DY260188

Overview
NameDY260188
Unique NameDY260188
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1023
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_SOYBN (60S acidic ribosomal protein P0 OS=Glycine max PE=2 SV=1)

HSP 1 Score: 264.618 bits (675), Expect = 6.559e-70
Identity = 135/173 (78.03%), Postives = 146/173 (84.39%), Query Frame = 1
Query:  169 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS 687
            M  K +KAEKKIAYDAKLC L+EEY QILV  +DNVGS+QLQNIR+GLRGDSVVLMGKNTMMKR++RMHAEKTGN A+LNLIPLL GNVGLIFTKGDL            GAPARVGLVAPIDVVVPP +TGLDPSQT F QVLNIPTKIN+GTVEI TP +LIRKGDK GSS
Sbjct:    1 MAPKQTKAEKKIAYDAKLCDLMEEYGQILVVNSDNVGSNQLQNIRKGLRGDSVVLMGKNTMMKRSVRMHAEKTGNNAYLNLIPLLVGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSS 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA01_ARATH (60S acidic ribosomal protein P0-1 OS=Arabidopsis thaliana GN=RPP0A PE=2 SV=1)

HSP 1 Score: 264.233 bits (674), Expect = 8.566e-70
Identity = 134/173 (77.46%), Postives = 148/173 (85.55%), Query Frame = 1
Query:  169 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS 687
            M VKA+KAEKKI YD+KLCQLL EY+QILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+HA+KTGN AFL+L+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV P +TGLDPSQT F QVLNIPTKIN+GTVEI TP +LI+KGDK GSS
Sbjct:    1 MAVKATKAEKKIVYDSKLCQLLNEYSQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHADKTGNQAFLSLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSS 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA02_ARATH (60S acidic ribosomal protein P0-2 OS=Arabidopsis thaliana GN=RPP0B PE=1 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 1.119e-69
Identity = 133/172 (77.33%), Postives = 148/172 (86.05%), Query Frame = 1
Query:  172 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS 687
            +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+H+E TGNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV P +TGLDPSQT F QVLNIPTKIN+GTVEI TP +LI++GDK GSS
Sbjct:    1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENTGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSS 172          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA03_ARATH (60S acidic ribosomal protein P0-3 OS=Arabidopsis thaliana GN=RPP0C PE=1 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 3.255e-69
Identity = 132/172 (76.74%), Postives = 148/172 (86.05%), Query Frame = 1
Query:  172 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS 687
            +VKA+KAEKKIAYD KLCQL++EYTQILV AADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+H+E +GNTA LNL+PLLQGNVGLIFTKGDL            GAPARVGLVAPIDVVV P +TGLDPSQT F QVLNIPTKIN+GTVEI TP +LI++GDK GSS
Sbjct:    1 MVKATKAEKKIAYDTKLCQLIDEYTQILVVAADNVGSTQLQNIRKGLRGDSVVLMGKNTMMKRSVRIHSENSGNTAILNLLPLLQGNVGLIFTKGDLKEVSEEVAKYKVGAPARVGLVAPIDVVVQPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKQGDKVGSS 172          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_LUPLU (60S acidic ribosomal protein P0 OS=Lupinus luteus PE=2 SV=1)

HSP 1 Score: 258.84 bits (660), Expect = 3.599e-68
Identity = 134/173 (77.46%), Postives = 144/173 (83.24%), Query Frame = 1
Query:  169 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS 687
            M  KA+KAEKKI YD KLCQLL+EYTQILV  ADNVGS QLQNIR+GLRGDSVVLMGKNTMMKR++R+HAEKTGN AFLNLIPLL GNVGLIFTKG L            GAPA VGLVAPIDVVVPP +TGLDPSQT F QVLNIPTKIN+GTVEI TP +LI+KGDK GSS
Sbjct:    1 MAPKATKAEKKIVYDGKLCQLLDEYTQILVVNADNVGSKQLQNIRQGLRGDSVVLMGKNTMMKRSVRIHAEKTGNQAFLNLIPLLIGNVGLIFTKGYLKEVSEEVAKYKVGAPACVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSS 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_ORYSJ (60S acidic ribosomal protein P0 OS=Oryza sativa subsp. japonica GN=Os08g0130500 PE=1 SV=3)

HSP 1 Score: 250.751 bits (639), Expect = 9.801e-66
Identity = 122/173 (70.52%), Postives = 144/173 (83.24%), Query Frame = 1
Query:  169 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS 687
            M +K +KAEKK+AYD KLCQLL+EYT++L+A ADNVGS+QLQ IR+GLRGDS+VLMGKNT+++R I++HA+ TGN  FL L+PLL GNVGLIFTKGDL            GAPARVGLVAP+DVVVPP +TGLDPSQT F QVLNIPTKIN+GTVEI TP +LI+KGDK GSS
Sbjct:    1 MAIKRTKAEKKVAYDKKLCQLLDEYTKVLIAVADNVGSNQLQEIRKGLRGDSIVLMGKNTLIRRCIKVHADNTGNKEFLELMPLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSS 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_MAIZE (60S acidic ribosomal protein P0 OS=Zea mays GN=RP-P0 PE=1 SV=3)

HSP 1 Score: 242.276 bits (617), Expect = 3.486e-63
Identity = 122/173 (70.52%), Postives = 142/173 (82.08%), Query Frame = 1
Query:  169 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS 687
            M +K +KAEKKIAYD KLC LL+EYT++L+A ADNVGS QLQ+IRRGLRGDSVVLMGKNT+++R I+++AEKTGN  F  L+ LL GNVGLIFTKGDL            GAPARVGLVAP+DVVVPP +TGLDPSQT F QVLNIPTKIN+GTVEI TP +LI+KG+K GSS
Sbjct:    1 MAIKRTKAEKKIAYDKKLCSLLDEYTKVLIALADNVGSKQLQDIRRGLRGDSVVLMGKNTLIRRCIKVYAEKTGNHTFDPLMDLLVGNVGLIFTKGDLKEVREEVAKYKVGAPARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGEKVGSS 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_CHERU (60S acidic ribosomal protein P0 OS=Chenopodium rubrum PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.121e-61
Identity = 122/173 (70.52%), Postives = 138/173 (79.77%), Query Frame = 1
Query:  169 MVVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS 687
            M VK +KAEKKIAYD KLCQLL+EY+Q+L+A+ADNVGS+QLQ IR GLRGDS+VLMGKNTMMKR+IR+HAE TGN    N+  L   NVGLIFTKGDL            GAPAR GLVAPIDVVVPP +TGLDPSQT F QVLNIPTKIN+GTVEI T  +LI+KG+K GSS
Sbjct:    1 MAVKPTKAEKKIAYDQKLCQLLDEYSQVLIASADNVGSNQLQAIRIGLRGDSIVLMGKNTMMKRSIRLHAENTGNENLRNVEQLFLPNVGLIFTKGDLNQVREEISKYKVGAPARFGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITAVELIKKGEKVGSS 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_CERCA (60S acidic ribosomal protein P0 OS=Ceratitis capitata GN=RpLP0 PE=3 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 5.987e-39
Identity = 82/175 (46.86%), Postives = 112/175 (64.00%), Query Frame = 1
Query:  172 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            +V+ +KA  K  Y  K+ +L +EY +  +  ADNVGS Q+QNIR  LRG  VVLMGKNTMM++ IR H E   N     L+P ++GNVG +FTKGDL             APAR G +AP+ V++P ++TGL P +T F Q L+IPTKI++GT+EI     +++ GDK G+S  T
Sbjct:    1 MVRENKAAWKAQYFLKVVELFDEYPKCFIVGADNVGSKQMQNIRTSLRGLGVVLMGKNTMMRKAIRGHLEN--NAQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARAGAIAPLPVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEAT 173          
BLAST of DY260188 vs. ExPASy Swiss-Prot
Match: RLA0_DROME (60S acidic ribosomal protein P0 OS=Drosophila melanogaster GN=RpLP0 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 2.972e-38
Identity = 81/175 (46.29%), Postives = 113/175 (64.57%), Query Frame = 1
Query:  172 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSHQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPRHTGLDPSQTPFLQVLNIPTKINQGTVEITTPADLIRKGDKAGSS*GT 696
            +V+ +KA  K  Y  K+ +L +E+ +  +  ADNVGS Q+QNIR  LRG +VVLMGKNTMM++ IR H E   N     L+P ++GNVG +FTKGDL             APAR G +AP+ V++P ++TGL P +T F Q L+IPTKI++GT+EI     +++ GDK G+S  T
Sbjct:    1 MVRENKAAWKAQYFIKVVELFDEFPKCFIVGADNVGSKQMQNIRTSLRGLAVVLMGKNTMMRKAIRGHLEN--NPQLEKLLPHIKGNVGFVFTKGDLAEVRDKLLESKVRAPARPGAIAPLHVIIPAQNTGLGPEKTSFFQALSIPTKISKGTIEIINDVPILKPGDKVGASEAT 173          
The following BLAST results are available for this feature:
BLAST of DY260188 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
RLA0_SOYBN6.559e-7078.0360S acidic ribosomal protein P0 OS=Glycine max PE=... [more]
RLA01_ARATH8.566e-7077.4660S acidic ribosomal protein P0-1 OS=Arabidopsis t... [more]
RLA02_ARATH1.119e-6977.3360S acidic ribosomal protein P0-2 OS=Arabidopsis t... [more]
RLA03_ARATH3.255e-6976.7460S acidic ribosomal protein P0-3 OS=Arabidopsis t... [more]
RLA0_LUPLU3.599e-6877.4660S acidic ribosomal protein P0 OS=Lupinus luteus ... [more]
RLA0_ORYSJ9.801e-6670.5260S acidic ribosomal protein P0 OS=Oryza sativa su... [more]
RLA0_MAIZE3.486e-6370.5260S acidic ribosomal protein P0 OS=Zea mays GN=RP-... [more]
RLA0_CHERU1.121e-6170.5260S acidic ribosomal protein P0 OS=Chenopodium rub... [more]
RLA0_CERCA5.987e-3946.8660S acidic ribosomal protein P0 OS=Ceratitis capit... [more]
RLA0_DROME2.972e-3846.2960S acidic ribosomal protein P0 OS=Drosophila mela... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YJ24FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260188 ID=DY260188; Name=DY260188; organism=Citrus clementina; type=EST; length=1023bp
GGGTTTTTTCCCTTTCACTTCCTTCCCTCCCCTTGTATCTCGTTGAGGTT
AAAGAGACGGCAATTCCGCTGCTGTCCGCCTTGGCCCCCCGCTGCTTCGT
CTTGGCCCTCGATTTTGTATAAATTTACAACTTTTTACCCCCAACAAAAG
TAGAACCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGAGAAGAA
GATCGCGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACACCCAAA
TATTGGTGGCGGCCGCCGACAACGTGGGGTCCCATCAACTCCAGAACATT
CGTAGGGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTAT
GATGAAGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCT
TTCTCAATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACA
AAGGGTGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGG
AGCTCCTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTC
CCCGGCACACAGGTCTCGACCCCTCCCAGACCCCCTTCCTCCAGGTGCTT
AACATTCCCACCAAGATTAACCAGGGTACCGTTGAAATTACCACACCCGC
GGACCTTATTAGGAAGGGTGACAAGGCGGGATCTTCCTAAGGCACCCCCG
CTTGCAAAGCTTGGGACTCGCACCCTCCCCCAAGGGCCCGGTTGTCCACC
TCGCCCAGAAAAACGGCTCCCCCCCCCCACCCAACAGCCCTCGAACCTGC
CCAACAAGCACAATTACAACAAACTGCCCCCCCGCTTCACCCTGTCTACC
GCCCTACGACACTGCCCCCCCCCCACCCCACCCCGGCCTCCCCCCCCACA
CCGCTCCCCTCATTCCCCCCCCCACACGCGCTGCGCCTGGCCACGACCCC
CGCAGTCTCCACTCTCCTCACAATCGCTATAATTACAGAATAGACCCCCT
CCTCTCATCCTCCCCTTCTCCCA
back to top