DY260163

Overview
NameDY260163
Unique NameDY260163
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1099
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14644 contig Ccv1_Contig14644:384..1482. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY260163 vs. ExPASy Swiss-Prot
Match: CH62_CUCMA (Chaperonin CPN60-2, mitochondrial OS=Cucurbita maxima GN=CPN60-2 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 7.672e-11
Identity = 43/89 (48.31%), Postives = 57/89 (64.04%), Query Frame = 2 
Query:   20 MSLLYACKELDKLQTANHGQKIGVPAIQYALEMLVSAIAYSAGVDGS-VVSKLLQGSKPK---PLRKGENADMLMPEIVFPIENHKSSL 274
            ++LLYA KELDKL TAN  QKIGV  IQ AL+  V  IA +AGV+G+ VV KLL+   P       KGE  DM+   I+ P++  +++L
Sbjct:  448 VALLYASKELDKLSTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDNPDLGYDAAKGEYVDMIKAGIIDPLKVIRTAL 536
The following BLAST results are available for this feature:
BLAST of DY260163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CH62_CUCMA7.672e-1148.31Chaperonin CPN60-2, mitochondrial OS=Cucurbita max... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YI08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260163 ID=DY260163; Name=DY260163; organism=Citrus clementina; type=EST; length=1099bp
GGAAGGAGTTGTTTTTGTGATGTCACTTTTATATGCCTGCAAGGAGTTGG
ATAAATTGCAAACTGCTAACCATGGTCAGAAGATTGGTGTTCCAGCTATC
CAATATGCTCTTGAGATGCTGGTGAGCGCGATTGCTTATAGCGCTGGAGT
TGATGGGTCAGTTGTTAGCAAGCTACTCCAGGGATCCAAGCCTAAACCCC
TCCGTAAAGGTGAAAATGCAGATATGCTTATGCCAGAAATTGTTTTTCCC
ATTGAAAACCATAAGAGCAGTCTTGGTGGAGGCTACAAGTGAGATGTTAG
CAAGACTTTGAAATTGAGGCTCTTAAGGTGGCTCAGCTTGTCTTTCCAAG
AATATTTGCAAAGAAAGTTCCAGCTGATACAAGCCTCCAGAGTAAAACAA
AGGCGTAATGGAGGCCTCCATCAGCTTTCACTGGGTGCCGTTATGGTTAC
GGTGATTTATAATCCCCATTCTCCTGGCACCTTATATTTATTCATTATTT
GTTTGAAAAGCATACATTCAGCTCTTTTCTCAACTATACACCAACCAAAT
ACCCAATATCTTGCTCATCAGGAGTTCCGCCCCAAATCAAAAACACCTAG
CACCGCCCCAAAAAACCAAAAACCACAAACAAAACAACCCCACTTCCCGC
ACCCAATCGGCCCTCCCAGAAAAGCCTCCCTTAACACTTTGTCCCTCATC
ACCGCGCCCCCCTCCCTCCCAAAAAAATTCTCTCCTTGCCACCACCCTCC
ATACCCCCTATACGCACCTTACATACCTACGGTCAACCTTCTTTCTCCGC
CACTCTCTGGCCCTTTGTCCTCACCTTCTCACGACGCTTCCACTCCCCCA
CTAACATAACTACTCCTTCCCCCTTCTCCAATCCCCTCCCCCCTGCACCC
CCCTCACCTCCTCCCTCTCCCCTCCACACCGGACTTCTCCCCCACCCCAT
TTCTCCCAAACCCCCCCTCCTCTCTCTATCTACGGACTCCACCTCCCCCC
CCACCCCCCTTTCCTCTCTTCACTCCCCAACCCCCTTCCACCCCCCACCT
CTCTCCCTCCCCCTCCACCCCACCCCATCTCACCTACCTCACTCCTTCA
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