DY260159

Overview
NameDY260159
Unique NameDY260159
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1004
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY260159 vs. ExPASy Swiss-Prot
Match: DRPE_CRAPL (Desiccation-related protein PCC13-62 OS=Craterostigma plantagineum PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 4.534e-47
Identity = 88/173 (50.87%), Postives = 110/173 (63.58%), Query Frame = 2 
Query:  119 AAAPASRGPIEANDKDLIQVALNXXXXXXXXXXNGALGRGLDSIEPEMAAGGPPPTGASKANLDHTTYRIIEEFGYQEIGHLRAIVTTVGGFARPQIDLSRQNFANIFDQAVGYKLTPPFDPYSNTVNYLLASYVIPYVGLVGYVGTIPNLVNCTSRSLVAGLLGVESGQDAV 637
            AA    +  I  +D  L++  LN            A G+G+D +EPE+A GGP P G  KANL      II +F YQE GH+RAI ++V GF RP +DLS ++FA + D A G  L PPFDPY+N +NYLLA YV+PYVGL GYVG  P L +  SR LVAGLL VE+GQDA+
Sbjct:   26 AAWHHEKDDIPKSDVSLLEFPLNLELLEAEFFAWAAFGKGIDELEPELAKGGPSPIGVQKANLSPFIRDIIAQFAYQEFGHVRAIQSSVEGFPRPLLDLSAKSFATVMDSAFGKTLKPPFDPYANDINYLLACYVVPYVGLTGYVGANPKLESPVSRKLVAGLLAVEAGQDAI 198

HSP 2 Score: 35.039 bits (79), Expect = 4.534e-47
Identity = 18/30 (60.00%), Postives = 20/30 (66.67%), Query Frame = 3 
Query:  639 IRTLLYERADQIVVPYKMTVAEFPERILAL 728
            IR LLYERA   V PY +TVAEF  +I  L
Sbjct:  199 IRALLYERATDKVEPYGITVAEFTNKISEL 228
The following BLAST results are available for this feature:
BLAST of DY260159 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DRPE_CRAPL4.534e-4750.87Desiccation-related protein PCC13-62 OS=Craterosti... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YI02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260159 ID=DY260159; Name=DY260159; organism=Citrus clementina; type=EST; length=1004bp
TTAGCTGGTTTTTTTTATGAATTGCCCATAAAAAAAAAAAATGGCAACTC
CATACTATTCTTTCGTTGTAGCTTTGCATCTTACATTAATGAATATTCTT
TTTGGCATGGTCGTCGGTGCTGCAGCTCCAGCTTCCCGCGGACCAATCGA
AGCCAACGATAAGGATCTTATTCAAGTAGCTCTGAATTTGGAGTTCTTAG
AAACTGAATTCTTCTTAAATGGTGCACTCGGCAGAGGACTTGACAGTATA
GAGCCAGAGATGGCAGCGGGTGGTCCTCCTCCGACTGGCGCCAGCAAGGC
CAACCTTGACCATACTACATATCGGATCATTGAGGAATTCGGTTATCAGG
AGATTGGTCATCTCAGGGCTATCGTAACAACAGTTGGTGGATTTGCAAGG
CCTCAGATAGATCTCAGCCGTCAAAATTTCGCCAATATATTTGACCAAGC
AGTTGGTTACAAACTCACTCCTCCATTCGACCCTTATTCCAACACTGTCA
ATTATCTCTTAGCAAGCTATGTCATCCCTTATGTGGGACTCGTCGGTTAT
GTTGGCACCATTCCCAACCTTGTCAACTGCACTTCTCGTAGTTTAGTTGC
AGGGCTCTTAGGAGTGGAGTCTGGACAAGATGCAGTAAATACGGACGTTA
CTATACGAAAGGGCTGACCAGATTGTGGTTCCTTATAAGATGACAGTAGC
TGAATTCCCTGAACGTATCCTCGCCCTTTAGGAAACGGCTTGGCAACCGC
GGAAACAAAAATGAAGGGCCTAAGGGTGGCCCCGAAAACTTGGCGCTAAA
AACAGGAACAAAAGTAACTTTCCATCAGCCAATGCCAATTTCCCTATCCC
AACTCCCAAACTCCCCCGGAAATTTTAAAGGATTGTGTACCGGAACCGGG
CCATGAAAAACAACCCCCGGAAGGATTTTTTTCCCCAAGGGTGGCCCACC
GGGGCCCATTTCCCAAAAAGTTTTCCCGGCCCCCCCTTTAAACCCTTGCC
CCAT
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