DY260166

Overview
NameDY260166
Unique NameDY260166
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length862
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260166_ssr120 microsatellite DY260166_ssr120:120..131. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1440 contig Ccv1_Contig1440:1..862. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 8.079e-76
Identity = 131/187 (70.05%), Postives = 152/187 (81.28%), Query Frame = 2
Query:  158 FGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLV--ENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKGNYSQLESDLEKSQISEKPT 712
            F GT QKC  C+KTVYLVDKL A+ RVYHKACFRCHHC  TLKLSNFNSF+GV+YCR HFDQLFKRTGSLEKSF+GTPK  KPE+    E ++A ++S+ F GTRDKC  C + VYP E+V V+G AYHR+CFKC HGGCTISPSNYIAHEG+LYCKHHHIQLF++KGNYSQLE +   +  +E  T
Sbjct:    4 FTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEKSFDGTPKF-KPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETVAAPAESET 189          

HSP 2 Score: 76.6406 bits (187), Expect = 1.959e-13
Identity = 38/111 (34.23%), Postives = 58/111 (52.25%), Query Frame = 2
Query:  137 AAAMASPFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRD 469
            A  ++S F GT+ KC AC K VY ++++  D   YH+ACF+C H   T+  SN+ + EG LYC+ H  QLFK+ G+  +           E   +N   Q    +   T++
Sbjct:   96 ANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETVAAPAESETQNTETQNAETQNADTQN 206          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: CSRP3_RAT (Cysteine and glycine-rich protein 3 OS=Rattus norvegicus GN=Csrp3 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 59/197 (29.95%), Postives = 92/197 (46.70%), Query Frame = 2
Query:  155 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG-NYSQLESDLEKSQ 694
            P  G   KC ACDKTVY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +P   KP +     N  K S KF G  +KC  C ++VY  EKV   G  +H++CF C+  G ++  +N    +G+LYCK  + + F   G  +  L   +EK +
Sbjct:    2 PNWGGGAKCGACDKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRKYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSP---KPARAATTSNPSKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFPCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTGIGFGGLTHQVEKKE 194          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: CSRP3_MOUSE (Cysteine and glycine-rich protein 3 OS=Mus musculus GN=Csrp3 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 58/197 (29.44%), Postives = 93/197 (47.21%), Query Frame = 2
Query:  155 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG-NYSQLESDLEKSQ 694
            P  G   KC AC+KTVY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +PK   P +     N  K S KF G  +KC  C ++VY  EKV   G  +H++CF+C+  G ++  +N    +G+LYCK  + + F   G  +  L   +EK +
Sbjct:    2 PNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGFGQGAGCLSTDTGEHLGLQFQQSPK---PARAATTSNPSKFSAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTGIGFGGLTQQVEKKE 194          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: CSRP3_HUMAN (Cysteine and glycine-rich protein 3 OS=Homo sapiens GN=CSRP3 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.161e-20
Identity = 58/197 (29.44%), Postives = 94/197 (47.72%), Query Frame = 2
Query:  155 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTG----------------SLEKSFEGTPKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG-NYSQLESDLEKSQ 694
            P  G   KC AC+KTVY  +++  + R +HK CF C  C+  L  +   + E  +YC+  + + +   G                 L   F+ +PK   P + V   N  K + KF G  +KC  C ++VY  EKV   G  +H++CF+C+  G ++  +N    +G+LYCK  + + F   G  +  L   +EK +
Sbjct:    2 PNWGGGAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRYGPKGIGYGQGAGCLSTDTGEHLGLQFQQSPK---PARSVTTSNPSKFTAKF-GESEKCPRCGKSVYAAEKVMGGGKPWHKTCFRCAICGKSLESTNVTDKDGELYCKVCYAKNFGPTGIGFGGLTQQVEKKE 194          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: CSRP2_HUMAN (Cysteine and glycine-rich protein 2 OS=Homo sapiens GN=CSRP2 PE=1 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 51/179 (28.49%), Postives = 85/179 (47.49%), Query Frame = 2
Query:  155 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 655
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+ V+P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:    2 PVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: CSRP2_BOVIN (Cysteine and glycine-rich protein 2 OS=Bos taurus GN=CSRP2 PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 5.323e-19
Identity = 51/179 (28.49%), Postives = 85/179 (47.49%), Query Frame = 2
Query:  155 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 655
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+ V+P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:    2 PVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESVQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: CSRP2_RAT (Cysteine and glycine-rich protein 2 OS=Rattus norvegicus GN=Csrp2 PE=2 SV=3)

HSP 1 Score: 94.3597 bits (233), Expect = 9.079e-19
Identity = 50/179 (27.93%), Postives = 84/179 (46.93%), Query Frame = 2
Query:  155 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 655
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+  +P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:    2 PVWGGGNKCGACGRTVYHAEEVQCDGRTFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: CSRP2_MOUSE (Cysteine and glycine-rich protein 2 OS=Mus musculus GN=Csrp2 PE=2 SV=3)

HSP 1 Score: 93.5893 bits (231), Expect = 1.549e-18
Identity = 50/179 (27.93%), Postives = 84/179 (46.93%), Query Frame = 2
Query:  155 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGT------------PKIVKPEKLVENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 655
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT            P+  +P +   N N  K + K+ G  +KC  C  +VY  EK+   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:    2 PVWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDEEIYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESAQPHRPTTNPNTSKFAQKYGGA-EKCSRCGDSVYAAEKIIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 179          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: CSRP2_COTJA (Cysteine and glycine-rich protein 2 OS=Coturnix coturnix japonica GN=CSRP2 PE=1 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 5.885e-18
Identity = 52/180 (28.89%), Postives = 84/180 (46.67%), Query Frame = 2
Query:  155 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL-------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 655
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT  + + E+L               N N  K + KF G  +KC  C  +VY  EKV   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:    2 PNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESSPSPHRPTTNPNTSKFAQKFGGA-EKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 180          
BLAST of DY260166 vs. ExPASy Swiss-Prot
Match: CSRP2_CHICK (Cysteine and glycine-rich protein 2 OS=Gallus gallus GN=CSRP2 PE=2 SV=3)

HSP 1 Score: 91.6633 bits (226), Expect = 5.885e-18
Identity = 52/180 (28.89%), Postives = 84/180 (46.67%), Query Frame = 2
Query:  155 PFGGTQQKCMACDKTVYLVDKLTADNRVYHKACFRCHHCKGTLKLSNFNSFEGVLYCRPHFDQLFKRTGSLEKSFEGTPKIVKPEKL-------------VENENAQKVSNKFVGTRDKCVGCDRTVYPTEKVSVNGAAYHRSCFKCSHGGCTISPSNYIAHEGKLYCKHHHIQLFREKG 655
            P  G   KC AC +TVY  +++  D R +H+ CF C  C+  L  +     +  +YC+  + + +   G       GT  + + E+L               N N  K + KF G  +KC  C  +VY  EKV   G  +H++CF+C+  G ++  +     EG++YCK  + + F  KG
Sbjct:    2 PNWGGGNKCGACGRTVYHAEEVQCDGRSFHRCCFLCMVCRKNLDSTTVAIHDAEVYCKSCYGKKYGPKGYGYGQGAGTLNMDRGERLGIKPESTPSPHRPTTNPNTSKFAQKFGGA-EKCSRCGDSVYAAEKVIGAGKPWHKNCFRCAKCGKSLESTTLTEKEGEIYCKGCYAKNFGPKG 180          
The following BLAST results are available for this feature:
BLAST of DY260166 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SF3_HELAN8.079e-7670.05Pollen-specific protein SF3 OS=Helianthus annuus G... [more]
CSRP3_RAT2.161e-2029.95Cysteine and glycine-rich protein 3 OS=Rattus norv... [more]
CSRP3_MOUSE2.161e-2029.44Cysteine and glycine-rich protein 3 OS=Mus musculu... [more]
CSRP3_HUMAN2.161e-2029.44Cysteine and glycine-rich protein 3 OS=Homo sapien... [more]
CSRP2_HUMAN5.323e-1928.49Cysteine and glycine-rich protein 2 OS=Homo sapien... [more]
CSRP2_BOVIN5.323e-1928.49Cysteine and glycine-rich protein 2 OS=Bos taurus ... [more]
CSRP2_RAT9.079e-1927.93Cysteine and glycine-rich protein 2 OS=Rattus norv... [more]
CSRP2_MOUSE1.549e-1827.93Cysteine and glycine-rich protein 2 OS=Mus musculu... [more]
CSRP2_COTJA5.885e-1828.89Cysteine and glycine-rich protein 2 OS=Coturnix co... [more]
CSRP2_CHICK5.885e-1828.89Cysteine and glycine-rich protein 2 OS=Gallus gall... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YI13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260166 ID=DY260166; Name=DY260166; organism=Citrus clementina; type=EST; length=862bp
CTGGTTTTTTCCCCTTACATTTTGGTTTCTTTTTTTCTCCTCATTATCAT
CAATAAAACACAAAAAAAGAAGAAGTTGCTTCTCTTAATATAATAAATCT
GAGGTTCGGTTGGACCGGAAGCTAGCTAGCTAGCAAGCAGCAGCCATGGC
ATCACCCTTTGGAGGAACCCAACAAAAATGCATGGCCTGTGACAAAACTG
TGTACCTTGTTGATAAGTTGACGGCCGATAATCGGGTCTATCACAAAGCT
TGCTTCCGGTGCCACCATTGCAAAGGAACCCTCAAGCTCAGCAACTTCAA
TTCCTTTGAGGGGGTCCTGTATTGCAGGCCTCACTTTGATCAGCTCTTCA
AGAGAACTGGCAGCCTGGAGAAGAGTTTTGAAGGAACACCAAAGATTGTG
AAACCTGAAAAGCTCGTTGAAAATGAGAATGCACAGAAAGTCTCCAACAA
GTTTGTGGGCACCAGAGATAAATGTGTGGGATGCGATAGGACTGTTTATC
CAACTGAGAAGGTTTCTGTAAATGGCGCCGCATATCATAGGAGCTGCTTC
AAGTGCAGCCATGGAGGTTGCACCATCAGCCCATCAAATTATATTGCCCA
TGAGGGGAAACTCTACTGCAAGCATCATCACATACAACTCTTCAGGGAGA
AAGGAAACTACAGCCAGCTTGAGAGTGATCTTGAGAAGAGTCAAATCTCT
GAGAAGCCAACTCCTGTCCAAATTGCTGCCCAATCATAACTTCAAGTGGA
TTTTTTTATTATTAATATTTGTAGAATTTGGTGCGTAAACCGAACTCCTT
TCCGAACTTTGTTGTGGGTGTTTGATCCAATTACAATTTGGGGCACTGAT
GGTATTTCCTTG
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