DY260173

Overview
NameDY260173
Unique NameDY260173
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1001
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260173_ssr84 microsatellite DY260173_ssr84:84..98. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260173_ssr895 microsatellite DY260173_ssr895:895..906. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260173 vs. ExPASy Swiss-Prot
Match: STHY_ARATH (Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2)

HSP 1 Score: 208.379 bits (529), Expect = 5.426e-53
Identity = 108/194 (55.67%), Postives = 129/194 (66.49%), Query Frame = 3
Query:  216 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGLEPADPGAXXXXXXXXXGENILDMKSHSLSRRDAL---------MPVAAECKEVLPASSGGVGDFAMNKVPF-AGGSAAGSTPSWHMDE 767
            M+IQCNVCEAAEA VLCCADEAALCW CD+K+HAANKLA KHQRVPLS+S++ +PKCDICQE SGFFFCLQDRALLCRKCDVAIHT N +VSAHQRFLLTG+KVGLE  D G           +  ++ K    S  +                + + V+P +   V D    K+P  + GS  GS P W ++E
Sbjct:    1 MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDICQEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLESIDTG-PSTKSSPTNDDKTMETKPFVQSIPEPQKMAFDHHHHQQQQEQQEGVIPGTK--VNDQTSTKLPLVSSGSTTGSIPQWQIEE 191          
BLAST of DY260173 vs. ExPASy Swiss-Prot
Match: STO_ARATH (Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.098e-37
Identity = 71/106 (66.98%), Postives = 87/106 (82.08%), Query Frame = 3
Query:  216 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGL 533
            M+IQC+VCE A A V+CCADEAALC +CD ++HAANKLASKHQR+ L+S ST+ P+CDICQE + F FC++DRALLCR CD +IH ANS  + HQRFL TG+KV L
Sbjct:    1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDICQEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVAL 106          
BLAST of DY260173 vs. ExPASy Swiss-Prot
Match: STH_ARATH (Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.939e-34
Identity = 67/106 (63.21%), Postives = 82/106 (77.36%), Query Frame = 3
Query:  216 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGL 533
            M+IQC+VCE A A ++CCADEAALC +CD +VHAANKLASKHQR+ L S ST+ P CDIC E + F FC++DRALLCR CD A H  N+  + HQRFL TG++V L
Sbjct:    1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDICLEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVAL 106          
BLAST of DY260173 vs. ExPASy Swiss-Prot
Match: STHX_ARATH (Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 5.280e-32
Identity = 80/208 (38.46%), Postives = 109/208 (52.40%), Query Frame = 3
Query:  216 MRIQCNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPL---SSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGLEPADPGAXXXXXXXXXGENILDMKSHSLSRRDAL-MPVAA--ECKEVLPASSGGVGDFAMNK---VPFAGGSAAGSTPSWHMDEFLAPSRTPPKYKPSG 812
            M+I+C+VC+  EA V C ADEA+LC  CD +VH ANKLASKH R  L   SSS+T  P CDICQ+     FC QDRA+LC+ CD +IH AN +   H RFLLTGVK+    +                   +   S+S    L  P++A  +  ++ P S    GD ++N+             + P WH+++FL  S     +  SG
Sbjct:    1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLCDICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKSSSSSSSNQDFSVPGSSISNPPPLKKPLSAPPQSNKIQPFSKINGGDASVNQWGSTSTISEYLMDTLPGWHVEDFLDSSLPTYGFSKSG 208          
BLAST of DY260173 vs. ExPASy Swiss-Prot
Match: COL1_ARATH (Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.182e-15
Identity = 41/92 (44.57%), Postives = 50/92 (54.35%), Query Frame = 3
Query:  228 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 503
            C+ C +A   V C AD A LC  CD +VHAAN+LAS+H+RV +         C  C+     FFC  D A LC  CD  IH+AN     HQR
Sbjct:   12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAPAAFFCKADAASLCTTCDSEIHSANPLARRHQR 94          
BLAST of DY260173 vs. ExPASy Swiss-Prot
Match: COL3_ARATH (Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.491e-15
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 3
Query:  228 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLTGVKVGLEPA 542
            C+ C++  A + C AD A LC +CD K+H ANKLAS+H+RV L         C++C++      C  D A LC  CD  IH+AN     H+R  +T     + PA
Sbjct:    8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPA 103          
BLAST of DY260173 vs. ExPASy Swiss-Prot
Match: COL2_ARATH (Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.660e-15
Identity = 39/92 (42.39%), Postives = 49/92 (53.26%), Query Frame = 3
Query:  228 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 503
            C+ C +A   V C AD A LC  CD +VHAAN++AS+H+RV +         C  C+     F C  D A LC  CD  IH+AN     HQR
Sbjct:   16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV---------CQSCESAPAAFLCKADAASLCTACDAEIHSANPLARRHQR 98          
BLAST of DY260173 vs. ExPASy Swiss-Prot
Match: COL4_ARATH (Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 1.307e-14
Identity = 40/96 (41.67%), Postives = 53/96 (55.21%), Query Frame = 3
Query:  228 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRFLLT 515
            C+ C++A A + C  D A LC  CD KVHAANKLAS+H RV +         C++C++      C  D A LC  CD  IH+AN     H+R  +T
Sbjct:    6 CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM---------CEVCEQAPAHVTCKADAAALCVTCDRDIHSANPLARRHERVPVT 92          
BLAST of DY260173 vs. ExPASy Swiss-Prot
Match: CONS_ARATH (Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.445e-13
Identity = 36/92 (39.13%), Postives = 49/92 (53.26%), Query Frame = 3
Query:  228 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQR 503
            C+ C +    V C AD A LC  CD +VH+AN++AS+H+RV +         C+ C+     F C  D A LC  CD  +H+AN     HQR
Sbjct:   20 CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV---------CESCERAPAAFLCEADDASLCTACDSEVHSANPLARRHQR 102          
BLAST of DY260173 vs. ExPASy Swiss-Prot
Match: COL13_ARATH (Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsis thaliana GN=COL13 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.363e-13
Identity = 37/93 (39.78%), Postives = 53/93 (56.99%), Query Frame = 3
Query:  228 CNVCEAAEAKVLCCADEAALCWECDDKVHAANKLASKHQRVPLSSSSTQMPKCDICQETSGFFFCLQDRALLCRKCDVAIHTANSYVSAHQRF 506
            C+ C+++ A V C AD A LC  CD +VH AN+L +KH R  L         CD C E+    FC  +R++LC+ CD   HTA+S + + + F
Sbjct:   13 CDYCDSSVALVYCKADSAKLCLACDKQVHVANQLFAKHFRSLL---------CDSCNESPSSLFCETERSVLCQNCDWQHHTASSSLHSRRPF 96          
The following BLAST results are available for this feature:
BLAST of DY260173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
STHY_ARATH5.426e-5355.67Probable salt tolerance-like protein At1g78600 OS=... [more]
STO_ARATH1.098e-3766.98Salt tolerance protein OS=Arabidopsis thaliana GN=... [more]
STH_ARATH1.939e-3463.21Salt tolerance-like protein OS=Arabidopsis thalian... [more]
STHX_ARATH5.280e-3238.46Probable salt tolerance-like protein At1g75540 OS=... [more]
COL1_ARATH1.182e-1544.57Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis... [more]
COL3_ARATH4.491e-1539.05Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis... [more]
COL2_ARATH7.660e-1542.39Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... [more]
COL4_ARATH1.307e-1441.67Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis... [more]
CONS_ARATH1.445e-1339.13Zinc finger protein CONSTANS OS=Arabidopsis thalia... [more]
COL13_ARATH9.363e-1339.78Zinc finger protein CONSTANS-LIKE 13 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YI21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260173 ID=DY260173; Name=DY260173; organism=Citrus clementina; type=EST; length=1001bp
GCTGATTATAAGACTTTCACTACAAAATGCCACGCGTTTAACGCCTTCTC
AGCCTCACAAAAATATCCCATTTCCGTTTCATTTTATTATTATTATTAGT
TTTTACGTCTCTCCCTCCATCTCACTCACCAAGTGGTTCGGCAAAATCCT
TTTACAAAATTAAAAAACGACGTCGTTTCGATTCTTTTGTGGTCTCGCGG
TTTACACAGAGAGAGATGAGGATACAGTGCAACGTATGCGAGGCGGCGGA
GGCGAAGGTGCTGTGCTGCGCCGACGAGGCGGCGCTGTGCTGGGAGTGCG
ACGACAAAGTTCACGCCGCCAATAAGCTAGCGAGCAAGCACCAGAGAGTC
CCTCTCTCCTCTTCTTCGACACAAATGCCCAAGTGTGATATCTGTCAGGA
AACATCTGGCTTTTTCTTTTGTCTACAAGATCGAGCCTTACTCTGCAGGA
AATGTGATGTTGCCATACACACAGCGAATAGCTATGTGTCTGCTCATCAG
AGATTTTTGCTTACTGGAGTAAAAGTAGGTCTTGAACCAGCTGATCCTGG
TGCTTCATCTTCCTCTATTAAGTCACTATCTGGGGAAAACATTTTGGACA
TGAAATCCCATTCCCTGTCTAGAAGGGACGCCCTGATGCCAGTGGCTGCT
GAATGCAAAGAAGTTTTACCTGCTAGTTCTGGTGGAGTTGGCGACTTTGC
AATGAACAAAGTCCCATTTGCTGGGGGGTCTGCCGCTGGAAGCACTCCGT
CGTGGCACATGGATGAATTTCTAGCACCTTCCCGAACCCCACCAAAATAT
AAACCTTCTGGGAAAATGGGTCATCTAAGGCGGAAAGTGGCAAACGGGGA
AACTCCGACCGCCTCTCCATCCTAAGAATCCGCGAAGAAAAACCAGAAGA
AGAAGAGTGGTTGGGGTAAGGTTTCCCAAAGCCTCCTGGGCCGGGGGCCC
AAATTCCCCTTCTCCCCCTATCAGCACCGGGGGGCCCACTGGGCCACAAC
A
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