:   31 GGSWQTAHATFYGGNDASGTMG 52          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA6_ARATH (Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 SV=2)

HSP 1 Score: 172.555 bits (436), Expect = 1.340e-47
Identity = 76/109 (69.72%), Postives = 88/109 (80.73%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GGACGYGNLYS+GYG NTAALSTALFNNG SCGACFE+KC +DP+WC  G  SIF+TATNFC          GGWCNPP+ HFDL+ P+F +IA+Y+AGIVPVS+RR P
Sbjct:   49 GGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFELKCASDPKWCHSGSPSIFITATNFCPPNFAQPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVP 157          

HSP 2 Score: 39.6614 bits (91), Expect = 1.340e-47
Identity = 17/22 (77.27%), Postives = 17/22 (77.27%), Query Frame = 3
Query:  105 GQGWTDAPATFYGGGDASGTMG 170
            G GW  A ATFYGG DASGTMG
Sbjct:   28 GGGWETAHATFYGGSDASGTMG 49          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA3_ARATH (Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 2.276e-47
Identity = 79/109 (72.48%), Postives = 87/109 (79.82%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GGACGYGNLYS+GYG NTAALSTALFNNG SCGACFEIKC +DPRWC PG  SI VTATNFC          GGWCNPP++HFDL+ P+F +I  Y+AGIVPVSYRR P
Sbjct:   54 GGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFEIKCTDDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGLYRAGIVPVSYRRVP 162          

HSP 2 Score: 37.3502 bits (85), Expect = 2.276e-47
Identity = 16/22 (72.73%), Postives = 17/22 (77.27%), Query Frame = 3
Query:  105 GQGWTDAPATFYGGGDASGTMG 170
            G  W +A ATFYGG DASGTMG
Sbjct:   33 GGPWQNAHATFYGGSDASGTMG 54          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA9_ARATH (Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 2.967e-47
Identity = 78/109 (71.56%), Postives = 89/109 (81.65%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPG--SIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GGACGYGNLYS+GYG NTAALSTALFNNG+SCG+CFE+KC+NDP WC PG  SI +TATNFC          GGWCNPP++HFDL+ P+F  IA+YKAGIVPVSYRR P
Sbjct:   50 GGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCINDPGWCLPGNPSILITATNFCPPNFNQASDNGGWCNPPREHFDLAMPMFLSIAKYKAGIVPVSYRRIP 158          

HSP 2 Score: 34.2686 bits (77), Expect = 2.967e-47
Identity = 15/22 (68.18%), Postives = 16/22 (72.73%), Query Frame = 3
Query:  105 GQGWTDAPATFYGGGDASGTMG 170
            G  W +A ATFYG  DASGTMG
Sbjct:   29 GGPWINAHATFYGEADASGTMG 50          
BLAST of DY260142 vs. ExPASy Swiss-Prot
Match: EXPA8_ARATH (Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.454e-46
Identity = 76/107 (71.03%), Postives = 87/107 (81.31%), Query Frame = 1
Query:  259 GGACGYGNLYSEGYGTNTAALSTALFNNGMSCGACFEIKCVNDPRWCRPGSIFVTATNFCXXXXXXXXXXGGWCNPPQQHFDLSQPVFEQIAQYKAGIVPVSYRR*P 579
            GGACGYGNLY +GYGTNTAALSTALFNNG++CGAC+E+KC +DPRWC   +I VTATNFC          GGWCNPP QHFDL++P F QIAQY+AGIVPVS+RR P
Sbjct:   48 GGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCNDDPRWCLGSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGIVPVSFRRVP 154          

HSP 2 Score: 35.8094 bits (81), Expect = 1.454e-46
Identity = 15/20 (75.00%), Postives = 15/20 (75.00%), Query Frame = 3
Query:  111 GWTDAPATFYGGGDASGTMG 170
            GW    ATFYGG DASGTMG
Sbjct:   29 GWQGGHATFYGGEDASGTMG 48          
The following BLAST results are available for this feature:
BLAST of DY260142 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
EXPA1_ARATH1.386e-5378.50Expansin-A1 OS=Arabidopsis thaliana GN=EXPA1 PE=2 ... [more]
EXP10_ARATH3.338e-5274.77Expansin-A10 OS=Arabidopsis thaliana GN=EXPA10 PE=... [more]
EXP15_ARATH2.134e-5176.64Expansin-A15 OS=Arabidopsis thaliana GN=EXPA15 PE=... [more]
EXPA4_ARATH1.482e-4974.31Expansin-A4 OS=Arabidopsis thaliana GN=EXPA4 PE=1 ... [more]
EXP14_ARATH1.482e-4973.33Expansin-A14 OS=Arabidopsis thaliana GN=EXPA14 PE=... [more]
EXP16_ARATH3.281e-4973.83Expansin-A16 OS=Arabidopsis thaliana GN=EXPA16 PE=... [more]
EXPA6_ARATH1.340e-4769.72Expansin-A6 OS=Arabidopsis thaliana GN=EXPA6 PE=2 ... [more]
EXPA3_ARATH2.276e-4772.48Expansin-A3 OS=Arabidopsis thaliana GN=EXPA3 PE=2 ... [more]
EXPA9_ARATH2.967e-4771.56Expansin-A9 OS=Arabidopsis thaliana GN=EXPA9 PE=2 ... [more]
EXPA8_ARATH1.454e-4671.03Expansin-A8 OS=Arabidopsis thaliana GN=EXPA8 PE=2 ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YH04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260142 ID=DY260142; Name=DY260142; organism=Citrus clementina; type=EST; length=1067bp
CTCTTTCTCTCTTAAAAAAGATACCCAAGCAAAAGGGTTTCAGGAACATG
GCATTTCTTGGGCTGCTGTTGTTGGGGATTCTTTCTTTAGTCTCATCTGT
TTATGGCCAGGGATGGACTGATGCTCCTGCCACTTTTTATGGTGGGGGTG
ATGCCTCTGGTACAATGGGTACGTCGTATGCCTGTCATAAACCTTTTTCG
TTTCATGTTATTTTGATCAACATTAAAACCAAATTGCTGATGATTAATTA
ATTATTCAGGTGGCGCTTGTGGGTATGGAAACTTATACAGCGAGGGATAT
GGGACAAACACAGCAGCTCTGAGCACTGCGCTTTTCAACAATGGCATGAG
CTGTGGGGCTTGTTTTGAGATCAAGTGTGTTAATGACCCAAGATGGTGCC
GTCCGGGCTCCATTTTTGTTACTGCCACAAATTTTTGCCCTCCAAATAAT
GCTCTCCCCAACAATGCCGGTGGCTGGTGCAATCCTCCCCAGCAACATTT
TGACCTCTCTCAGCCTGTGTTTGAACAAATTGCTCAGTACAAAGCTGGGA
TAGTACCTGTGTCTTACAGAAGGTGACCCGTTTGAATCCTACAAATATTC
ATATTGTTTTTTATTCGGGCACTATTTGGTCCTGTGTTTAACTAGCAAGC
AGTTAAAATGATTATTCCAATCTTCTGACCTTGTTTTGGGGATTAATTCA
ATTTTACTCCCGATGGAAAATCAATACATTTATTACTTTACCCTGAACCC
TTGTTCCGTAAGTTCCAGAGCCCAAAAACAAAAAAGTGTTGGGTAAACAA
AAAAAAAAAAAAAAAAACCCCAATTTTCTTGTAACAAGTTGGGCTTAAAA
AAAAAGCCTTGCTTAACCATTTGTTCGCACCAAACAGGCCCCTACCCTTC
AAAAAAAATCATTATTTCCCCCCCCCCGAAAACCCCCCTAAATGGGTCCC
AAATTCAAGGGCGCACAACTGTTTTCCCGGCCCTCCCCGGCCCCTGGTCC
CAAAATCCCCTTAGGTTCCTTTTTCCCCAAAAAAAAAAATTACTCCCCCG
GTTTACAAAAACCCCCC
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