DY260184

Overview
NameDY260184
Unique NameDY260184
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1060
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260184_ssr369 microsatellite DY260184_ssr369:369..380. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260184 vs. ExPASy Swiss-Prot
Match: TSAP1_RAT (tRNA selenocysteine 1-associated protein 1 OS=Rattus norvegicus GN=Trnau1ap PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.502e-24
Identity = 60/131 (45.80%), Postives = 83/131 (63.36%), Query Frame = 3
Query:  411 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAHVTDSLLHETFASRYPSVKAAKVVLD 794
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+ S+FVGDL   V D +L+E F   YPS +  KVVLD
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD 131          
BLAST of DY260184 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 114.005 bits (284), Expect = 1.502e-24
Identity = 60/131 (45.80%), Postives = 83/131 (63.36%), Query Frame = 3
Query:  411 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAHVTDSLLHETFASRYPSVKAAKVVLD 794
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+ S+FVGDL   V D +L+E F   YPS +  KVVLD
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD 131          
BLAST of DY260184 vs. ExPASy Swiss-Prot
Match: TSAP1_HUMAN (tRNA selenocysteine 1-associated protein 1 OS=Homo sapiens GN=TRNAU1AP PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.502e-24
Identity = 60/131 (45.80%), Postives = 83/131 (63.36%), Query Frame = 3
Query:  411 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAHVTDSLLHETFASRYPSVKAAKVVLD 794
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+ S+FVGDL   V D +L+E F   YPS +  KVVLD
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD 131          
BLAST of DY260184 vs. ExPASy Swiss-Prot
Match: TSAP1_BOVIN (tRNA selenocysteine 1-associated protein 1 OS=Bos taurus GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 1.502e-24
Identity = 60/131 (45.80%), Postives = 83/131 (63.36%), Query Frame = 3
Query:  411 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAHVTDSLLHETFASRYPSVKAAKVVLD 794
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+AT+    K+ DN P+ S+FVGDL   V D +L+E F   YPS +  KVVLD
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD 131          
BLAST of DY260184 vs. ExPASy Swiss-Prot
Match: TSAP1_PONAB (tRNA selenocysteine 1-associated protein 1 OS=Pongo abelii GN=TRNAU1AP PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.371e-24
Identity = 59/131 (45.04%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  411 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTD--QPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAHVTDSLLHETFASRYPSVKAAKVVLD 794
            ++W+GDL  +MDEN++   FA+ GE + S+K+IRN+ TG+  GY FVEF   ATAEK L       +P     + F+LN+ T+    K+ DN P+ S+FVGDL   V D +L+E F   YPS +  KVVLD
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYVTYG---KQPDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD 131          
BLAST of DY260184 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.077e-22
Identity = 55/131 (41.98%), Postives = 84/131 (64.12%), Query Frame = 3
Query:  411 TIWVGDLHHWMDENYLHSCFASTGEIA-SIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQP--FRLNWATFSTGDKRSDNGPDLSIFVGDLAAHVTDSLLHETFASRYPSVKAAKVVLD 794
            ++W+GDL  +MDEN++   F++ GE A  +K+I ++ TG S GY FVE    A+ ++ +Q     L+P ++ P  F+LN+AT+    KR + GP+ S+FVGDL + V D  LH+ F  ++PS K AKVV D
Sbjct:    7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYG---KRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTD 134          
BLAST of DY260184 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 4.147e-22
Identity = 57/146 (39.04%), Postives = 82/146 (56.16%), Query Frame = 3
Query:  387 GSGGGENKTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSE--GYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKRSDN----GPDLSIFVGDLAAHVTDSLLHETFASRYPSVKAAKVVLDANTG 806
            G G   + T+W+GDL  WMD  ++   +AS  E  ++KV+R+K +       Y FV+F + A AE+ L  Y + ++P     F+LNWAT   G  + +N     P+ SIFVGDL     DS L  TF S YPS  +AK+++D  TG
Sbjct:   78 GVGSKMSDTLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWAT--GGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTG 221          

HSP 2 Score: 25.0238 bits (53), Expect = 4.147e-22
Identity = 12/41 (29.27%), Postives = 18/41 (43.90%), Query Frame = 1
Query:  781 KLSLMPIPVEPKVMVLVRFGNENEKSRATTENDGVYCSSRP 903
            K+ + P+    +    VRF +E E+  A     G  C  RP
Sbjct:  213 KIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRP 253          
BLAST of DY260184 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 2.155e-20
Identity = 52/144 (36.11%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  387 GSGGGEN----KTIWVGDLHHWMDENYLHSCFASTGEIASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWAT-FSTGDKRSDNGPDLSIFVGDLAAHVTDSLLHETFASRYPSVKAAKVVLDANT 803
            GS   EN     T+W+G+L  W+ E ++   + + G+   +K+IRN+ TG++ GY FVEF +   A   + S  +  +P T+  F+LNWA+     +K      + SIFVGDL+ +V +  ++  FASRY S K+AK++ D  T
Sbjct:   82 GSSRDENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSAM-SMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQT 224          

HSP 2 Score: 26.9498 bits (58), Expect = 2.155e-20
Identity = 14/42 (33.33%), Postives = 18/42 (42.86%), Query Frame = 1
Query:  829 VRFGNENEKSRATTENDGVYCSSRPQAYWCRHPQGNPLGLSP 954
            VRF +EN++  A  E  G  C  RP       P+      SP
Sbjct:  233 VRFTDENDQKSALAEMQGQICGDRPIRVGLATPKSKAHVFSP 274          
BLAST of DY260184 vs. ExPASy Swiss-Prot
Match: TSAP1_DANRE (tRNA selenocysteine 1-associated protein 1 OS=Danio rerio GN=trnau1ap PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 6.327e-15
Identity = 45/131 (34.35%), Postives = 70/131 (53.44%), Query Frame = 3
Query:  411 TIWVGDLHHWMDENYLHSCFASTGE-IASIKVIRNKQTGLSEGYGFVEFFTHATAEKVLQSYTSILMPNTDQPFRLNWATFSTGDKRSDNGPDLSIFVGDLAAHVTDSLLHETFASRYPSVKAAKVVLDAN 800
            ++W+G+L  +MDE+++   FA  GE +  I++IR+K TG + GYGFVE       E+ L+      +P    P R   +  + G  +       S+FV DL   V D +L+E F   + S  + K+VLDAN
Sbjct:    3 SLWMGNLEPYMDEDFICRAFAQMGETVVKIRLIRDKITGKNAGYGFVELADDTAVERCLRKVNGKPLPGATPPKRFKLSRSNYG--KQGESSTFSLFVSDLTPDVDDGMLYEFFHYHFSSCCSGKIVLDAN 131          
BLAST of DY260184 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 4.387e-12
Identity = 51/154 (33.12%), Postives = 79/154 (51.30%), Query Frame = 3
Query:  396 GGENKTIWVGDLHHWMDENYLHSCFASTGEI-ASIKVIRNKQTGL----------SEGYGFVEFFTHATAEKVLQSYTSILMPN-TDQPFRLNWATFSTGDKRSD-----NGPDLSIFVGDLAAHVTDSLLHETFASRYPSVKAAKVVLDANTG 806
            G     +++GDL    D+N +   +AS GE   +++++ N               ++GY FV+F +   A   L     +L+PN  ++  +LNWAT S  +  +      +G + SIFVGDLA +VT+S L E F +RY S   AK+V D  TG
Sbjct:   50 GTTGNQLYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPSSTHAANALLK-NGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTG 202          

HSP 2 Score: 23.0978 bits (48), Expect = 4.387e-12
Identity = 13/41 (31.71%), Postives = 21/41 (51.22%), Query Frame = 1
Query:  829 VRFGNENEKSRATTENDGVYCSSR-----PQAYWCRHPQGN 936
            V+F N +E+  A +E  GV+ + R     P +   +H  GN
Sbjct:  210 VKFTNSDEQQLALSEMQGVFLNGRAIKVGPTSGQQQHVSGN 250          
The following BLAST results are available for this feature:
BLAST of DY260184 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
TSAP1_RAT1.502e-2445.80tRNA selenocysteine 1-associated protein 1 OS=Ratt... [more]
TSAP1_MOUSE1.502e-2445.80tRNA selenocysteine 1-associated protein 1 OS=Mus ... [more]
TSAP1_HUMAN1.502e-2445.80tRNA selenocysteine 1-associated protein 1 OS=Homo... [more]
TSAP1_BOVIN1.502e-2445.80tRNA selenocysteine 1-associated protein 1 OS=Bos ... [more]
TSAP1_PONAB4.371e-2445.04tRNA selenocysteine 1-associated protein 1 OS=Pong... [more]
TSP1L_DANRE1.077e-2241.98tRNA selenocysteine 1-associated protein 1-like OS... [more]
CSX1_SCHPO4.147e-2239.04RNA-binding post-transcriptional regulator csx1 OS... [more]
YG41_SCHPO2.155e-2036.11Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
TSAP1_DANRE6.327e-1534.35tRNA selenocysteine 1-associated protein 1 OS=Dani... [more]
NAM8_YEAST4.387e-1233.12Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260184 ID=DY260184; Name=DY260184; organism=Citrus clementina; type=EST; length=1060bp
CTCTCAGATTCCCCTTTTTTCTCTCTCTTAACAACAACGCAGATTCATTA
ATTATATTTTGTTACATTTGTTTGTAACCCTATCCTTGAATCTTTCCATT
TTCATTTTATTTTTAATAAAGAAGAGGAAGATAAATGAATAAGATGCAAT
CAAGCGGCTCTGATTCATCGCAGGACCAGCAGAATCAACGGCAACAACAA
CAGCCGCCGCCTCCTCAGCAGCAACCTTGGATGGCGATGCAGTATCCAGC
GGCGGCGATGGTAATGCCTCACCAAATGATGCCACCTCAACATTACCCGA
TACCACCACCTCCCTATATGCCGTATCACCAATACCAGCATCACCACCAG
CCGCATCTACAGCACCAACAGCAGCAGCAGCATCAAGGATCTGGCGGTGG
TGAGAATAAGACTATCTGGGTCGGTGATTTGCATCATTGGATGGACGAGA
ACTACCTTCATAGCTGTTTTGCTTCCACTGGAGAGATTGCCTCCATTAAG
GTTATTCGCAATAAGCAGACAGGATTGTCAGAAGGTTATGGATTTGTGGA
ATTTTTTACCCATGCAACAGCTGAGAAAGTTCTGCAGAGCTATACTAGCA
TTCTGATGCCCAACACAGATCAGCCTTTCCGCCTGAACTGGGCAACATTT
AGTACGGGTGACAAGCGCTCAGATAATGGTCCTGATCTTTCTATTTTTGT
AGGAGATTTAGCTGCCCATGTTACTGATAGCTTATTGCATGAAACTTTTG
CTAGTAGATATCCTTCCGTTAAAGCAGCAAAAGTTGTCCTTGATGCCAAT
ACCGGTCGAACCAAAGGTAATGGTTTTGGTAAGGTTTGGAAATGAAAATG
AAAAGTCCCGGGCCACGACTGAAAATGATGGTGTCTATTGTTCAAGCAGG
CCCCAAGCCTATTGGTGCCGCCACCCCCAAGGAAATCCCCTCGGGTTATC
ACCACCCATAACTCCTTCTCCAGGGAGGGGATGCCCTCAAAATGGTGCCC
CCCCGGCCCAGGCCCCCCCAATTCCAAAAAGAAAAACCCCTTTCAAAACC
CAAAAAAAAA
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