DY260185

Overview
NameDY260185
Unique NameDY260185
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1035
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260185_ssr518 microsatellite DY260185_ssr518:518..529. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1446 contig Ccv1_Contig1446:1..1035. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260185 vs. ExPASy Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.040e-22
Identity = 51/68 (75.00%), Postives = 59/68 (86.76%), Query Frame = 2
Query:  194 SKTPSHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIQ 397
            +K  +HPPYFQMI EAL AL +K GSSPYA+AKYME+KHKDELPANFRKIL +QLK+ AAKG LIKI+
Sbjct:   44 AKAVTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIK 111          
BLAST of DY260185 vs. ExPASy Swiss-Prot
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 2.100e-15
Identity = 37/67 (55.22%), Postives = 51/67 (76.12%), Query Frame = 2
Query:  200 TPSHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIQG 400
            TP+HP Y +M++EA+ AL+++SGSS  AI K++E+KHK  LPANFRKIL  Q+K   A G L K++G
Sbjct:   52 TPAHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKG 118          
BLAST of DY260185 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 4.678e-15
Identity = 36/66 (54.55%), Postives = 54/66 (81.82%), Query Frame = 2
Query:  200 TPSHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIQ 397
            +P+H PY +M++EA+T+L++++GSS YAIAK++E+KHK +LP NFRK+L VQLK   A G L K++
Sbjct:   47 SPTHLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVK 112          
BLAST of DY260185 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 5.173e-14
Identity = 35/69 (50.72%), Postives = 53/69 (76.81%), Query Frame = 2
Query:  191 QSKTPSHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIQ 397
            +S TP+HPPYF+MI +A+  L++++GSS +AI K++EEK K  LP+NF+K+L  QLK F A   L+K++
Sbjct:   50 RSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQK-SLPSNFKKLLLTQLKKFVASEKLVKVK 117          
BLAST of DY260185 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.719e-13
Identity = 33/66 (50.00%), Postives = 52/66 (78.79%), Query Frame = 2
Query:  200 TPSHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIQ 397
            T SHP +F+MI++A++ L++++GSS YAI K++E+KHK +LP+NFRK+L   LK   A G L+K++
Sbjct:   48 TSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHLKKLVASGKLVKVK 112          
BLAST of DY260185 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.664e-12
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 2
Query:  206 SHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIQG 400
            SHP Y +MI +A+ +L++K+GSS YAIAK++EEK K +LPANF+K+L   LK   A G LIK++G
Sbjct:   61 SHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLKKNVASGKLIKVKG 124          
BLAST of DY260185 vs. ExPASy Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.099e-11
Identity = 33/66 (50.00%), Postives = 46/66 (69.70%), Query Frame = 2
Query:  200 TPSHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIQ 397
            T SHP Y +MI +A+  L++++GSS YAI K++EEKHK  LP  FRK+L V LK   A   L+K++
Sbjct:   59 TSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHK-SLPPTFRKLLLVNLKRLVASEKLVKVK 123          
BLAST of DY260185 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.991e-11
Identity = 32/64 (50.00%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  206 SHPPYFQMITEALTALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIQ 397
            SHP Y +MI +A+  L++++GSS YAI K++EEK K ELP  FRK+L + LK   A G L+K++
Sbjct:   61 SHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLKRLVASGKLVKVK 123          
The following BLAST results are available for this feature:
BLAST of DY260185 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
H1_SOLPN1.040e-2275.00Histone H1 OS=Solanum pennellii PE=2 SV=1[more]
H1_WHEAT2.100e-1555.22Histone H1 OS=Triticum aestivum PE=2 SV=2[more]
H1_MAIZE4.678e-1554.55Histone H1 OS=Zea mays PE=2 SV=2[more]
H1_SOLLC5.173e-1450.72Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
H1_EUPES5.719e-1350.00Histone H1 OS=Euphorbia esula PE=2 SV=1[more]
H1_PEA1.664e-1255.38Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H12_ARATH4.099e-1150.00Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 ... [more]
H11_ARATH6.991e-1150.00Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YJ20FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260185 ID=DY260185; Name=DY260185; organism=Citrus clementina; type=EST; length=1035bp
TTTTCTTCTACCCTTTCAGCGAGATCGTTTTGAGCCAATTCGTTAGTTGC
GAAAGTAGATGGCCACAGAAGGTGAAGCTGTGACGGATCTTCAGCCGGCT
GCGGAGGAGCCGGAAAAGGTCGTCACTGAGAAGAAGGCCAAGGCTGCTAA
GGAGAAGAAGCCCAAGGCTCCTAAAGAGAAGAAGCCAAAGCAGTCCAAAA
CCCCCTCTCATCCTCCTTATTTTCAGATGATAACGGAGGCACTGACGGCG
CTGCAAGATAAGAGCGGTTCAAGCCCATACGCAATAGCCAAGTACATGGA
AGAGAAGCACAAGGATGAGCTCCCAGCGAATTTCAGGAAAATATTGGCAG
TGCAGCTGAAGCACTTTGCCGCGAAAGGAAATCTCATCAAGATCCAGGGC
CTCTTACAAGCTCTCTGAAGCGGCAGCTGGCAAAACCAAAAAAGAGATCA
AGACCAAGGCCAAGGCCCCCAAGGAAAACAAGGTCCGTAACTGCTGCAGC
TAAAATCAAAGCAGAGTCCGCCGCCGCCGCTCCTCCTCCGCCCAAGAAGG
CAAAGAAATCCAGCTGCTGCCAAACCCAAGCAGCCCAAATCCCATCCAGT
CCCCCTGCCGCTAAGAAAGCCAAGAAAGCTGCCTGCCCAGCAGTAATATG
TATGATATAATAATAGTAAAGTACAATCTAGTTTTCACCTTTTCCTGTCT
GTTAAAAAGTATCATGTAACACGTCCACCTCCCGGTATGAATCGTGGTTT
GCATCAAATGAATGGAATGACCCTCCCCACTTTTTGTTTGGGTTTTAATG
GGAACCCTTTTCCGCCTTGTAAAGTGGGCCCCCCACTAAATCATGAAAGA
ATCCCCAAGGTCACACAATCGCGATCCCGACACCAGCCAAAAAAAATGCA
AAGAACAAAAAAAAAAAACAGACCCCCCCCTTTTTCTCCTCAACCAACTT
CGGCCCTAAATAAAACAATATGCGTCCTTACCTTTTTGTTCTCCCACGTC
AAGGATCCACCTCTCAACACAGAAAAAAAACTCAT
back to top