DY260178

Overview
NameDY260178
Unique NameDY260178
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1009
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14667 contig Ccv1_Contig14667:3..1011. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260178 vs. ExPASy Swiss-Prot
Match: HEBP2_HUMAN (Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.325e-14
Identity = 54/182 (29.67%), Postives = 87/182 (47.80%), Query Frame = 1
Query:  103 KAIESPQYAVVHEES----DFEVRLYSPSTWMSACVREELSFAQATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFLGPVNEI 636
            +A+E+P +    +       +E+R Y P+ W+S  V E + +  A   GF +L  YIQG N    +I MT+P+ + + PG+GP       ++LY+P + Q DPP PL E  +   +     V VR F GF+  +   ++   L+  LR               Y  A Y+ P++ L   NE+
Sbjct:   18 QAVETPGWKAPEDAGPQPGSYEIRHYGPAKWVSTSV-ESMDWDSAIQTGFTKLNSYIQGKNEKEMKIKMTAPVTSYVEPGSGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEMTVFVRSFDGFSSAQKNQEQLLTLASILREDGKVFDEK-----VYYTAGYNSPVKLLNRNNEV 192          
BLAST of DY260178 vs. ExPASy Swiss-Prot
Match: HEBP2_MOUSE (Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.260e-14
Identity = 54/182 (29.67%), Postives = 85/182 (46.70%), Query Frame = 1
Query:  103 KAIESPQYAVVHE----ESDFEVRLYSPSTWMSACVREELSFAQATLLGFHRLFQYIQGANLNNSRIAMTSPIVTSLVPGAGPLHSYAYVVTLYLPDKFQSDPPTPLPEIHLNPFEWDSHCVAVRKFSGFAIDEVIVKEADNLSFSLRRSPWANSTSSDSGYAYSVAQYSPPLQFLGPVNEI 636
            +A+E P +    +       +E+R Y P+ W+S CV E L +  A   GF +L  YIQG N    +I +T+P+ + + PG+ P       ++LY+P + Q DPP P  E  +   +     V VR F GF+  +   ++   L+  LR      +        +  A YS P Q L   NE+
Sbjct:   18 QALEMPSWKAPEDIDPQPGSYEIRHYGPAKWVSTCV-ESLDWDSAIQTGFTKLNGYIQGKNEKEMKIKLTAPVTSYVEPGSSPFSESTITISLYIPSEQQPDPPRP-SESDVFIEDRAEMTVFVRSFDGFSSGQKNQEQLLTLANILREEGKVFNEK-----VFYTAGYSSPFQLLDRNNEV 192          
The following BLAST results are available for this feature:
BLAST of DY260178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
HEBP2_HUMAN1.325e-1429.67Heme-binding protein 2 OS=Homo sapiens GN=HEBP2 PE... [more]
HEBP2_MOUSE2.260e-1429.67Heme-binding protein 2 OS=Mus musculus GN=Hebp2 PE... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260178 ID=DY260178; Name=DY260178; organism=Citrus clementina; type=EST; length=1009bp
TGTATGACTTTTGAGAAATGAGATTTGAGAGAGGGGTCAACAATGGAGGG
AGCGAGTAAGTTAATGAAGCTGGCGACTCTTCTGTGTATGGTGGTACTAT
GTAAGGCGATCGAGTCCCCGCAGTACGCGGTTGTACACGAAGAATCGGAT
TTCGAAGTCCGACTTTATAGTCCGTCCACGTGGATGTCTGCCTGTGTTCG
TGAAGAACTCTCCTTTGCCCAAGCCACCTTACTCGGCTTCCACAGGTTGT
TCCAATACATTCAAGGTGCCAATCTAAACAACTCTCGGATTGCAATGACC
TCTCCTATTGTTACAAGCTTAGTTCCAGGAGCTGGTCCTCTTCACTCGTA
TGCCTATGTTGTGACTTTGTACTTGCCTGACAAGTTCCAATCTGATCCTC
CAACGCCCTTACCAGAAATTCATCTGAATCCCTTTGAATGGGACAGTCAC
TGTGTTGCTGTCAGGAAGTTTTCTGGATTTGCAATTGATGAAGTCATCGT
GAAAGAGGCAGATAACCTTTCCTTCAGCTTGAGGAGGTCTCCTTGGGCTA
ACTCTACTTCTTCAGATAGCGGTTATGCTTACTCCGTTGCACAGTATAGT
CCTCCCTTGCAGTTCCTTGGTCCTGTAAATGAGATCCGGGTGGATATTGA
TGTTTCTGGAATAAACAGCTGCCAAACCCGGTGCTGTAGCTTCCTATTAA
ATTGAAGAAGTACCGCAGAATAAGTGGGCTGACTGGGGTCGGTTTCCCGG
TCCCAAGTGCCTGCCTCAAGAATTCACCTAAACCACATTGATCGGGTCCC
AACTTCCTAATCCATCCCATATGGCACACTAATCCCAGTCCCGCGCAAAA
AACTCAATGGGAACTTCCCCCTTTGGTTTCCCCCGAACCCTTCAGGCCCA
TGGGGGAAAAATTTTTTAACCAACCCCCTCTCCTTTAATTTTCCAAAACC
CCTCTCTCCCCTCCCATGTTTGACAACCCCATCCCAACTCTCTGCAGTCT
CCATTCCCC
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