DY260198

Overview
NameDY260198
Unique NameDY260198
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1045
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig8684 contig Ccv1_Contig8684:715..1759. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: PSMD1_DROME (26S proteasome non-ATPase regulatory subunit 1 OS=Drosophila melanogaster GN=Rpn2 PE=1 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.767e-45
Identity = 105/273 (38.46%), Postives = 159/273 (58.24%), Query Frame = 2
Query:    2 CITDV*YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHL----PVPKTQPLQTVQPGSNDPPSAQNDSSTAE-DVQMNEGTPASNV---NVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796
            C+ D  ++QA+GIA+E RR+D  ++AI +SD+V G L+Y  NV+ S +                 + L  PDY+++CQCL+FL++P  V  +L+ L RS  + + L+A+QIAFDL E+  Q FL NV  HL    P+P   P      G+     A+++   ++ D  + E TPA +     +   +  E ++ + + K+  ILSGE SI L LQFL   N +DL +L+  K++V  R S+CH+AT+ ANA M +GTT D F R+NLD L R+
Sbjct:  141 CLDDNQFRQALGIALETRRMDTFKDAIMKSDDVRGMLAYAYNVTMSLIQNRGFRNEVLRCLVSLYRDLGVPDYVNMCQCLIFLEDPFAVAEMLDNLTRSSVETNNLMAYQIAFDLYESATQEFLGNVLQHLKNTAPIPTALPSTFKPQGTTSEDGAKSEGDKSKSDEDITEETPADDKVERTIDSLNEVEKLHQKNIEKLISILSGEVSIDLQLQFLIRSNHADLQVLRGTKEAV--RVSICHTATVIANAFMHSGTTSDQFLRDNLDWLARA 411          
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: PSMD1_MOUSE (26S proteasome non-ATPase regulatory subunit 1 OS=Mus musculus GN=Psmd1 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 1.202e-42
Identity = 108/268 (40.30%), Postives = 156/268 (58.21%), Query Frame = 2
Query:    2 CITDV*YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796
            C+ D  Y+QA+GIA+E RRLD  E+ I  S++V G L+Y + +  S +                   L  PD++++CQCL+FLD+P+ V  ILEKL++   +D+ L+A+QI FDL E+  Q FL +V  +L    T P+ +V PGS +    P ++ DS   E  +      A        +PK+    + L  IK ILSGE +I+L LQFL  +N +DL+ILK  K +V  RNSVCH+AT+ AN+ M  GTT D F R+NL+ L R+
Sbjct:  141 CLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDPMETEEKTASAVAGKTPDASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARA 396          
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: PSMD1_RAT (26S proteasome non-ATPase regulatory subunit 1 OS=Rattus norvegicus GN=Psmd1 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 2.051e-42
Identity = 108/268 (40.30%), Postives = 155/268 (57.84%), Query Frame = 2
Query:    2 CITDV*YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796
            C+ D  Y+QA+GIA+E RRLD  E+ I  S++V G L+Y + +  S +                   L  PD++++CQCL+FLD+ + V  ILEKL++ +N    L+A+QI FDL E+  Q FL +V  +L    T P+ +V PGS +    P  + DS + E  +   G  A        +PK+    + L  IK ILSGE +I+L LQFL  +N +DL+ILK  K +V  RNSVCH+AT+ AN+ M  GTT D F R+NL+ L R+
Sbjct:  141 CLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDTQAVSDILEKLVKEDN---LLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGPEKDSDSMETEEKTAGAVAGKTPDASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARA 396          
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: PSMD1_HUMAN (26S proteasome non-ATPase regulatory subunit 1 OS=Homo sapiens GN=PSMD1 PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 2.051e-42
Identity = 107/268 (39.93%), Postives = 156/268 (58.21%), Query Frame = 2
Query:    2 CITDV*YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796
            C+ D  Y+QA+GIA+E RRLD  E+ I  S++V G L+Y + +  S +                   L  PD++++CQCL+FLD+P+ V  ILEKL++   +D+ L+A+QI FDL E+  Q FL +V  +L    T P+ +V PGS +    P ++ DS + E  +               +PK+    + L  IK ILSGE +I+L LQFL  +N +DL+ILK  K +V  RNSVCH+AT+ AN+ M  GTT D F R+NL+ L R+
Sbjct:  141 CLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDSMETEEKTSSAFVGKTPEASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARA 396          
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: PSMD1_PONAB (26S proteasome non-ATPase regulatory subunit 1 OS=Pongo abelii GN=PSMD1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.679e-42
Identity = 107/268 (39.93%), Postives = 159/268 (59.33%), Query Frame = 2
Query:    2 CITDV*YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDE---DPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796
            C+ D  Y+QA+GIA+E RRLD  E+ I  S++V G L+Y + +  S +                   L  PD++++CQCL+FLD+P+ V  ILEKL++   +D+ L+A+QI FDL E+  Q FL +V  +L    T P+ +V PGS +  +       ++ ++  E T ++ V    E   +PK+    + L  IK ILSGE +I+L LQFL  +N +DL+ILK  K +V  RNSVCH+AT+ AN+ M  GTT D F R+NL+ L R+
Sbjct:  141 CLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDSMETEEKTGSAFVGKTPEASPEPKD----QTLKMIK-ILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARA 396          
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: PSMD1_CHICK (26S proteasome non-ATPase regulatory subunit 1 OS=Gallus gallus GN=PSMD1 PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 2.679e-42
Identity = 106/268 (39.55%), Postives = 158/268 (58.96%), Query Frame = 2
Query:    2 CITDV*YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDP---PSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796
            C+ D  Y+QA+GIA+E RRLD  E+ I  S++V G L+Y + +  S +                   L  PD++++CQCL+FLD+P+ V  ILEKL++   +D+ L+A+QI FDL E+  Q FL +V  +L    T P+ +V PGS +    P ++ DS   E  +    T        + +PK     ++++K+  ILSGE +I+L LQFL  +N +DL+ILK  K +V  RNSVCH+AT+ AN+ M  GTT D F R+NL+ L R+
Sbjct:  141 CLDDHKYKQAIGIALETRRLDIFEKTILESNDVPGMLAYSLKLCMSLMQNKQFRNKVLRVLVKIYMNLEKPDFINVCQCLIFLDDPQAVSDILEKLVK---EDNLLMAYQICFDLYESASQQFLSSVIQNLRTVGT-PIASV-PGSTNTGTVPGSEKDSDAMEAEEKPGSTCVGKSAEINPEPK-----DQISKMIKILSGEMAIELHLQFLIRNNNTDLMILKNTKDAV--RNSVCHTATVIANSFMHCGTTSDQFLRDNLEWLARA 396          
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: PSMD1_DICDI (26S proteasome non-ATPase regulatory subunit 1 OS=Dictyostelium discoideum GN=psmD1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.165e-37
Identity = 99/267 (37.08%), Postives = 152/267 (56.93%), Query Frame = 2
Query:    2 CITDV*YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALLAFQIAFDLVENEHQAFLLNVRDHL-PVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEM-RNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796
            C  +  Y+QA+GIAIE RRLD +E+AI++S NV+  LSYC+++ +  VN                     PDYLS+ QCL+FLD    V +IL  L++ ++++  LLA+QI FDL +N  Q FLLNVR+ L PV K     T    ++D      DS        NE +  S+            + +RL ++  IL G+ SI + L+FLY +  +D+ IL+++K + E+ + ++ +S T++ANA+M AGTT D F R N++ L +S
Sbjct:  139 CFKEGSYKQALGIAIEARRLDIIEKAISQSGNVNSMLSYCLHICNVSVNNRHFRHSVLGILVNLHLAQEKPDYLSVVQCLIFLDNHIEVATILLSLIK-KDEESLLLAYQIGFDLFQNSTQQFLLNVRNRLPPVEKKSTTTTTTTPASDSMEIDIDSG-------NEKSGGSS-----------SFEQRLERLHSILIGDVSIGMNLEFLYRNCSTDMHILQSMKTTSELHKGAIFYSGTLFANALMHAGTTRDTFLRSNIEWLYKS 386          
BLAST of DY260198 vs. ExPASy Swiss-Prot
Match: RPN2_SCHPO (26S proteasome regulatory subunit rpn2 OS=Schizosaccharomyces pombe GN=rpn2 PE=1 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 9.571e-24
Identity = 83/260 (31.92%), Postives = 127/260 (48.85%), Query Frame = 2
Query:   20 YQQAMGIAIECRRLDKLEEAITRSDNVHGTLSYCINVSHSFVNXXXXXXXXXXXXXXXXQKLPSPDYLSICQCLMFLDEPEGVVSILEKLLRSENKDDALL-AFQIAFDLVENEHQAFLLNVRDHLPVPKTQPLQTVQPGSNDPPSAQNDSSTAEDVQMNEGTPASNVNVQDEDPKEVIYAERLNKIKGILSGETSIQLTLQFLYSHNKSDLLILKTIKQSVEMRNSVCHSATIYANAIMPAGTTVDPFPRENLDRLNRS 796
            ++  +GIAIE  RLD +E  I  +D       Y + ++ + V                      PDY S+ +C++ L++      +L KL  S+N D +LL A+Q+AFDL ++  Q FL +V D LP P                     +++ ED         +N + + ED     Y  R      ILSGE +++   +FLY+HN +D+LIL   K S+E RNSV H+A  +ANA M  GT+ D F R+NL  L+++
Sbjct:  155 WRHVLGIAIEAHRLDIIEY-ILNADKETDLKPYVLELAMTVVLDIEFRNRLLRLLLSSFLTETEPDYFSVGKCVVHLNDASVAAKLLMKL-SSQNDDKSLLTAYQLAFDLEDSAPQEFLNSVMDLLPSPSV-------------------ANSEED---------ANADSKKEDSSPCGYIIR------ILSGEQTVKYDREFLYAHNNTDMLILNRTKDSLEARNSVFHNAVTFANAFMNFGTSSDSFFRDNLSWLSKA 378          
The following BLAST results are available for this feature:
BLAST of DY260198 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
PSMD1_DROME5.767e-4538.4626S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_MOUSE1.202e-4240.3026S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_RAT2.051e-4240.3026S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_HUMAN2.051e-4239.9326S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_PONAB2.679e-4239.9326S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_CHICK2.679e-4239.5526S proteasome non-ATPase regulatory subunit 1 OS=... [more]
PSMD1_DICDI1.165e-3737.0826S proteasome non-ATPase regulatory subunit 1 OS=... [more]
RPN2_SCHPO9.571e-2431.9226S proteasome regulatory subunit rpn2 OS=Schizosa... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YK13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260198 ID=DY260198; Name=DY260198; organism=Citrus clementina; type=EST; length=1045bp
GTGTATTACTGATGTTTAATACCAACAAGCAATGGGAATTGCGATTGAGT
GCCGAAGATTGGATAAACTTGAGGAAGCAATCACCAGGAGCGACAATGTG
CATGGCACTTTGTCATATTGTATTAACGTCTCTCATTCCTTTGTTAATCG
TAGAGAATACCGGCGTGAGGTGCTTCGTCTCCTCGTTAAAGTTTATCAAA
AGCTTCCTTCTCCAGATTATTTGAGCATTTGCCAGTGTCTCATGTTCTTG
GATGAACCCGAAGGTGTTGTGAGCATACTAGAGAAGCTTCTCCGTTCTGA
GAACAAAGATGATGCATTATTGGCATTTCAAATCGCCTTTGATCTTGTGG
AGAATGAGCACCAAGCTTTTCTCTTGAATGTGAGAGATCACCTTCCTGTT
CCTAAAACTCAACCTCTGCAGACAGTGCAACCAGGATCCAATGATCCACC
GTCTGCTCAAAATGATAGTTCTACAGCTGAGGATGTTCAAATGAACGAGG
GAACTCCTGCTTCCAATGTAAATGTACAAGATGAAGATCCAAAGGAAGTA
ATATATGCTGAGAGACTCAATAAAATCAAGGGAATTTTGTCTGGGGAGAC
ATCAATACAACTAACTCTGCAATTCTTATACAGTCATAACAAGTCGGATC
TTTTGATTCTTAAAACTATAAAGCAGTCCGTTGAGATGAGAAACAGTGTT
TGTCATAGTGCAACAATTTATGCCAATGCAATTATGCCCGCCGGAACCAC
TGTGGACCCCTTTCCTAGGGAAAACCTGGACCGGTTGAACCGAAGCCCCC
CATTGGGCCAAGTTTAATGGCAACGGCCGGGGCAAGGTGTTATTTCCCCA
AGGCCCTCCGCAGCCAAGGAGGGTCCCTTATGGCACCCTTACCTTCCCCC
AGGGCCGGGGCCGGGGGGGGGCCCGGCCGCCCCCCACCCCCCAAAGGGGG
GAACCTCCTTTTTCCCTTAACGCCCCCCTTTCCTCCCCACCCCAGGGGCA
AAGGGGCCCTCAAAAAAATTTCCCTCCTTGAAAAGGCCCCAAAGG
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