DY260182

Overview
NameDY260182
Unique NameDY260182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1059
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260182 vs. ExPASy Swiss-Prot
Match: GME1_ORYSJ (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. japonica GN=GME-1 PE=1 SV=1)

HSP 1 Score: 501.901 bits (1291), Expect = 2.561e-141
Identity = 242/264 (91.67%), Postives = 249/264 (94.32%), Query Frame = 3
Query:   33 MGSSE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFPFLDECVEGVPTLAIAGF 815
            MGSSE  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLA+EELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKA TSTD+FEMWGDGLQTRSF F+DECVEGV  L  + F
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDF 264          
BLAST of DY260182 vs. ExPASy Swiss-Prot
Match: GME1_ORYSI (GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp. indica GN=OsI_032456 PE=2 SV=1)

HSP 1 Score: 499.59 bits (1285), Expect = 1.271e-140
Identity = 241/264 (91.29%), Postives = 248/264 (93.94%), Query Frame = 3
Query:   33 MGSSE--GT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFPFLDECVEGVPTLAIAGF 815
            MGSSE  GT YG YTY ELERE YWPSEKLRIS+TGAGGFI SHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT  VDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLA+EELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKA TSTD+FEMWGDGLQTRSF F+DECVEGV  L  + F
Sbjct:    1 MGSSEKNGTAYGEYTYAELEREQYWPSEKLRISITGAGGFIGSHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTNSVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDF 264          
BLAST of DY260182 vs. ExPASy Swiss-Prot
Match: GME2_ORYSJ (GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp. japonica GN=GME-2 PE=2 SV=2)

HSP 1 Score: 491.5 bits (1264), Expect = 3.462e-138
Identity = 232/251 (92.43%), Postives = 241/251 (96.02%), Query Frame = 3
Query:   63 YTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFPFLDECVEGVPTLAIAGF 815
            YTY ELE+EPYWP EKLRIS+TGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVT GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEA+RI+GVKRFFYASSACIYPEFKQL+T VSLKESDAWPAEPQDAYGLEKLA+EELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTD+FEMWGDGLQTRSF F+DECVEGV  L  + F
Sbjct:    7 YTYVELEKEPYWPFEKLRISITGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTTGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEAARINGVKRFFYASSACIYPEFKQLDTVVSLKESDAWPAEPQDAYGLEKLATEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDF 257          
BLAST of DY260182 vs. ExPASy Swiss-Prot
Match: GME_ARATH (GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana GN=At5g28840 PE=1 SV=1)

HSP 1 Score: 488.804 bits (1257), Expect = 2.244e-137
Identity = 231/263 (87.83%), Postives = 248/263 (94.30%), Query Frame = 3
Query:   33 MGSSEGT-YGAYTYEELEREPYWPSEKLRISVTGAGGFIASHIARRLKSEGHYIIASDWKKNEHMTEDMFCHEFHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLE-TNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFPFLDECVEGVPTLAIAGF 815
            MG++ GT YGAYTY+ELERE YWPSE L+IS+TGAGGFIASHIARRLK EGHY+IASDWKKNEHMTEDMFC EFHLVDLRVM+NCLKVT+GVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNM+EA+RI+G+KRFFYASSACIYPEFKQLE TNVSLKESDAWPAEPQDAYGLEKLA+EELCKHY KDFGIECR+GRFHNIYGPFGTWKGGREKAPAAFCRKA TSTD+FEMWGDGLQTRSF F+DECVEGV  L  + F
Sbjct:    1 MGTTNGTDYGAYTYKELEREQYWPSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKKNEHMTEDMFCDEFHLVDLRVMENCLKVTEGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMIEAARINGIKRFFYASSACIYPEFKQLETTNVSLKESDAWPAEPQDAYGLEKLATEELCKHYNKDFGIECRIGRFHNIYGPFGTWKGGREKAPAAFCRKAQTSTDRFEMWGDGLQTRSFTFIDECVEGVLRLTKSDF 263          
BLAST of DY260182 vs. ExPASy Swiss-Prot
Match: YTCB_BACSU (Uncharacterized UDP-glucose epimerase ytcB OS=Bacillus subtilis GN=ytcB PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 6.759e-17
Identity = 70/240 (29.17%), Postives = 114/240 (47.50%), Query Frame = 3
Query:  111 LRISVTGAGGFIASHIARRL-KSEGHYIIASD--------WKKNEHMTEDMFCHEFHLVDLRVMDNCL-KVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFK-QLETNVSLKESDAWPAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCR--KALTSTDKFEMWGDGLQTRSFPFLDECVEGV 791
            ++I VTGA GFI SH+   L K + H +I  D          K +++   +    F  +   ++   L  + +GVD +F+LAA  G      ++      +N      +LEA R   ++ F +AS++ +Y E + ++  N SL         P   YG+ KL  E+LC  Y + FGI   + RF  +YGP       R++   AF R  K         ++GDG Q+R F ++ +CV+G+
Sbjct:    1 MKILVTGAAGFIGSHLCEELLKDKKHNVIGIDDFIGPTPFSLKLKNLKNLLPEKRFTFIKENLLTADLASLLEGVDVIFHLAAIPGVRSSWGNHFHPYAAHNIQALQRLLEACREHSIQTFVFASTSSVYGEKQGKVSENTSLS--------PLSPYGVTKLTGEKLCHVYKQSFGIPIVILRFFTVYGP-------RQRPDMAFHRLIKQHLQQKPLTIFGDGQQSRDFTYISDCVKGI 225          
BLAST of DY260182 vs. ExPASy Swiss-Prot
Match: UXS1_RAT (UDP-glucuronic acid decarboxylase 1 OS=Rattus norvegicus GN=Uxs1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.409e-14
Identity = 66/239 (27.62%), Postives = 112/239 (46.86%), Query Frame = 3
Query:  105 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFPFLDECVEGVPTL 800
            ++ RI +TG  GF+ SH+  +L  +GH +   D  +   +   E    HE F L++  V++    +   VD +++LA+      ++  N    +  NT+ + NML  ++  G  R   AS++ +Y +       V  +  D W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   +   ++G G QTR+F ++ + V G+  L
Sbjct:   87 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVAL 312          
BLAST of DY260182 vs. ExPASy Swiss-Prot
Match: UXS1_PONAB (UDP-glucuronic acid decarboxylase 1 OS=Pongo abelii GN=UXS1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.409e-14
Identity = 66/239 (27.62%), Postives = 112/239 (46.86%), Query Frame = 3
Query:  105 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFPFLDECVEGVPTL 800
            ++ RI +TG  GF+ SH+  +L  +GH +   D  +   +   E    HE F L++  V++    +   VD +++LA+      ++  N    +  NT+ + NML  ++  G  R   AS++ +Y +       V  +  D W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   +   ++G G QTR+F ++ + V G+  L
Sbjct:   87 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVAL 312          
BLAST of DY260182 vs. ExPASy Swiss-Prot
Match: UXS1_MOUSE (UDP-glucuronic acid decarboxylase 1 OS=Mus musculus GN=Uxs1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.409e-14
Identity = 66/239 (27.62%), Postives = 112/239 (46.86%), Query Frame = 3
Query:  105 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFPFLDECVEGVPTL 800
            ++ RI +TG  GF+ SH+  +L  +GH +   D  +   +   E    HE F L++  V++    +   VD +++LA+      ++  N    +  NT+ + NML  ++  G  R   AS++ +Y +       V  +  D W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   +   ++G G QTR+F ++ + V G+  L
Sbjct:   87 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVAL 312          
BLAST of DY260182 vs. ExPASy Swiss-Prot
Match: UXS1_HUMAN (UDP-glucuronic acid decarboxylase 1 OS=Homo sapiens GN=UXS1 PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.409e-14
Identity = 66/239 (27.62%), Postives = 112/239 (46.86%), Query Frame = 3
Query:  105 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFPFLDECVEGVPTL 800
            ++ RI +TG  GF+ SH+  +L  +GH +   D  +   +   E    HE F L++  V++    +   VD +++LA+      ++  N    +  NT+ + NML  ++  G  R   AS++ +Y +       V  +  D W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   +   ++G G QTR+F ++ + V G+  L
Sbjct:   87 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEDYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EPLTVYGSGSQTRAFQYVSDLVNGLVAL 312          
BLAST of DY260182 vs. ExPASy Swiss-Prot
Match: UXS1_XENTR (UDP-glucuronic acid decarboxylase 1 OS=Xenopus tropicalis GN=uxs1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.140e-14
Identity = 65/239 (27.20%), Postives = 113/239 (47.28%), Query Frame = 3
Query:  105 EKLRISVTGAGGFIASHIARRLKSEGHYIIASD--WKKNEHMTEDMFCHE-FHLVDLRVMDNCLKVTKGVDHVFNLAADMGGMGFIQSNHSVIMYNNTMISFNMLEASRISGVKRFFYASSACIYPEFKQLETNVSLKESDAW----PAEPQDAYGLEKLASEELCKHYTKDFGIECRVGRFHNIYGPFGTWKGGREKAPAAFCRKALTSTDKFEMWGDGLQTRSFPFLDECVEGVPTL 800
            ++ RI +TG  GF+ SH+  +L  +GH +   D  +   +   E    HE F L++  V++    +   VD +++LA+      ++  N    +  NT+ + NML  ++  G  R   AS++ +Y +       V  +  + W    P  P+  Y   K  +E +C  Y K  G+E RV R  N +GP      GR    + F  +AL   ++  ++G G QTR+F ++ + V G+  L
Sbjct:   88 DRKRILITGGAGFVGSHLTDKLMMDGHEVTVVDNFFTGRKRNVEHWIGHENFELINHDVVE---PLYIEVDQIYHLASPASPPNYMY-NPIKTLKTNTIGTLNMLGLAKRVGA-RLLLASTSEVYGD-----PEVHPQSEEYWGHVNPIGPRACYDEGKRVAETMCYAYMKQEGVEVRVARIFNTFGPRMHMNDGR--VVSNFILQALQG-EQLTVYGSGEQTRAFQYVSDLVNGLVAL 313          
The following BLAST results are available for this feature:
BLAST of DY260182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
GME1_ORYSJ2.561e-14191.67GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME1_ORYSI1.271e-14091.29GDP-mannose 3,5-epimerase 1 OS=Oryza sativa subsp.... [more]
GME2_ORYSJ3.462e-13892.43GDP-mannose 3,5-epimerase 2 OS=Oryza sativa subsp.... [more]
GME_ARATH2.244e-13787.83GDP-mannose 3,5-epimerase OS=Arabidopsis thaliana ... [more]
YTCB_BACSU6.759e-1729.17Uncharacterized UDP-glucose epimerase ytcB OS=Baci... [more]
UXS1_RAT1.409e-1427.62UDP-glucuronic acid decarboxylase 1 OS=Rattus norv... [more]
UXS1_PONAB1.409e-1427.62UDP-glucuronic acid decarboxylase 1 OS=Pongo abeli... [more]
UXS1_MOUSE1.409e-1427.62UDP-glucuronic acid decarboxylase 1 OS=Mus musculu... [more]
UXS1_HUMAN1.409e-1427.62UDP-glucuronic acid decarboxylase 1 OS=Homo sapien... [more]
UXS1_XENTR3.140e-1427.20UDP-glucuronic acid decarboxylase 1 OS=Xenopus tro... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260182 ID=DY260182; Name=DY260182; organism=Citrus clementina; type=EST; length=1059bp
ATTTTACTCTCAAAGTTCAGGTGTTTTTCAGAATGGGAAGTTCTGAAGGA
ACCTATGGTGCATACACCTATGAGGAGCTTGAGAGGGAACCTTACTGGCC
TTCTGAGAAGCTCCGAATTTCTGTCACTGGGGCAGGTGGTTTTATTGCCT
CCCACATTGCTCGGCGTCTGAAGAGTGAAGGCCATTACATTATTGCCTCT
GACTGGAAGAAGAATGAGCACATGACTGAGGATATGTTCTGTCATGAATT
CCACCTTGTTGACCTTAGGGTCATGGACAATTGCTTGAAAGTTACTAAGG
GGGTTGACCATGTGTTTAACCTTGCTGCTGATATGGGTGGTATGGGCTTT
ATTCAGTCCAACCACTCTGTTATCATGTATAACAATACCATGATCAGCTT
CAACATGCTTGAGGCTTCTAGGATCAGTGGAGTAAAGAGGTTTTTCTATG
CCTCTAGTGCCTGCATCTATCCCGAATTTAAGCAGCTGGAAACTAACGTA
AGCTTGAAGGAGTCTGATGCCTGGCCCGCTGAGCCTCAAGATGCTTATGG
CTTGGAGAAGCTTGCAAGTGAGGAGTTGTGTAAGCACTACACGAAAGACT
TTGGAATTGAGTGTCGTGTTGGAAGATTCCACAATATTTATGGGCCTTTT
GGAACATGGAAAGGTGGAAGGGAAAAAGCTCCTGCTGCTTTTTGCCGAAA
GGCTCTTACCTCAACTGACAAGTTTGAGATGTGGGGAGATGGACTTCAAA
CCCGATCTTTCCCCTTCCTTGATGAATGTGTTGAAGGTGTGCCCACGTTA
GCAATTGCTGGTTTTGTTGCCAATCCGTCCCAACCCCCCATTTTTCTTGT
TGAGGGTTCTCCGGTGCCCCGCCGTAGGGGAATGGATTTGTTTGTAATGT
TTCCCCGGCCCGAAAAATTTCCCCCAGGCTTGGTGGAGTTTTTAAAAACC
CACCCCCATGGTCGAACCGGCTTGAGTTTGACCCCCGAATTTTTTGTTTG
AATGCCCCATTGGTGGCAAAAAACATTCCCCCAAAGGGGGTCTAAAAAAG
GGCCAGGGG
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