DY260152

Overview
NameDY260152
Unique NameDY260152
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1111
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY260152 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 2.258e-35
Identity = 46/58 (79.31%), Postives = 53/58 (91.38%), Query Frame = 3 
Query:  225 PTTPLSARKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 398
            PTTP+SARKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:   54 PTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110

HSP 2 Score: 66.2402 bits (160), Expect = 2.258e-35
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 2 
Query:   35 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMPASPGAPSTPVTPDDA 235
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+          ++MP +P  P TP TP  A
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKV-PQPLNLKDEGESS--------KITMPTTPTTPVTPTTPISA 60
The following BLAST results are available for this feature:
BLAST of DY260152 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN2.258e-3579.31Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YH17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260152 ID=DY260152; Name=DY260152; organism=Citrus clementina; type=EST; length=1111bp
TTTAGAAACTACTTTCTAAATTGTAAATTTAAAGATGCTAGAGAAGCTTT
GGGACGATGTTGTGGCAGGGCCTCAGCCTGATCGTGGCCTTGGCAGGCTG
AGGAAAATCACCACAACACCCTTAGCAGTCAAAGAGGGTGGTGAGGCGGA
GTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTCAATGCCAGCGAGTCCAG
GGGCACCGTCGACGCCAGTGACGCCCGACGACGCCGCTGTCGGCGCGTAA
GGACAACGTGTGGAGGAGCGTGTTTCACCCCGGTAGCAACCTTGCTACTA
GGGGTATCGGTGCAGAGGTCTTTGACAAGCCCACACATCCTAACTCTCCC
ACTGTTTATGACTGGCTTTACAGTGGGGAGACTAGGAGCAAGCATCATCA
CTGAGTGGATGATACGCTCCAGCGATGTAAATGAATGTGATGGGTCACCA
ACTCCCCGGATGAGTCGCCTGTAGTCTGTAGATAGTGTCGTTTCGTTTTG
GATTTCCCCACCTGTCCTTGTCCGTTTTGTTAATGCTATTTGCATTACCT
GTCCTTCCCATCCAAAGTTTGGTTCTACAATGCTGCCGACTATAAATTAA
ACTAAGGACCTGTGCAGGCTTTCCACCCCACAACTTAACACATGCGTGCG
AGGCGAAAGTCGACCAACCACGGCACAGCCTCACCCCTTCGGGGCTTTTG
TCTTTCCGCCACGTGTCCCACCGCCCCCTCTCGCCCCGGCCACCGCACCT
CACCCCAGAAAATCCCACCATTACTACCTCCGCCCCCTCACCCCCCACTC
TTCTGCCCCCCCCACCTCGCTACCAGACAGATCACCAGTCCCTATGCTGG
GCAGCACCAACTCGACAGAAATACTTCCTGTCACCCATATCTCTTCCGAC
CTGCGGCGCCCCCCCGGTCATCATCAAACAACCCACACATCGTCCCTCCC
CTGCCCCTCACGCCCCCACTAACCTCTGCCCCACCACCTGCTTCCCCGCC
CCCCACTCTCCTGCCCCCTCCATGCCTCTAGTCGGTGATATGTACTTTAT
CTACCTATCCCCACATCCAACCTCTTCCCATGCCCCTATCACTCTCCCCC
TCCCCACACCT
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