DY260177

Overview
NameDY260177
Unique NameDY260177
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length989
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14666 contig Ccv1_Contig14666:4..992. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260177 vs. ExPASy Swiss-Prot
Match: STT4_SCHPO (Phosphatidylinositol 4-kinase stt4 OS=Schizosaccharomyces pombe GN=stt4 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 6.092e-26
Identity = 50/164 (30.49%), Postives = 88/164 (53.66%), Query Frame = 1
Query:    4 PTLFQAPPYHDERLVEGYLLRATPRSDIFAPILIWHLQGETFVPESGKEKDANSVKNGSFQTLLPMVRPPIIDGFNPKALDLFQREFDFFDKVTNISGALYPL---PKEERRAGIRRELEKIEMAGEDLYLPTAPNKLVRGLRVDSGIPLQSAAQVPIMITFNV 486
            P + Q+  Y      E ++L  +  S +FA  ++W+++   +  E+    D       S + +L  V   +I+  + +    ++REF FF++VT+ISG L P     K E++A I  E++KI++    +YLP+ P+ ++ G+   SG PLQS A+ P M TF +
Sbjct: 1429 PQIVQSLRYDSMGYAESFILETSGTSQLFAHQILWNMKANLYKDEAATVPD-------SIKPILDRVMDKMINSLSGEDKQFYEREFTFFNEVTSISGKLKPFIRKSKPEKKAKIDEEMKKIKL-DVGVYLPSNPDGVIVGIDRKSGKPLQSHAKAPFMATFKI 1584          

HSP 2 Score: 40.817 bits (94), Expect = 6.092e-26
Identity = 16/30 (53.33%), Postives = 25/30 (83.33%), Query Frame = 2
Query:  527 ACIFQVGDDCRQDVLALPVISLLRDLFEAV 616
            + IF+VGDDCRQDVL L +I++ +++F +V
Sbjct: 1620 SAIFKVGDDCRQDVLTLQLIAMFKNIFNSV 1649          

HSP 3 Score: 35.039 bits (79), Expect = 6.092e-26
Identity = 17/40 (42.50%), Postives = 24/40 (60.00%), Query Frame = 3
Query:  621 LNLYLFPYGVPPTGPERGIIEVVP*TPSKSPMGPTTDGGL 740
            L++YLFPY V  T P  G+I+V+P   S+  +G     GL
Sbjct: 1651 LDVYLFPYRVTATNPGCGVIDVLPNCISRDMLGREAVNGL 1690          
BLAST of DY260177 vs. ExPASy Swiss-Prot
Match: STT4_YEAST (Phosphatidylinositol 4-kinase STT4 OS=Saccharomyces cerevisiae GN=STT4 PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.303e-23
Identity = 53/164 (32.32%), Postives = 83/164 (50.61%), Query Frame = 1
Query:    4 PTLFQAPPYHDERLVEGYLLRATPRSDIFAPILIWHLQGETFVPESGKEKDANSVKNGSFQTLLPMVRPPIIDGFNPKALDLFQREFDFFDKVTNISGALYPL---PKEERRAGIRRELEKIEMAGEDLYLPTAPNKLVRGLRVDSGIPLQSAAQVPIMITFNV 486
            P + Q   Y     VE  +L     S +F+  +IW++    +       KD   ++    +  L  +R  ++  F+    D ++REF+FFD+VT ISG L P     K E++  I  E+ KIE+   D+YLP+ P+ +V  +   SG PLQS A+ P M TF +
Sbjct: 1468 PQIVQCLRYDKTGYVERLILDTAKISVLFSHQIIWNMLANCY-------KDDEGIQEDEIKPTLDRIRERMVSSFSQSHRDFYEREFEFFDEVTGISGKLKPYIKKSKAEKKHKIDEEMSKIEVK-PDVYLPSNPDGVVIDIDRKSGKPLQSHAKAPFMATFKI 1623          

HSP 2 Score: 43.8986 bits (102), Expect = 7.303e-23
Identity = 22/45 (48.89%), Postives = 31/45 (68.89%), Query Frame = 2
Query:  527 ACIFQVGDDCRQDVLALPVISLLRDLFEAVRT*SLSVSLWCSPHR 661
            A IF+VGDDCRQDVLAL +ISL R ++      S+ + ++  P+R
Sbjct: 1643 AAIFKVGDDCRQDVLALQLISLFRTIWS-----SIGLDVYVFPYR 1682          
BLAST of DY260177 vs. ExPASy Swiss-Prot
Match: PI4KA_HUMAN (Phosphatidylinositol 4-kinase alpha OS=Homo sapiens GN=PI4KA PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 1.239e-17
Identity = 61/195 (31.28%), Postives = 92/195 (47.18%), Query Frame = 1
Query:    4 PTLFQAPPYHDERLVEGYLLRATPRSDIFAPILIWHLQGETFVPESGKEKDANSVKNGSFQTLLPMVRPPIIDGFNPKALDLFQREFDFFDKVTNISGALYPLPK-EERRAGIRRELEKIEMAGEDLYLPTAPNKLVRGLRVDSGIPLQSAAQVPIMITFNVVDPGW*SKQCDAPSLHFPGWR*LPTRCSCSSSD 585
            P + QA  Y     V  Y+L A  +S + A   IW+++   ++ E G +KD +         LL  +   I    +  A D +QREFDFF+K+TN+S  + P PK +ER+      L ++++     YLP+ P  +V  +   SG P+QSAA+ P +  F V       K+C    L   G      RC   S D
Sbjct: 1597 PQIVQALRYDKMGYVREYILWAASKSQLLAHQFIWNMKTNIYLDEEGHQKDPD------IGDLLDQLVEEITGSLSGPAKDFYQREFDFFNKITNVSAIIKPYPKGDERKKACLSALSEVKVQ-PGCYLPSNPEAIVLDIDYKSGTPMQSAAKAPYLAKFKV-------KRCGVSELEKEG-----LRCRSDSED 1772          
BLAST of DY260177 vs. ExPASy Swiss-Prot
Match: PI4KA_BOVIN (Phosphatidylinositol 4-kinase alpha OS=Bos taurus GN=PI4KA PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.239e-17
Identity = 59/183 (32.24%), Postives = 89/183 (48.63%), Query Frame = 1
Query:    4 PTLFQAPPYHDERLVEGYLLRATPRSDIFAPILIWHLQGETFVPESGKEKDANSVKNGSFQTLLPMVRPPIIDGFNPKALDLFQREFDFFDKVTNISGALYPLPK-EERRAGIRRELEKIEMAGEDLYLPTAPNKLVRGLRVDSGIPLQSAAQVPIMITFNVVDPGW*SKQCDAPSLHFPGWR 549
            P + QA  Y     V  Y+L A  +S + A   IW+++   +V E G +KD +         LL  +   I    +  A D +QREFDFF+K+TN+S  + P PK +ER+      L ++++     YLP+ P  +V  +   SG P+QSAA+ P +  F V       K+C    L   G R
Sbjct: 1596 PQIVQALRYDKMGYVREYILWAASQSQLLAHQFIWNMKTNIYVDEEGHQKDPD------IGDLLEQLVEEITGSLSGPAKDFYQREFDFFNKITNVSAIIKPYPKGDERKKACLSALSEVKVQ-PGCYLPSNPEAIVLDIDYKSGTPMQSAAKAPYLAKFKV-------KRCGVSELEKEGLR 1764          
BLAST of DY260177 vs. ExPASy Swiss-Prot
Match: STT4_ENCCU (Probable phosphatidylinositol 4-kinase STT4 homolog OS=Encephalitozoon cuniculi GN=STT4 PE=3 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 8.139e-12
Identity = 42/149 (28.19%), Postives = 73/149 (48.99%), Query Frame = 1
Query:   61 LRATPRSDIFAPILIWHLQGETFVPESGKEKDANSVKNGSFQTLLPMVRPPIIDGFNPKALDLFQREFDFFDKVTNISGALYP---LPKEERRAGIRRELEKIEMAGEDLYLPTAPNKLVRGLRVDSGIPLQSAAQVPIMITFNVVDPG 498
            L+   + +  A  LIW+L+   +V      + A +  +G+F   +  +   + DG    + D+F +E +F   +T IS  L P     K+E+R  I   L +I++    +Y+P  P+  +  +   S   LQS ++VP M +F V DPG
Sbjct: 1033 LKELAKDEYVAHQLIWNLKANLYVDG----RAAVNNYHGTFVRCIEEIMKEMPDG----SRDIFLKEEEFISSLTKISSELTPHLRSSKDEKRRRINEYLSRIKLH-PGIYIPFYPDLKIIEIVNGSARALQSHSKVPFMASFRVQDPG 1172          

HSP 2 Score: 37.7354 bits (86), Expect = 8.139e-12
Identity = 15/26 (57.69%), Postives = 21/26 (80.77%), Query Frame = 2
Query:  533 IFQVGDDCRQDVLALPVISLLRDLFE 610
            IF+ GDDCRQD+LAL +IS+   +F+
Sbjct: 1181 IFKSGDDCRQDMLALQIISMFESIFK 1206          
The following BLAST results are available for this feature:
BLAST of DY260177 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
STT4_SCHPO6.092e-2630.49Phosphatidylinositol 4-kinase stt4 OS=Schizosaccha... [more]
STT4_YEAST7.303e-2332.32Phosphatidylinositol 4-kinase STT4 OS=Saccharomyce... [more]
PI4KA_HUMAN1.239e-1731.28Phosphatidylinositol 4-kinase alpha OS=Homo sapien... [more]
PI4KA_BOVIN1.239e-1732.24Phosphatidylinositol 4-kinase alpha OS=Bos taurus ... [more]
STT4_ENCCU8.139e-1228.19Probable phosphatidylinositol 4-kinase STT4 homolo... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YJ02FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260177 ID=DY260177; Name=DY260177; organism=Citrus clementina; type=EST; length=989bp
TGCCCCACCCTTTTTCAGGCCCCTCCATACCATGATGAGAGATTGGTAGA
AGGGTATTTGCTTAGAGCCACTCCAAGAAGTGATATATTTGCGCCTATAC
TGATATGGCATCTACAGGGTGAGACATTTGTACCAGAATCTGGGAAAGAG
AAAGATGCTAACTCTGTGAAGAATGGTTCGTTTCAAACATTGTTGCCCAT
GGTTCGGCCGCCTATTATTGATGGTTTCAATCCCAAGGCCCTTGATTTGT
TTCAAAGAGAGTTTGACTTCTTTGACAAAGTTACTAATATTTCTGGTGCA
CTGTATCCGCTTCCCAAGGAAGAACGTCGAGCTGGTATCCGGAGGGAGTT
GGAAAAAATTGAAATGGCGGGAGAAGACCTTTATCTACCAACTGCCCCTA
ACAAGCTTGTAAGGGGCCTCCGGGTGGATAGTGGAATACCTTTACAGTCA
GCAGCCCAAGTTCCTATTATGATCACATTTAATGTGGTGGACCCGGGATG
GTGATCCAAGCAATGTGATGCCCCCAGCTTGCATTTTCCAGGTTGGAGAT
GATTGCCGACAAGATGTTCTTGCTCTTCCAGTGATTTCCCTTCTTAGAGA
CCTATTTGAAGCCGTCCGCACTTAATCTCTATCTGTTTCCCTATGGTGTT
CCCCCCACCGGTCCAGAGAGAGGTATAATTGAGGTTGTGCCCTAAACCCC
CAGTAAAAGTCCCATGGGCCCAACAACCGATGGCGGTTTGAATCAAATTT
CCCACCAGGACTCTGGACCCGGTGGTTCCCCCACTTTTCAACCCGCCCCA
CAAAATTTTCCCCCTAGCCCCCCTGGGTATGCCGTTCCCAGCTAATTCCC
CCCCCCCAGGGCAAGGCCCAAGGGAAAACCTCCCTTTCTACAACCTCCCG
CGGGCCGGGCCCCCCTTTGATTCTTGGTTCCCCTTTCGGACACCCCCCCC
CCGGCACAACCCCGGCCCTTTTGAAAATGCCCCCCTCCC
back to top