DY260198
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: PSMD1_DROME (26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila melanogaster GN=Rpn2 PE=1 SV=1) HSP 1 Score: 181.8 bits (460), Expect = 5.767e-45 Identity = 105/273 (38.46%), Postives = 159/273 (58.24%), Query Frame = 2 Query: 2 CITDV*YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHL----PVPKTQPLQTVQPGSNDPPSAQNDSSTAE-DVQMNEGTPASNV---NVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796 C+ D ++QA+GIA+E RR+D ++AI +SD+V G L+Y NV+ S + + L PDY+++CQCL+FL++P V +L+ L RS + + L+A+QIAFDL E+ Q FL NV HL P+P P G+ A+++ ++ D + E TPA + + + E ++ + + K+ ILSGE SI L LQFL N +DL +L+ K++V R S+CH+AT+ ANA M +GTT D F R+NLD L R+ Sbjct: 141 CLDDNQFRQALGIALETRRMDTFKDAIMKSDDVRGMLAYAYNVTMSLIQNRGFRNEVLRCLVSLYRDLGVPDYVNMCQCLIFLEDPFAVAEMLDNLTRSSVETNNLMAYQIAFDLYESATQEFLGNVLQHLKNTAPIPTALPSTFKPQGTTSEDGAKSEGDKSKSDEDITEETPADDKVERTIDSLNEVEKLHQKNIEKLISILSGEVSIDLQLQFLIRSNHADLQVLRGTKEAV--RVSICHTATVIANAFMHSGTTSDQFLRDNLDWLARA 411
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: PSMD1_MOUSE (26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus GN=Psmd1 PE=1 SV=1) HSP 1 Score: 174.096 bits (440), Expect = 1.202e-42 Identity = 108/268 (40.30%), Postives = 156/268 (58.21%), Query Frame = 2 Query: 2 CITDV*YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796 C+ D Y+QA+GIA+E RRLD E+ I S++V G L+Y + + S + L PD++++CQCL+FLD+P+ V ILEKL++ +D+ L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + P ++ DS E + A +PK+ + L IK ILSGE +I+L LQFL +N +DL+ILK K +V RNSVCH+AT+ AN+ M GTT D F R+NL+ L R+ Sbjct: 141 CLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDPMETEEKTASAVAGKTPDASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARA 396
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: PSMD1_RAT (26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus GN=Psmd1 PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 2.051e-42 Identity = 108/268 (40.30%), Postives = 155/268 (57.84%), Query Frame = 2 Query: 2 CITDV*YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796 C+ D Y+QA+GIA+E RRLD E+ I S++V G L+Y + + S + L PD++++CQCL+FLD+ + V ILEKL++ +N L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + P + DS + E + G A +PK+ + L IK ILSGE +I+L LQFL +N +DL+ILK K +V RNSVCH+AT+ AN+ M GTT D F R+NL+ L R+ Sbjct: 141 CLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDTQAVSDILEKLVKEDN---LLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGPEKDSDSMETEEKTAGAVAGKTPDASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARA 396
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: PSMD1_HUMAN (26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1 PE=1 SV=2) HSP 1 Score: 173.326 bits (438), Expect = 2.051e-42 Identity = 107/268 (39.93%), Postives = 156/268 (58.21%), Query Frame = 2 Query: 2 CITDV*YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796 C+ D Y+QA+GIA+E RRLD E+ I S++V G L+Y + + S + L PD++++CQCL+FLD+P+ V ILEKL++ +D+ L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + P ++ DS + E + +PK+ + L IK ILSGE +I+L LQFL +N +DL+ILK K +V RNSVCH+AT+ AN+ M GTT D F R+NL+ L R+ Sbjct: 141 CLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDSMETEEKTSSAFVGKTPEASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARA 396
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: PSMD1_PONAB (26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii GN=PSMD1 PE=2 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 2.679e-42 Identity = 107/268 (39.93%), Postives = 159/268 (59.33%), Query Frame = 2 Query: 2 CITDV*YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDE---DPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796 C+ D Y+QA+GIA+E RRLD E+ I S++V G L+Y + + S + L PD++++CQCL+FLD+P+ V ILEKL++ +D+ L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + + ++ ++ E T ++ V E +PK+ + L IK ILSGE +I+L LQFL +N +DL+ILK K +V RNSVCH+AT+ AN+ M GTT D F R+NL+ L R+ Sbjct: 141 CLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDSMETEEKTGSAFVGKTPEASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARA 396
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: PSMD1_CHICK (26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus GN=PSMD1 PE=2 SV=1) HSP 1 Score: 172.94 bits (437), Expect = 2.679e-42 Identity = 106/268 (39.55%), Postives = 158/268 (58.96%), Query Frame = 2 Query: 2 CITDV*YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796 C+ D Y+QA+GIA+E RRLD E+ I S++V G L+Y + + S + L PD++++CQCL+FLD+P+ V ILEKL++ +D+ L+A+QI FDL E+ Q FL +V +L T P+ +V PGS + P ++ DS E + T + +PK ++++K+ ILSGE +I+L LQFL +N +DL+ILK K +V RNSVCH+AT+ AN+ M GTT D F R+NL+ L R+ Sbjct: 141 CLDDHKYKQAIGIALETRRLDIFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDAMEAEEKPGSTCVGKSAEINPEPK-----DQISKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARA 396
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: PSMD1_DICDI (26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium discoideum GN=psmD1 PE=1 SV=1) HSP 1 Score: 157.532 bits (397), Expect = 1.165e-37 Identity = 99/267 (37.08%), Postives = 152/267 (56.93%), Query Frame = 2 Query: 2 CITDV*YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHL-PVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEM-RNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796 C + Y+QA+GIAIE RRLD +E+AI++S NV+ LSYC+++ + VN PDYLS+ QCL+FLD V +IL L++ ++++ LLA+QI FDL +N Q FLLNVR+ L PV K T ++D DS NE + S+ + +RL ++ IL G+ SI + L+FLY + +D+ IL+++K + E+ + ++ +S T++ANA+M AGTT D F R N++ L +S Sbjct: 139 CFKEGSYKQALGIAIEARRLDIIEKAISQSGNVNSMLSYCLHICNVSVNNRHFRHSVLGILVNLHLAQEKPDYLSVVQCLIFLDNHIEVATILLSLIK-KDEESLLLAYQIGFDLFQNSTQQFLLNVRNRLPPVEKKSTTTTTTTPASDSMEIDIDSG-------NEKSGGSS-----------SFEQRLERLHSILIGDVSIGMNLEFLYRNCSTDMHILQSMKTTSELHKGAIFYSGTLFANALMHAGTTRDTFLRSNIEWLYKS 386
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: RPN2_SCHPO (26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe GN=rpn2 PE=1 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 9.571e-24 Identity = 83/260 (31.92%), Postives = 127/260 (48.85%), Query Frame = 2 Query: 20 YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALL-AFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796 ++ +GIAIE RLD +E I +D Y + ++ + V PDY S+ +C++ L++ +L KL S+N D +LL A+Q+AFDL ++ Q FL +V D LP P +++ ED +N + + ED Y R ILSGE +++ +FLY+HN +D+LIL K S+E RNSV H+A +ANA M GT+ D F R+NL L+++ Sbjct: 155 WRHVLGIAIEAHRLDIIEY-ILNADKETDLKPYVLELAMTVVLDIEFRNRLLRLLLSSFLTETEPDYFSVGKCVVHLNDASVAAKLLMKL-SSQNDDKSLLTAYQLAFDLEDSAPQEFLNSVMDLLPSPSV-------------------ANSEED---------ANADSKKEDSSPCGYIIR------ILSGEQTVKYDREFLYAHNNTDMLILNRTKDSLEARNSVFHNAVTFANAFMNFGTSSDSFFRDNLSWLSKA 378 The following BLAST results are available for this feature:
BLAST of DY260198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >DY260198 ID=DY260198; Name=DY260198; organism=Citrus clementina; type=EST; length=1045bpback to top |