DY260144

Overview
NameDY260144
Unique NameDY260144
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length910
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14652 contig Ccv1_Contig14652:1..910. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY260144 vs. ExPASy Swiss-Prot
Match: APT1_ARATH (Adenine phosphoribosyltransferase 1 OS=Arabidopsis thaliana GN=APT1 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.595e-43
Identity = 90/116 (77.59%), Postives = 102/116 (87.93%), Query Frame = 1 
Query:   31 SGDSTQPQQMASADVKAQDPRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISRRVFL 378
            S  +++  +MA+ DV  QDPRIA I+S+IRVIPDFPKPGIMFQDITTLLLDT+AF+DTI LFV+RYKDK ISVVAG+EARGFIFGPPIALAIGAKFVPMRKPKKLPG+VIS    L
Sbjct:   52 SAAASRDSEMATEDV--QDPRIAKIASSIRVIPDFPKPGIMFQDITTLLLDTEAFKDTIALFVDRYKDKGISVVAGVEARGFIFGPPIALAIGAKFVPMRKPKKLPGKVISEEYSL 165

HSP 2 Score: 132.88 bits (333), Expect = 2.519e-30
Identity = 64/84 (76.19%), Postives = 74/84 (88.10%), Query Frame = 2 
Query:  350 GRLFPEEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPLGEKPLFVPV 601
            G++  EEYSLEYG D +EMHVGAV+ GERA+I+DDL+ATGGTL+AAIRLLERVGV +VECACVIELPELKG+E LGE  LFV V
Sbjct:  156 GKVISEEYSLEYGTDTIEMHVGAVEPGERAIIIDDLIATGGTLAAAIRLLERVGVKIVECACVIELPELKGKEKLGETSLFVLV 239
[Close]
BLAST of DY260144 vs. ExPASy Swiss-Prot
Match: APT_LEPBL (Adenine phosphoribosyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=apt PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.017e-43
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + S IR IPD+PKPGI+F+DIT+LLLD +    TI  FV RY+DK I+ VAGIEARGF+ G P+A  +G  F+P+RK  KLP E +S
Sbjct:    4 VKSKIRTIPDYPKPGILFRDITSLLLDPEGLALTIGTFVNRYQDKGITKVAGIEARGFLTGAPLAFQLGVGFIPIRKKGKLPAETVS 90

HSP 2 Score: 89.7373 bits (221), Expect = 7.017e-43
Identity = 43/79 (54.43%), Postives = 61/79 (77.22%), Query Frame = 2 
Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPLGEKPLFVPV 601
            EEY LEYGKDV+E+H  AVQ G++ L++DDL+ATGGT+ AA++LL+++G  + E   +I+LP+L G + L EK L VPV
Sbjct:   91 EEYDLEYGKDVIEIHKDAVQPGDKILLMDDLIATGGTMIAAVKLLKKLGAQIYEAGVIIDLPDLGGSKKLQEK-LEVPV 168
[Close]
BLAST of DY260144 vs. ExPASy Swiss-Prot
Match: APT_LEPBJ (Adenine phosphoribosyltransferase OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=apt PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.017e-43
Identity = 50/87 (57.47%), Postives = 64/87 (73.56%), Query Frame = 1 
Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + S IR IPD+PKPGI+F+DIT+LLLD +    TI  FV RY+DK I+ VAGIEARGF+ G P+A  +G  F+P+RK  KLP E +S
Sbjct:    4 VKSKIRTIPDYPKPGILFRDITSLLLDPEGLALTIGTFVNRYQDKGITKVAGIEARGFLTGAPLAFQLGVGFIPIRKKGKLPAETVS 90

HSP 2 Score: 89.7373 bits (221), Expect = 7.017e-43
Identity = 43/79 (54.43%), Postives = 61/79 (77.22%), Query Frame = 2 
Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPLGEKPLFVPV 601
            EEY LEYGKDV+E+H  AVQ G++ L++DDL+ATGGT+ AA++LL+++G  + E   +I+LP+L G + L EK L VPV
Sbjct:   91 EEYDLEYGKDVIEIHKDAVQPGDKILLMDDLIATGGTMIAAVKLLKKLGAQIYEAGVIIDLPDLGGSKKLQEK-LEVPV 168
[Close]
BLAST of DY260144 vs. ExPASy Swiss-Prot
Match: APT_LEPIN (Adenine phosphoribosyltransferase OS=Leptospira interrogans GN=apt PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.602e-42
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + S IR IPD+PKPGI+F+DIT+LLLD +    TI  FV RY+ K I+ VAGIEARGF+ G P+A  +G  F+P+RK  KLP E +S
Sbjct:    4 VKSKIRTIPDYPKPGILFRDITSLLLDPEGLALTIGTFVNRYQGKGITKVAGIEARGFLTGAPLAFQLGVGFIPIRKKGKLPSETVS 90

HSP 2 Score: 88.9669 bits (219), Expect = 7.602e-42
Identity = 41/79 (51.90%), Postives = 62/79 (78.48%), Query Frame = 2 
Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPLGEKPLFVPV 601
            EEY LEYGKDV+E+H  ++Q G++ L++DDL+ATGGT+ AA++LL+++G  + E   +I+LP+L GR+ L E+ L VPV
Sbjct:   91 EEYDLEYGKDVIEVHKDSIQPGDKILLMDDLIATGGTMIAAVKLLKKLGAEIYEAGVIIDLPDLGGRKKLQEE-LKVPV 168
[Close]
BLAST of DY260144 vs. ExPASy Swiss-Prot
Match: APT_LEPIC (Adenine phosphoribosyltransferase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=apt PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.602e-42
Identity = 49/87 (56.32%), Postives = 63/87 (72.41%), Query Frame = 1 
Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            + S IR IPD+PKPGI+F+DIT+LLLD +    TI  FV RY+ K I+ VAGIEARGF+ G P+A  +G  F+P+RK  KLP E +S
Sbjct:    4 VKSKIRTIPDYPKPGILFRDITSLLLDPEGLALTIGTFVNRYQGKGITKVAGIEARGFLTGAPLAFQLGVGFIPIRKKGKLPSETVS 90

HSP 2 Score: 88.9669 bits (219), Expect = 7.602e-42
Identity = 41/79 (51.90%), Postives = 62/79 (78.48%), Query Frame = 2 
Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPLGEKPLFVPV 601
            EEY LEYGKDV+E+H  ++Q G++ L++DDL+ATGGT+ AA++LL+++G  + E   +I+LP+L GR+ L E+ L VPV
Sbjct:   91 EEYDLEYGKDVIEVHKDSIQPGDKILLMDDLIATGGTMIAAVKLLKKLGAEIYEAGVIIDLPDLGGRKKLQEE-LKVPV 168
[Close]
BLAST of DY260144 vs. ExPASy Swiss-Prot
Match: APT_SHELP (Adenine phosphoribosyltransferase OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=apt PE=3 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 1.290e-41
Identity = 53/91 (58.24%), Postives = 70/91 (76.92%), Query Frame = 1 
Query:   91 RIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVIS 363
            ++A I  +I+ IPD+PKPGIMF+D+T+L+ D  A++ TI LFVERYKD  ++ V G EARGF+FG P+AL +G  FVP+RKP KLP E IS
Sbjct:    5 KLALIKQSIKTIPDYPKPGIMFRDVTSLMEDPAAYQATIALFVERYKDLGVTKVVGTEARGFLFGAPLALELGVGFVPVRKPGKLPRETIS 95

HSP 2 Score: 78.5666 bits (192), Expect = 1.290e-41
Identity = 36/75 (48.00%), Postives = 51/75 (68.00%), Query Frame = 2 
Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPLGEKPL 589
            E Y LEYG D++E+H  A++ G++ L+VDDL+ATGGT+ A ++L+ ++G  V   A VI LPEL G   L E  L
Sbjct:   96 ESYELEYGHDMLEIHTDAIKPGDKVLVVDDLLATGGTIEATVKLIRQLGGEVEHAAFVISLPELGGEHRLAEMGL 170
[Close]
BLAST of DY260144 vs. ExPASy Swiss-Prot
Match: APT_PSYIN (Adenine phosphoribosyltransferase OS=Psychromonas ingrahamii (strain 37) GN=apt PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.396e-40
Identity = 55/87 (63.22%), Postives = 67/87 (77.01%), Query Frame = 1 
Query:   88 PRIAGISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLP 348
            P +  I + I+ IPD+P PGIMF+DIT+L+ +  AF  TI+L VERYKD+NIS V G EARGFIFG P+A AIGA FVP+RKP KLP
Sbjct:    4 PTLEEIKNCIKSIPDYPIPGIMFRDITSLIENGAAFSATINLLVERYKDQNISKVVGTEARGFIFGAPLAAAIGAGFVPVRKPGKLP 90

HSP 2 Score: 77.411 bits (189), Expect = 1.396e-40
Identity = 38/70 (54.29%), Postives = 49/70 (70.00%), Query Frame = 2 
Query:  365 EEYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            E Y LEYG D + +H  A++  ER L+VDDL+ATGGT  A+I+L+ R G  V+E A VIELP LKG + L
Sbjct:   96 ENYELEYGTDSLHIHSDAIKKNERVLLVDDLLATGGTAEASIKLIHRSGGIVIESAFVIELPALKGAQKL 165
[Close]
BLAST of DY260144 vs. ExPASy Swiss-Prot
Match: APT_CLOPS (Adenine phosphoribosyltransferase OS=Clostridium perfringens (strain SM101 / Type A) GN=apt PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.842e-40
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVI 360
            +   IRVI DFPK GI F+DITTL+ D +  RD++D   E +KDKNI VV G EARGFIFG P+A A+G  F+P+RKP KLPG+ +
Sbjct:    3 LKDKIRVIEDFPKKGISFKDITTLIADGEGLRDSVDQMAEFFKDKNIDVVVGPEARGFIFGVPVAYALGVGFIPVRKPGKLPGDTV 88

HSP 2 Score: 78.1814 bits (191), Expect = 6.842e-40
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 2 
Query:  368 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            EY LEYGKD +E+H  A++ G R  IVDDL+ATGGT++A  +L+E+ G  V   A  IEL ELKGR+ L
Sbjct:   91 EYDLEYGKDALEIHKDAIKPGMRVAIVDDLLATGGTIAAVAKLVEQAGGEVAGLAFTIELTELKGRDKL 159
[Close]
BLAST of DY260144 vs. ExPASy Swiss-Prot
Match: APT_CLOPE (Adenine phosphoribosyltransferase OS=Clostridium perfringens GN=apt PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.842e-40
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVI 360
            +   IRVI DFPK GI F+DITTL+ D +  RD++D   E +KDKNI VV G EARGFIFG P+A A+G  F+P+RKP KLPG+ +
Sbjct:    3 LKDKIRVIEDFPKKGISFKDITTLIADGEGLRDSVDQMAEFFKDKNIDVVVGPEARGFIFGVPVAYALGVGFIPVRKPGKLPGDTV 88

HSP 2 Score: 78.1814 bits (191), Expect = 6.842e-40
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 2 
Query:  368 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            EY LEYGKD +E+H  A++ G R  IVDDL+ATGGT++A  +L+E+ G  V   A  IEL ELKGR+ L
Sbjct:   91 EYDLEYGKDALEIHKDAIKPGMRVAIVDDLLATGGTIAAVAKLVEQAGGEVAGLAFTIELTELKGRDKL 159
[Close]
BLAST of DY260144 vs. ExPASy Swiss-Prot
Match: APT_CLOP1 (Adenine phosphoribosyltransferase OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=apt PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.842e-40
Identity = 50/86 (58.14%), Postives = 63/86 (73.26%), Query Frame = 1 
Query:  103 ISSAIRVIPDFPKPGIMFQDITTLLLDTKAFRDTIDLFVERYKDKNISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVI 360
            +   IRVI DFPK GI F+DITTL+ D +  RD++D   E +KDKNI VV G EARGFIFG P+A A+G  F+P+RKP KLPG+ +
Sbjct:    3 LKDKIRVIEDFPKKGISFKDITTLIADGEGLRDSVDQMAEFFKDKNIDVVVGPEARGFIFGVPVAYALGVGFIPVRKPGKLPGDTV 88

HSP 2 Score: 78.1814 bits (191), Expect = 6.842e-40
Identity = 38/69 (55.07%), Postives = 49/69 (71.01%), Query Frame = 2 
Query:  368 EYSLEYGKDVMEMHVGAVQAGERALIVDDLVATGGTLSAAIRLLERVGVHVVECACVIELPELKGREPL 574
            EY LEYGKD +E+H  A++ G R  IVDDL+ATGGT++A  +L+E+ G  V   A  IEL ELKGR+ L
Sbjct:   91 EYDLEYGKDALEIHKDAIKPGMRVAIVDDLLATGGTIAAVAKLVEQAGGEVAGLAFTIELTELKGRDKL 159
The following BLAST results are available for this feature:
BLAST of DY260144 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
APT1_ARATH2.595e-4377.59Adenine phosphoribosyltransferase 1 OS=Arabidopsis... [more]
APT_LEPBL7.017e-4357.47Adenine phosphoribosyltransferase OS=Leptospira bo... [more]
APT_LEPBJ7.017e-4357.47Adenine phosphoribosyltransferase OS=Leptospira bo... [more]
APT_LEPIN7.602e-4256.32Adenine phosphoribosyltransferase OS=Leptospira in... [more]
APT_LEPIC7.602e-4256.32Adenine phosphoribosyltransferase OS=Leptospira in... [more]
APT_SHELP1.290e-4158.24Adenine phosphoribosyltransferase OS=Shewanella lo... [more]
APT_PSYIN1.396e-4063.22Adenine phosphoribosyltransferase OS=Psychromonas ... [more]
APT_CLOPS6.842e-4058.14Adenine phosphoribosyltransferase OS=Clostridium p... [more]
APT_CLOPE6.842e-4058.14Adenine phosphoribosyltransferase OS=Clostridium p... [more]
APT_CLOP16.842e-4058.14Adenine phosphoribosyltransferase OS=Clostridium p... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YH06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260144 ID=DY260144; Name=DY260144; organism=Citrus clementina; type=EST; length=910bp
CACTGACTATAACTTGCGTTTTGAGTAGTGAGTGGTGACTCGACGCAACC
TCAACAAATGGCTTCAGCTGACGTAAAAGCACAAGACCCTCGAATCGCTG
GGATTTCCTCAGCAATTCGTGTCATCCCAGACTTCCCTAAACCAGGGATT
ATGTTTCAAGATATCACAACATTGCTTCTTGATACCAAGGCTTTTAGAGA
TACTATTGATCTGTTCGTTGAGAGGTACAAGGACAAAAACATCTCTGTTG
TTGCAGGTATTGAAGCTAGGGGTTTTATATTTGGGCCTCCTATTGCATTG
GCTATTGGGGCAAAGTTTGTTCCTATGAGGAAACCTAAGAAGCTTCCTGG
GGAGGTTATTTCCCGAAGAGTATTCCTTGGAATATGGAAAAGATGTAATG
GAGATGCATGTAGGTGCTGTACAAGCAGGGGAGCGTGCTTTAATAGTAGA
CGATCTAGTTGCAACTGGTGGGACCTTGTCTGCTGCAATCAGGCTACTTG
AGCGAGTTGGGGTGCATGTGGTTGAGTGTGCATGCGTGATTGAACTGCCA
GAGCTAAAGGGTCGGGAACCGCTGGGAGAGAAACCACTATTTGTTCCTGT
AAGCTAAACTTGACCTCAGGTTATGGTTTAAATGCAATGTTTGTGGACCA
TATGGGTTTCCAGTCCCTCGGGCTCTGCCCCAAGCTTGAGAACCTCCTAA
AACCCCCCGGGAATAAAAGAGCCGTTTCATTGGCTTTTTTATTTTCATTT
AAGACCTTGGGGAAAGAGTGGTGGGGGAGCCGGGTTCCGTCCGCTTTTGG
TGGGGTTAAAAATGACAGGCTCATCAAAAAAATTCCCCCTTCCCCGGAAA
ACGCTGTATTTGAGGCCTTCCAAATTTCCTGGGAAATCCCTCTTGAACGG
TCTGTGAAGA
back to top