DY260164

Overview
NameDY260164
Unique NameDY260164
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1123
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1438 contig Ccv1_Contig1438:1..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260164 vs. ExPASy Swiss-Prot
Match: PUB22_ARATH (U-box domain-containing protein 22 OS=Arabidopsis thaliana GN=PUB22 PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.836e-60
Identity = 134/245 (54.69%), Postives = 163/245 (66.53%), Query Frame = 3
Query:  135 EEIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAKSPQMQIKCLKKLRSIAAENETNKRCLESARAVEFLASFVTNSNAMEESPEG---------------FDNLHESSRP-VHEALSLPCNP*ISELG*K-ILVGAEWEPLGIPLPKSWPRETSNSPAKAALFLKSRPEITQP 818
            +EI++P+FFLCPISL IMKDPV V TGITYDRESIEKWLF+GK N+CP+TKQV++ E +LTPNHTLRRLIQSWCTLNASYGIERIPTPKPPI K++I KL+ E++ S   Q+KCLK+LR I +EN TNKRCLE+A   EFLA+ V+NS     SP                  +N  +SSR  + EALS+  +   SE   K +L   +   L   L K   R    S A AAL LK   E+  P
Sbjct:    3 QEIEIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVIT-ETDLTPNHTLRRLIQSWCTLNASYGIERIPTPKPPICKSEIEKLIKESSSSHLNQVKCLKRLRQIVSENTTNKRCLEAAEVPEFLANIVSNSVDTYNSPSSSLSSSNLNDMCQSNMLENRFDSSRSLMDEALSVLYHLDTSETALKSLLNNKKGTNLVKTLTKIMQRGIYESRAYAALLLKKLLEVADP 246          
BLAST of DY260164 vs. ExPASy Swiss-Prot
Match: PUB23_ARATH (U-box domain-containing protein 23 OS=Arabidopsis thaliana GN=PUB23 PE=2 SV=1)

HSP 1 Score: 223.787 bits (569), Expect = 1.455e-57
Identity = 125/247 (50.61%), Postives = 164/247 (66.40%), Query Frame = 3
Query:  135 EEIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAKSPQMQIKCLKKLRSIAAENETNKRCLESARAVEFLASFVTNSNAMEESPEGFDNLHESSRPVHEALSLPCNP*ISELG*KILVGAEWE-PLGIPLPKSWPRETSNSPAKAALFLKSRPEITQPQATPKPRGPKLFVPIVPV 872
            EEI++P FFLCPISL IMKDPV V TGITYDR+SIEKWLFAGK N+CP+TKQ ++ + +LTPNHTLRRLIQSWCTLNASYG+ERIPTP+PPI K++I KL+ ++A S + Q+KCLK+LR I +EN TNKRCLE+A   EFLA+ V+N +             E+     EAL+L  +   SE   K L+  + +  +   L K   R    S   A L LK+  E+  P  +   + P++F  +V +
Sbjct:    8 EEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDIT-DADLTPNHTLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKLIRDSASSHENQVKCLKRLRQIVSENATNKRCLEAAGVPEFLANIVSNDS-------------ENGSLTDEALNLLYHLETSETVLKNLLNNKKDNNIVKSLTKIMQRGMYESRVYATLLLKNILEVADPMQSMTLK-PEVFTEVVQI 239          
BLAST of DY260164 vs. ExPASy Swiss-Prot
Match: PUB25_ARATH (U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 1.161e-30
Identity = 73/162 (45.06%), Postives = 98/162 (60.49%), Query Frame = 3
Query:  141 IDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAK------SPQMQIKCLKKLRSIAAENETNKRCLESARAVEFLA----SFVTNSNAMEES 596
            I +P  F CPISL +M+DPVTV TG TYDR SIE W+  G N TCP+T+  L S+  L PNHTLRRLIQ WC  N S G+ERIPTPK P +   +  LL++A+       S + +   L++LR  A +++ N+  + +  A E L     S  T+S  + ES
Sbjct:   12 IQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTRAPL-SDFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHVSVRSRAAALRRLRGFARDSDKNRVLIAAHNATEILIKILFSETTSSELVSES 172          
BLAST of DY260164 vs. ExPASy Swiss-Prot
Match: PUB26_ARATH (U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.854e-28
Identity = 66/145 (45.52%), Postives = 90/145 (62.07%), Query Frame = 3
Query:  141 IDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAK------SPQMQIKCLKKLRSIAAENETNKRCLESARAVEFL 557
            I +P  F CPISL +M DPVT+ TG TYDR SI+ W+  G N TCP+T+  LS +  L PNHTLRRLIQ WC  N S G+ERIPTPK P +   +  LL++A+       S + +   +++LR +A ++E N+  +    A E L
Sbjct:   12 IQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMG-NTTCPVTRVALS-DFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGTHVSVRSRAAAIRRLRGLARDSEKNRVLIAGHNAREIL 154          
BLAST of DY260164 vs. ExPASy Swiss-Prot
Match: PUB24_ARATH (U-box domain-containing protein 24 OS=Arabidopsis thaliana GN=PUB24 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 2.421e-28
Identity = 72/184 (39.13%), Postives = 103/184 (55.98%), Query Frame = 3
Query:  123 NQLMEEIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAKSPQMQI---KCLKKLRSIAAENETNKRCLESARAVEFLASFVTNSNAMEESPEGFDNLHESSRPVHEALSLPCN 665
            +Q  EEI++P +F+CPISL IMKDPVT  +GITYDR++I KWL   K  +CP+TKQ L  + +LTPNH LRRLIQ WC  N + G+ RI TP+ P  K  + + +    K  Q  +   + L+KL  +A +    +   E       +   V  ++  E+       L ES R +H  + +P N
Sbjct:    2 DQEEEEIEIPNYFICPISLEIMKDPVTTVSGITYDRQNIVKWL--EKVPSCPVTKQPLPLDSDLTPNHMLRRLIQHWCVENETRGVVRISTPRVPPGKLNVVEEIKNLKKFGQEALGREETLQKLEVLAMDGNNRRLMCECGVHKSLILFVVKCTSEDEDGRRRIKGLDESLRLLH-LIGIPSN 182          
BLAST of DY260164 vs. ExPASy Swiss-Prot
Match: PUB20_ARATH (U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.735e-26
Identity = 64/158 (40.51%), Postives = 97/158 (61.39%), Query Frame = 3
Query:  138 EIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAKSPQMQ-----IKCLKKLRSIAAENETNKRCLESARAVEFLA----SFVTNSNA 584
            EI +P+ F CPIS  +MKDPV + +GITYDRE+IEKW  +G   TCP+T  VL+S  E  PNHT+RR+IQ WC  +   GIERIPTP+ P+   Q++++    + + +       ++ + K+  +  E+E N++C++   A   L     +F  N+NA
Sbjct:   30 EITIPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESG-YQTCPVTNTVLTS-LEQIPNHTIRRMIQGWCGSSLGGGIERIPTPRVPVTSHQVSEICERLSAATRRGDYAACMEMVTKMTRLGKESERNRKCVKENGAGLVLCVCFDAFSENANA 185          
BLAST of DY260164 vs. ExPASy Swiss-Prot
Match: PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.243e-24
Identity = 59/137 (43.07%), Postives = 91/137 (66.42%), Query Frame = 3
Query:  138 EIDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKA---QITKLLNEAAKSPQMQIKC---LKKLRSIAAENETNKRCL 530
            EI +P  F CPIS+ +MKDPV + TGITYDR SIE W+ +G N TCP+T  VL++  ++ PNHT+R++IQ WC    S  I+RIPTP+ P+      +I++ L+ A +    + KC   ++K++ +  E+E N++C+
Sbjct:   28 EITIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSG-NKTCPVTNTVLTTFDQI-PNHTIRKMIQGWCVEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDYE-KCGVIIEKIKKLGDESEKNRKCV 161          
BLAST of DY260164 vs. ExPASy Swiss-Prot
Match: SL11_ORYSJ (Protein spotted leaf 11 OS=Oryza sativa subsp. japonica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.866e-21
Identity = 60/154 (38.96%), Postives = 86/154 (55.84%), Query Frame = 3
Query:  141 IDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPI------NKAQITKLLNE-AAKSPQMQIKCLKKLRSIAAENETNKRCLESARAVEFLASFVTNSN 581
            I +P  F CPISL +MKDPV V TG TY+R  IEKW+ +G ++TCP T+Q +S+   LTPN+ LR LI  WC  N     +R   P  P        +A I  LL++  +   + Q     +LR +A  N  N+ C+  A A+  L S +++S+
Sbjct:  271 ITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASG-HHTCPTTQQKMSTSA-LTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSD 422          
BLAST of DY260164 vs. ExPASy Swiss-Prot
Match: SL11_ORYSI (Protein spotted leaf 11 OS=Oryza sativa subsp. indica GN=SPL11 PE=1 SV=2)

HSP 1 Score: 103.219 bits (256), Expect = 2.866e-21
Identity = 60/154 (38.96%), Postives = 86/154 (55.84%), Query Frame = 3
Query:  141 IDVPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPI------NKAQITKLLNE-AAKSPQMQIKCLKKLRSIAAENETNKRCLESARAVEFLASFVTNSN 581
            I +P  F CPISL +MKDPV V TG TY+R  IEKW+ +G ++TCP T+Q +S+   LTPN+ LR LI  WC  N     +R   P  P        +A I  LL++  +   + Q     +LR +A  N  N+ C+  A A+  L S +++S+
Sbjct:  271 ITIPDEFRCPISLELMKDPVIVSTGQTYERACIEKWIASG-HHTCPTTQQKMSTSA-LTPNYVLRSLISQWCETNGMEPPKRSTQPNKPTPACSSSERANIDALLSKLCSPDTEEQRSAAAELRLLAKRNANNRICIAEAGAIPLLLSLLSSSD 422          
BLAST of DY260164 vs. ExPASy Swiss-Prot
Match: PUB15_ARATH (U-box domain-containing protein 15 OS=Arabidopsis thaliana GN=PUB15 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 1.019e-18
Identity = 56/144 (38.89%), Postives = 80/144 (55.56%), Query Frame = 3
Query:  147 VPTFFLCPISLAIMKDPVTVPTGITYDRESIEKWLFAGKNNTCPMTKQVLSSECELTPNHTLRRLIQSWCTLNASYGIERIPTPKPPINKAQITKLLNEAAKSPQM--QIKCLKKLRSIAAENETNKRCLESARAVEFLASFVT 572
            +P  FLCPI+L IM DPV + TG TY++ESI+KW  AG + TCP T+Q L     L PN  L+ LI  WC  N     E+  +P     +     LL EA  S Q+  Q + +K++R +A EN  N+  + +A A+  L   ++
Sbjct:  290 LPHEFLCPITLEIMLDPVIIATGQTYEKESIQKWFDAG-HKTCPKTRQEL-DHLSLAPNFALKNLIMQWCEKNNFKIPEKEVSPDSQNEQKDEVSLLVEALSSSQLEEQRRSVKQMRLLARENPENRVLIANAGAIPLLVQLLS 431          
The following BLAST results are available for this feature:
BLAST of DY260164 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
PUB22_ARATH1.836e-6054.69U-box domain-containing protein 22 OS=Arabidopsis ... [more]
PUB23_ARATH1.455e-5750.61U-box domain-containing protein 23 OS=Arabidopsis ... [more]
PUB25_ARATH1.161e-3045.06U-box domain-containing protein 25 OS=Arabidopsis ... [more]
PUB26_ARATH1.854e-2845.52U-box domain-containing protein 26 OS=Arabidopsis ... [more]
PUB24_ARATH2.421e-2839.13U-box domain-containing protein 24 OS=Arabidopsis ... [more]
PUB20_ARATH1.735e-2640.51U-box domain-containing protein 20 OS=Arabidopsis ... [more]
PUB21_ARATH1.243e-2443.07U-box domain-containing protein 21 OS=Arabidopsis ... [more]
SL11_ORYSJ2.866e-2138.96Protein spotted leaf 11 OS=Oryza sativa subsp. jap... [more]
SL11_ORYSI2.866e-2138.96Protein spotted leaf 11 OS=Oryza sativa subsp. ind... [more]
PUB15_ARATH1.019e-1838.89U-box domain-containing protein 15 OS=Arabidopsis ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YI10FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260164 ID=DY260164; Name=DY260164; organism=Citrus clementina; type=EST; length=1123bp
CAATTCACAGCTTCCCCTCAACTAGAACAACTACTTTTGATCCAATATTT
TCAAAAACCTCTCTAGCCTTCAGATTTTTTTCTCATATATTTTGGGTACT
GTAATTAATTTGAAGAAAAAAAAATCAATTAATGGAAGAAATTGATGTTC
CGACATTTTTTCTGTGCCCAATTTCATTGGCGATCATGAAAGATCCGGTG
ACGGTGCCGACGGGGATAACGTACGATCGGGAAAGCATCGAGAAGTGGTT
ATTTGCCGGCAAAAACAACACGTGTCCGATGACAAAGCAAGTATTATCAT
CAGAATGTGAGCTTACGCCGAACCACACTCTCCGGCGGCTAATTCAATCT
TGGTGCACTCTCAATGCTTCTTATGGCATCGAGAGGATCCCAACGCCGAA
GCCACCCATCAACAAAGCTCAAATCACTAAGCTATTGAATGAAGCAGCTA
AGTCTCCTCAGATGCAAATCAAGTGCCTTAAGAAGCTAAGATCAATCGCG
GCCGAGAATGAAACTAACAAGCGTTGTTTAGAATCTGCCCGAGCGGTTGA
GTTCTTGGCTTCATTTGTGACCAACTCCAATGCTATGGAAGAATCGCCCG
AAGGATTTGATAATTTGCATGAGTCCAGTAGACCGGTCCATGAAGCCCTA
AGCCTTCCTTGTAACCCTTAAATTTCGGAATTAGGTTGAAAAATCCTGGT
AGGGGCAGAATGGGAACCTTTGGGGATTCCTTTACCCAAATCTTGGCCAC
GGGAAACCTCCAATTCCCCAGCCAAGGCCGCCTTGTTTTTGAAATCCAGG
CCTGAAATAACCCAACCCCAAGCCACCCCCAAACCCCGGGGGCCAAAATT
ATTTGTCCCAATTGTTCCAGTTTTTGCCGGAACAATCCCCCCCCCCCCCT
CTTCAAAAACCCCCCCGGAAGTTTGTTTCCCAATTTTTCCCCCGGGGGAA
AAGAAAAAAAAACACAGGCGGGGGAACCCCCCCCCCCCGGTCCTTTTTTA
TTTTCCTCCCCCCTTTTTTTTTCCCCCTAAAAAAAAAGGGGGCCAGGAGA
AAAAAATACCCCACTTCTCGCCCTCTTTTTTTTTTTCTCCTTCGCCCCCC
CCAAAAAGAACACCCACCCTTTT
back to top