DY260150

Overview
NameDY260150
Unique NameDY260150
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1034
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14656 contig Ccv1_Contig14656:1..1034. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260150 vs. ExPASy Swiss-Prot
Match: PUB35_ARATH (U-box domain-containing protein 35 OS=Arabidopsis thaliana GN=PUB35 PE=1 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 5.527e-16
Identity = 42/84 (50.00%), Postives = 58/84 (69.05%), Query Frame = 1
Query:  544 PVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCHIHKLVIGAQSQGIFPWK 795
            P+GN IPI +VRDDV  AY+QE  W+++ +L P+  +  +R+V VEV VIESD+VA AIA+EV    I ++VIG  S+  F  K
Sbjct:   66 PMGNAIPISEVRDDVVTAYRQEILWQSEEMLKPYTKLFVRRKVAVEVLVIESDNVAAAIAEEVTRDSIDRIVIGGSSRSFFSRK 149          
BLAST of DY260150 vs. ExPASy Swiss-Prot
Match: PUB52_ARATH (U-box domain-containing protein 52 OS=Arabidopsis thaliana GN=PUB52 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.379e-13
Identity = 38/104 (36.54%), Postives = 63/104 (60.58%), Query Frame = 1
Query:  544 PVGNFIPIEQVRDDVAAAYKQEEKWKTDRLLLPFRNMCAQRRVEVEVKVIESDDVAKAIADEVASCHIHKLVIGAQSQGIFPWKFNKNKYVPPETQYACQSFCT 855
            P+G  + + ++R+DV +AYKQE  W  + +L P++ M  +R+V+VEV +++S + A AIA+E+A   + KLVIG   +G F  K + +  +      A   FCT
Sbjct:   68 PMGIAVAVSELREDVVSAYKQELDWSANEMLRPYKKMFERRKVQVEVLLLDSLEPAAAIAEEIAGTGVTKLVIGMSLRGFFSRKIDMSSLIAT----AVPRFCT 167          
The following BLAST results are available for this feature:
BLAST of DY260150 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PUB35_ARATH5.527e-1650.00U-box domain-containing protein 35 OS=Arabidopsis ... [more]
PUB52_ARATH4.379e-1336.54U-box domain-containing protein 52 OS=Arabidopsis ... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YH15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260150 ID=DY260150; Name=DY260150; organism=Citrus clementina; type=EST; length=1034bp
AAGGGCAACCCATAGAGTAGGTATGCTGTGTTATGGGCATTGGAAAAGTT
CATTCCTGAAGGAATCAATCTGTTTAAGTTATTACATGTCCGCCCAAGAA
TTACTTCAGTTCCTACAGCAAGTAAGCAAATCCCTTTGGTAATTAAGTCA
AGTTTTAACTTCAATCAATTTTTCCAGCTCGTTTCATGTATGCATATAAA
CACTAGAAGCTGAAATTTTTTAAACTGTTTTCGTAGAAGAATTGCAGGTA
GTAGGCTCAGTCTCGCCCTATTTTCCAATCTAGCTGTCAAGTTCTATGTT
ACTAATGCGTATAGCATATTAGAATGTTATTGACAGTTGTGGTATTGTAT
AGCGTCTCAATAGTGATTTTGATACAAAAAAGTTACGGTTTGGTGTTTGA
AAAGTGTTCATGTGAAGATTCACAACGAGAACTTGATATGGCAAAAGTAG
CATATCAAGAAGAACTTATGTAAGTCCTTAAAGTTAGAAATAAACTGAAT
GGTTATGATAACTGACTTATCAGCATCTCTGGCCATTGGACATCCAGTGG
GAAATTTTATCCCTATTGAACAAGTACGTGATGATGTAGCAGCTGCTTAT
AAGCAGGAGGAGAAATGGAAGACAGACAGGCTTCTGCTTCCTTTCAGAAA
TATGTGTGCTCAGAGGAGGGTGGAGGTAGAAGTGAAAGTGATTGAATCAG
ATGATGTAGCAAAAGCAATAGCAGACGAAGTTGCTAGCTGCCATATCCAC
AAGCTTGTTATTGGTGCCCAATCTCAGGGCATATTTCCATGGAAATTTAA
TAAAAATAAATATGTCCCTCCAGAAACCCAATATGCGTGCCAAAGCTTTT
GTACGGCCCAATGGGGTTGAAAAAAAGAAATTTGGCCTCCTGTCCCCCCC
ATCCGAATTTTGGGCCCCATTGGGGAACCCCAAAAAATAAAAGACAGTGG
AAACAGCGTTCCCCCTAAAAACCATTTCCCCCAGTTCATAAATTCTAACC
TCCAAAAAAAAAAATCCTGGGGTCACCCTGTTGC
back to top