DY260191

Overview
NameDY260191
Unique NameDY260191
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length998
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260191_ssr136 microsatellite DY260191_ssr136:136..147. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260191 vs. ExPASy Swiss-Prot
Match: TSSP_MOUSE (Thymus-specific serine protease OS=Mus musculus GN=Prss16 PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.470e-15
Identity = 50/114 (43.86%), Postives = 63/114 (55.26%), Query Frame = 2
Query:  293 QLWFNQTLDHFSPYDHRWFEQRYYELLDHFRSPDGPIFLRICGEYTCD--GIPNDYLAVLAKKFGAAVVSLEHRYYGKSSPFESLSTDNLKYLSSKQALFDLAIFPTALSGIFN 628
            Q W  Q LD F+  D R F QRY+    H    D P+FL I GE +     +   + A LA  +GA V+SLEHR+YG S P   L    L+YLSS+ AL D+A    ALSG+ N
Sbjct:   58 QGWLEQPLDPFNASDRRTFLQRYWVNDQHRTGQDVPVFLHIGGEGSLGPGSVMAGHPAALAPAWGALVISLEHRFYGLSMPAGGLDLALLRYLSSRHALADVASARQALSGLLN 171          
BLAST of DY260191 vs. ExPASy Swiss-Prot
Match: TSSP_HUMAN (Thymus-specific serine protease OS=Homo sapiens GN=PRSS16 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.838e-15
Identity = 48/112 (42.86%), Postives = 63/112 (56.25%), Query Frame = 2
Query:  299 WFNQTLDHFSPYDHRWFEQRYYELLDHFRSPDGPIFLRICGEYTCD--GIPNDYLAVLAKKFGAAVVSLEHRYYGKSSPFESLSTDNLKYLSSKQALFDLAIFPTALSGIFN 628
            W  Q LD F+  D R F QRY+    H+   DGPIFL + GE +     +   + A LA  +GA V+SLEHR+YG S P   L    L++LSS+ AL D+     ALS +FN
Sbjct:   61 WLEQLLDPFNVSDRRSFLQRYWVNDQHWVGQDGPIFLHLGGEGSLGPGSVMRGHPAALAPAWGALVISLEHRFYGLSIPAGGLEMAQLRFLSSRLALADVVSARLALSRLFN 172          
BLAST of DY260191 vs. ExPASy Swiss-Prot
Match: YM67_CAEEL (Putative serine protease K12H4.7 OS=Caenorhabditis elegans GN=K12H4.7 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.101e-13
Identity = 49/134 (36.57%), Postives = 72/134 (53.73%), Query Frame = 2
Query:  236 PPVTMLNKLSGSTNYLTTNQLWFNQTLDHFSPYDHRWFEQRYYELLDHFRSPDGPIFLRICGEYTCDGI----PNDYLAVLAKKFGAAVVSLEHRYYGKSSPFESLSTDNLKYLSSKQALFDLAIFPTALSGIF 625
            PP++ ++ +    N +++    F QTLDHF     + F+QRYY     +++  GP FL + GE          P   +  LA K GA V  +EHR+YG++ P   +S  NLKYLSS QA+ D A F  A++  F
Sbjct:   44 PPMSSVSHMINFDNVVSST---FTQTLDHFDSSVGKTFQQRYYHNNQWYKA-GGPAFLMLGGEGPESSYWVSYPGLEITNLAAKQGAWVFDIEHRFYGETHPTSDMSVPNLKYLSSAQAIEDAAAFIKAMTAKF 173          
BLAST of DY260191 vs. ExPASy Swiss-Prot
Match: YM9I_CAEEL (Putative serine protease F56F10.1 OS=Caenorhabditis elegans GN=F56F10.1 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.590e-12
Identity = 44/104 (42.31%), Postives = 60/104 (57.69%), Query Frame = 2
Query:  302 FNQTLDHFSPYDHRWFEQRYYELLDHFRSPDGPIFLRICGEYTCDGI----PNDYLAVLAKKFGAAVVSLEHRYYGKSSPFESLSTDNLKYLSSKQALFDLAIF 601
            F Q LDHF PY+ + + Q+Y+     F   +  IFL I GE   +G     PN      AK+FGA V  LEHR++G S P   + T +L+YL+++QAL DLA F
Sbjct:   59 FTQKLDHFDPYNTKTWNQKYF-YNPVFSRNNSIIFLMIGGEGPENGKWAANPNVQYLQWAKEFGADVFDLEHRFFGDSWPIPDMQTSSLRYLTTQQALADLAFF 161          
The following BLAST results are available for this feature:
BLAST of DY260191 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
TSSP_MOUSE4.470e-1543.86Thymus-specific serine protease OS=Mus musculus GN... [more]
TSSP_HUMAN5.838e-1542.86Thymus-specific serine protease OS=Homo sapiens GN... [more]
YM67_CAEEL1.101e-1336.57Putative serine protease K12H4.7 OS=Caenorhabditis... [more]
YM9I_CAEEL1.590e-1242.31Putative serine protease F56F10.1 OS=Caenorhabditi... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YK05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260191 ID=DY260191; Name=DY260191; organism=Citrus clementina; type=EST; length=998bp
GTACATTCCGCTAATTAATTGGAAGCGATGGCTATGGAACGGAACTAGCT
TCCATCTACAGGAGTAAGTGGGAAACTGGAAACTGGATACAAAACGAACA
CAGACACATCTCGTTCATTCTGCGGTGAGACCAAAAAATAAATAAATGGA
AGCTCTGTCGGTGAAGCCGCCGTCTTGGTCGACGGTCATGTTATTCGTCT
TATCGATGTTATTGAGCATCTCCAATGGGCTAATGCCACCTGTCACGATG
CTTAACAAATTGTCTGGCAGCACCAATTACTTGACCACCAATCAACTCTG
GTTCAATCAGACTCTCGATCATTTCTCACCTTATGATCACCGTTGGTTTG
AGCAGCGATATTATGAATTACTTGACCACTTTCGATCTCCGGATGGACCT
ATTTTTTTGAGGATTTGTGGTGAATATACTTGCGATGGCATACCAAATGA
TTATCTTGCTGTTCTCGCAAAGAAGTTTGGAGCGGCTGTGGTTTCACTTG
AACATCGTTACTATGGGAAGAGCTCACCATTTGAATCATTATCGACAGAC
AATTTGAAATATCTTTCCTCCAAGCAGGCACTCTTTGACTTGGCCATTTT
CCCGACAGCGTTATCAGGAATCTTTAACCCTGAAGCCCAAAAGAGGAGAT
GCTGACAATACGTGGTTTGTTTTTGGTATTTCATATCCTGGACCCCTTAA
TGCCTGGTTTCCGCCCCCCTTTCCCTCTCCCCCGGGTGGAATCCTTGCCA
CTTCCTGCCCCCTTCCGGCCATTTCCAACTTCCCTGGATTTGATCAGCCC
AATTGTGTCCCCGCCGGCCCCGGATGGCAACCCGCCCCCCCAGAAACCTC
CCCACCTTGCCGAACCGAGGCCCGCCACCAAATGCCAAAGCCGTGAACAA
CCTTGTCCAATGCCCCTGAACCTGGAAAAAAAGGGGGTTTCTCCCGATTT
TTCCGGCCAAAGCACCCCCTTACCCGCTTTCAAAACGAACACTCCCAA
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