DY260186

Overview
NameDY260186
Unique NameDY260186
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length897
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1447 contig Ccv1_Contig1447:1..898. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: GLNB_NOSP7 (Nitrogen regulatory protein P-II OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) GN=glnB PE=3 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 4.951e-23
Identity = 56/96 (58.33%), Postives = 76/96 (79.17%), Query Frame = 3
Query:  417 KKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGERSEKA 704
            K AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+EIVV  +QV+ V+DKI+  ARTGEIGD +IF+ PV  VIR+RTGE++ +A
Sbjct:   17 KIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKVEIVVDDNQVDMVVDKIIAAARTGEIGDGKIFISPVEQVIRIRTGEKNTEA 111          
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: GLNB_FREDI (Nitrogen regulatory protein P-II OS=Fremyella diplosiphon GN=glnB PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.467e-23
Identity = 55/96 (57.29%), Postives = 76/96 (79.17%), Query Frame = 3
Query:  417 KKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGERSEKA 704
            K AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+EIVV  +QV+ V+DKI+  ARTGEIGD +IF+ PV  V+R+RTGE++ +A
Sbjct:   17 KIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKVEIVVEDNQVDMVVDKIIAAARTGEIGDGKIFISPVEQVVRIRTGEKNTEA 111          
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: GLNB_SYNY3 (Nitrogen regulatory protein P-II OS=Synechocystis sp. (strain PCC 6803) GN=glnB PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.446e-23
Identity = 54/96 (56.25%), Postives = 76/96 (79.17%), Query Frame = 3
Query:  417 KKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGERSEKA 704
            K AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+EIVV + QV+ V+DK++  ARTGEIGD +IF+ PV +V+R+RTGE+  +A
Sbjct:   17 KIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKIEIVVDEGQVDMVVDKLVSAARTGEIGDGKIFISPVDSVVRIRTGEKDTEA 111          
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: GLNB_SYNP6 (Nitrogen regulatory protein P-II OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=glnB PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.209e-22
Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 3
Query:  417 KKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGERSEKA 704
            K AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+EIVV   QV+ VIDKI+  ARTGEIGD +IF+ PV   IR+RTGE++  A
Sbjct:   17 KIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111          
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: GLNB_SYNE7 (Nitrogen regulatory protein P-II OS=Synechococcus elongatus (strain PCC 7942) GN=glnB PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 3.209e-22
Identity = 56/96 (58.33%), Postives = 73/96 (76.04%), Query Frame = 3
Query:  417 KKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGERSEKA 704
            K AL+N GI G+TVS+VRGFG Q G TER+ GSE++ + F+ K+K+EIVV   QV+ VIDKI+  ARTGEIGD +IF+ PV   IR+RTGE++  A
Sbjct:   17 KIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVE-FLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111          
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: GLNB_AQUAE (Nitrogen regulatory protein P-II OS=Aquifex aeolicus GN=glnB PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.761e-20
Identity = 49/96 (51.04%), Postives = 74/96 (77.08%), Query Frame = 3
Query:  417 KKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGERSEKA 704
            K AL+ +GI G+TV++V+GFG Q G TE + G+E+  D F+ KVK+E+VV  + VE V++ I++ A+TG +GD +IF++PV +VIR+RTGER E+A
Sbjct:   17 KDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVID-FLPKVKIEVVVRDEDVEKVVETIVKTAQTGRVGDGKIFIIPVEDVIRIRTGERGEQA 111          
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: GLNB_PASMU (Nitrogen regulatory protein P-II OS=Pasteurella multocida GN=glnB PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 5.124e-20
Identity = 51/96 (53.12%), Postives = 73/96 (76.04%), Query Frame = 3
Query:  417 KKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGERSEKA 704
            +++L ++GI G+TV++VRGFG Q G TE + G+E+  D F+ KVKMEIVV+ +QV+  I+ IME A+TG+IGD +IF+  V  VIR+RTGE +E A
Sbjct:   17 RESLSDVGITGMTVTEVRGFGRQKGHTELYRGAEYMVD-FLPKVKMEIVVTDEQVDQCIEAIMETAQTGKIGDGKIFVYDVERVIRIRTGEENEDA 111          
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: Y059_METJA (Uncharacterized nitrogen regulatory PII-like protein MJ0059 OS=Methanocaldococcus jannaschii GN=MJ0059 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.262e-18
Identity = 49/98 (50.00%), Postives = 68/98 (69.39%), Query Frame = 3
Query:  411 LTKKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGERSEKA 704
            + KKAL + G  G+TVS+V+G G QGG  ER+ G E+  D  + KVK+E+VV ++ V+ VID I E ARTG  GD +IF++PV  V+RVRT E  ++A
Sbjct:   15 IVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVD-LIPKVKIELVVKEEDVDNVIDIICENARTGNPGDGKIFVIPVERVVRVRTKEEGKEA 111          
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: Y1344_METJA (Uncharacterized nitrogen regulatory PII-like protein MJ1344 OS=Methanocaldococcus jannaschii GN=MJ1344 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.263e-18
Identity = 48/93 (51.61%), Postives = 65/93 (69.89%), Query Frame = 3
Query:  411 LTKKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGE 689
            + KKAL + G  G+TVS+V+G G QGG  ER+ G E+  D  + KVK+E+VV ++ V+ VID I E ARTG  GD +IF++PV  V+RVRT E
Sbjct:   15 IVKKALSDAGYVGMTVSEVKGRGVQGGIVERYRGREYIVD-LIPKVKIELVVKEEDVDNVIDIICENARTGNPGDGKIFVIPVERVVRVRTKE 106          
BLAST of DY260186 vs. ExPASy Swiss-Prot
Match: GLNB_MYCTU (Nitrogen regulatory protein P-II OS=Mycobacterium tuberculosis GN=glnB PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 6.263e-18
Identity = 45/96 (46.88%), Postives = 69/96 (71.88%), Query Frame = 3
Query:  417 KKALLNMGIRGVTVSDVRGFGAQGGSTERHGGSEFSEDKFVAKVKMEIVVSKDQVEGVIDKIMEEARTGEIGDRQIFLVPVPNVIRVRTGERSEKA 704
            K +L + G+ G+TVS+++G+G Q G TE + G+E+S D FV KV++E+VV    V+ V+D I+  ARTG+IGD ++++ PV  ++RVRTGER   A
Sbjct:   17 KTSLEDAGVLGMTVSEIQGYGRQKGHTEVYRGAEYSVD-FVPKVRIEVVVDDSIVDKVVDSIVRAARTGKIGDGKVWVSPVDTIVRVRTGERGHDA 111          
The following BLAST results are available for this feature:
BLAST of DY260186 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
GLNB_NOSP74.951e-2358.33Nitrogen regulatory protein P-II OS=Nostoc punctif... [more]
GLNB_FREDI6.467e-2357.29Nitrogen regulatory protein P-II OS=Fremyella dipl... [more]
GLNB_SYNY38.446e-2356.25Nitrogen regulatory protein P-II OS=Synechocystis ... [more]
GLNB_SYNP63.209e-2258.33Nitrogen regulatory protein P-II OS=Synechococcus ... [more]
GLNB_SYNE73.209e-2258.33Nitrogen regulatory protein P-II OS=Synechococcus ... [more]
GLNB_AQUAE1.761e-2051.04Nitrogen regulatory protein P-II OS=Aquifex aeolic... [more]
GLNB_PASMU5.124e-2053.13Nitrogen regulatory protein P-II OS=Pasteurella mu... [more]
Y059_METJA1.262e-1850.00Uncharacterized nitrogen regulatory PII-like prote... [more]
Y1344_METJA6.263e-1851.61Uncharacterized nitrogen regulatory PII-like prote... [more]
GLNB_MYCTU6.263e-1846.88Nitrogen regulatory protein P-II OS=Mycobacterium ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YJ22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260186 ID=DY260186; Name=DY260186; organism=Citrus clementina; type=EST; length=897bp
TTAGTTGCCCGTCTCTTCCAAAAGAGTTTGACATTGTTCTTTTTCATTCC
AACATTTTTGCTGCTATTTATGAGCGATAGAAGGAACCCATATCATGATA
TCCTTATTTCATTAACCAATCGGGCTGGAGATGTAATTTTTTTCCAACAA
AAATTGGAGAGGTCTTGGATTTTCCTACTGTTGATGAGCACCTGACTGTA
TAACTTTCTGTTGATAGATGAAGAATTTTAAGTTGCATCTATTTAAGGAT
CGAGTTTCAGTAGGAAGGACATGCTTCCATCCAAAGAAATTAATTATTTT
AGCCCCATAAATTGAGTAAATATGTGTCCCTAAATCATTCGAAACCCTTC
AGATTATCATTTCTACCAAACATTTTATTCACATTATATTGGCACTATTT
TTGGTTTCTTTTGACAAAAAAGGCTTTGCTGAATATGGGTATCCGTGGTG
TCACGGTTTCTGATGTTCGAGGTTTTGGTGCTCAAGGTGGCTCAACAGAA
AGGCATGGTGGCTCTGAATTTTCTGAGGATAAATTTGTTGCTAAAGTGAA
GATGGAGATTGTGGTGAGCAAAGACCAGGTGGAAGGAGTAATTGATAAAA
TTATGGAGGAGGCCAGGACTGGAGAAATTGGTGACCGCCAGATTTTTTTG
GTACCTGTCCCAAATGTCATAAGAGTTCGAACTGGTGAACGAAGTGAAAA
AGCTGAAAGGAAGGCACGAGGATGGTCCGACCTATCCTCCGCCGTGTGAC
CCTGTACCGATTTGTCGTATGATTTGAAAACCAGATTAACATCCAAACCC
CCTTAGGTTTTAAAAGTTTTAGTCGCCATTATCCCCGTCCCCCCGGCGCC
TGATAAAAAAACAAGAATAAAAAACCTGGCTTCGGCCCCCCCCCCCA
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