DY260200

Overview
NameDY260200
Unique NameDY260200
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1084
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1451 contig Ccv1_Contig1451:1..1084. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260200 vs. ExPASy Swiss-Prot
Match: YOOF_SCHPO (Uncharacterized hydroxylase C887.15c OS=Schizosaccharomyces pombe GN=SPBC887.15c PE=1 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 3.696e-42
Identity = 103/277 (37.18%), Postives = 142/277 (51.26%), Query Frame = 1
Query:  160 PILVYWLYSGL-----YVVLGSFDKLDNYRLHSRIDEDEKNLVSKGDVVKGVLLQQFFQAIVAILLFAVTGNGAGA-EANQ----------------QSSP---------IAIARQFVIAMLVMDTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIKTVDDHCGLWLPGNLFHVFLKNNTAHHEIPHQLYGEQIQLCTP------------IPPDVG*NSWNPYAPIPRRKNPK 861
            P+++YW+ S       Y+ L  F+K   YR+H   +   +N V +  VVK VL QQ  + +V I L    G      EA Q                Q +P         I  A Q+  A  ++D+WQYF HRY+H+NK LY  IH+ HHRL VPYA GALYNHP EGL+ DT G  +++L +G+SP+ ++ FF+ +T+KTVDDHCG   P +   +F  NN  +H++ HQ YG Q     P            +PP     S  PY    + KN K
Sbjct:   21 PVIIYWVASAFFGFLHYIELPVFEK---YRIHPPEEIARRNRVPQMAVVKAVLFQQLCEVVVGIALAMFEGYPEPIDEAKQMLRYEAFFSKNLPALLQVAPFAPKLAYNFIVPAFQYFFAFFIIDSWQYFWHRYLHYNKKLYNMIHAHHHRLQVPYAMGALYNHPFEGLILDTFGAGVAYLAAGLSPQQAVIFFTLSTLKTVDDHCGYVFPYDPLQMFFANNARYHDLHHQPYGFQKNFSQPFFTFWDHVLGTYMPP----KSETPYEKKQKAKNAK 290          
BLAST of DY260200 vs. ExPASy Swiss-Prot
Match: SUR2_YEAST (Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces cerevisiae GN=SUR2 PE=1 SV=1)

HSP 1 Score: 165.622 bits (418), Expect = 1.113e-41
Identity = 87/241 (36.10%), Postives = 130/241 (53.94%), Query Frame = 1
Query:  130 ISDELLGTFVPILVYWLYSGLYVVLGSFDKLDNYRLHSRIDEDEKNLVSKGDVVKGVLLQQFFQAIVAILL-----FAVTGNGAGAEANQQSSPIAI---------------ARQFVIAMLVMDTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIKTVDDHCGLWLPGNLFHVFLKNNTAHHEIPHQLYGEQIQLCTP 792
            +SD +L    P++ YW  SG++ V+ +F   + YR+H   +  ++N  S+  V   V+LQ   Q IV ++        +TG    A    ++    I               A +     L +DTWQYF+HR MH NK LY+  HS+HH L VPYA+GAL+N+P+EG L DT+G  ++  ++ ++ R  I  F+FAT+KTVDDHCG  LP + F     NN  +H+I HQ +G +     P
Sbjct:   46 MSDGVLALVAPVVAYWALSGIFHVIDTFHLAEKYRIHPSEEVAKRNKASRMHVFLEVILQHIIQTIVGLIFMHFEPIYMTGFEENAMWKLRADLPRIIPDAAIYYGYMYGMSALKIFAGFLFVDTWQYFLHRLMHMNKTLYKWFHSVHHELYVPYAYGALFNNPVEGFLLDTLGTGIAMTLTHLTHREQIILFTFATMKTVDDHCGYALPLDPFQWLFPNNAVYHDIHHQQFGIKTNFAQP 286          

HSP 2 Score: 26.9498 bits (58), Expect = 1.113e-41
Identity = 14/33 (42.42%), Postives = 17/33 (51.52%), Query Frame = 2
Query:  767 GSKYNFAHPFLLMWDKIPGTHMPPFPG-EKTQR 862
            G K NFA PF   WD +  T+   F   +K QR
Sbjct:  278 GIKTNFAQPFFTFWDNLFQTNFKGFEEYQKKQR 310          
BLAST of DY260200 vs. ExPASy Swiss-Prot
Match: ERG25_PIG (C-4 methylsterol oxidase OS=Sus scrofa GN=SC4MOL PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.160e-11
Identity = 42/124 (33.87%), Postives = 67/124 (54.03%), Query Frame = 1
Query:  397 IAIARQFVIAMLVMDTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFAT---IKTVDDHCGLWLPGNLFHVF-LKNNTAHHEIPH 756
            IA+AR F  A+ + DTW YF+HR +HH + +Y++IH +HH    P+   A Y HP+E L+   +G      +  +   V I  +++ T   I+T+D H G  +P N  H+      + HH+  H
Sbjct:  137 IALARCFGCAV-IEDTWHYFLHRLLHHKR-IYKYIHKIHHEFQAPFGMEAEYAHPLETLI---LGTGFFIGIMLLCDHV-ILLWAWVTVRLIETIDVHSGYDIPLNPLHLIPFYAGSRHHDFHH 254          
BLAST of DY260200 vs. ExPASy Swiss-Prot
Match: CE004_MACFA (Uncharacterized protein C5orf4 homolog OS=Macaca fascicularis GN=QccE-20373 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 5.756e-11
Identity = 57/211 (27.01%), Postives = 93/211 (44.08%), Query Frame = 1
Query:  157 VPILVYWLYSGLYVVLGSFDKLDNYRLHSRIDEDEKNLVSKGDVVKGVLLQQFFQAIVA--ILLFAVTGNGAGAEANQQSSPIA--IARQFVIAMLVMDTWQYFMHRYMHHNKFLYRHIHSLHHRLVVPYAFGALYNHPIEGLLNDTIGGALSFLVSGMSPRVSIFFFSFATIKTVDDHCGL---WLPGNLFHVFLKNNTAHHEIPHQLYG 768
            VP L +W ++GL +V+ +  K  N+    RI   +   V    + + +    F Q +V+  +++F         +  ++  P       +  I  L+ +   Y+ HR +HH  F Y+ IH  HH    P    +LY HPIE ++++ +   +  LV G        +FS A I T   HCG    +LP   FH +      HH   +Q YG
Sbjct:   86 VPCLFFWSFNGLLLVVDTTGK-PNFISRYRIQVGKNEPVDPVKLRQSIRTVLFNQCMVSFPMVVFLYPFLKWWGDPCRRELPTFHWFLLELAIFTLIEEVLFYYSHRLLHHPTF-YKKIHKKHHEWTAPIGVISLYAHPIEHVVSNMLPAIVGPLVMGSHLSSITMWFSLALIITTISHCGYHLPFLPSPEFHDY------HHLKFNQCYG 288          
The following BLAST results are available for this feature:
BLAST of DY260200 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
YOOF_SCHPO3.696e-4237.18Uncharacterized hydroxylase C887.15c OS=Schizosacc... [more]
SUR2_YEAST1.113e-4136.10Sphingolipid C4-hydroxylase SUR2 OS=Saccharomyces ... [more]
ERG25_PIG1.160e-1133.87C-4 methylsterol oxidase OS=Sus scrofa GN=SC4MOL P... [more]
CE004_MACFA5.756e-1127.01Uncharacterized protein C5orf4 homolog OS=Macaca f... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YK16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260200 ID=DY260200; Name=DY260200; organism=Citrus clementina; type=EST; length=1084bp
ACAAACACAGCTTTGGGTTTTGGTTGGTTTATCTTGTAAGAGCATTAATA
CTTTATATATTCGCAATAAAAGTTTAGGGCACTTTGAGCGAGTGTCCCGT
TGGCGATCGTCAACACGATGGCGTTTACGATTTCCGACGAATTGTTGGGC
ACTTTCGTCCCAATTTTAGTCTATTGGTTGTATTCAGGATTATACGTCGT
TCTTGGATCTTTTGATAAGCTTGATAATTATAGATTGCATTCGAGAATTG
ACGAGGACGAGAAAAATTTGGTCTCTAAGGGCGATGTCGTTAAAGGCGTT
CTCCTTCAGCAATTTTTTCAGGCTATTGTTGCAATTCTCTTGTTTGCGGT
GACAGGAAATGGTGCTGGGGCAGAAGCCAATCAACAGTCTTCTCCAATTG
CTATAGCTCGGCAGTTTGTTATAGCAATGTTGGTTATGGATACATGGCAG
TATTTTATGCACAGGTACATGCACCACAACAAGTTTTTGTATCGACACAT
CCATTCTCTACATCACCGCCTTGTTGTCCCCTATGCATTTGGAGCTTTGT
ATAATCACCCCATTGAGGGGCTTCTTAATGACACAATTGGCGGAGCCTTA
TCTTTTCTCGTTTCCGGTATGTCTCCCCGAGTCTCCATCTTCTTCTTTTC
CTTTGCCACCATCAAAACAGTGGATGACCACTGTGGATTATGGCTTCCTG
GAAACCTCTTCCACGTGTTCCTCAAAAACAACACTGCCCATCATGAAATC
CCCCATCAACTTTATGGGGAGCAAATACAACTTTGCACACCCATTCCTCC
TGATGTGGGATAAAATTCCTGGAACCCATATGCCCCCATTCCCCGGAGAA
AAAACCCAAAGGGGGGCCTTTGAAGCCCCCGGGCAACAAGGGATTACCAT
CCCAAACAAAGAATTACCAGGGACCACGGATTTAACCCTTAAGGACCCCC
CGTTTGGACCAACCATTATTTTAATTTTTATTTTTTTTCTCCCTTTTCCC
CCTTTCCCGAAGAAAACCCCCCCCGCCCCGGGGAATTTTGACAAAACCTC
AAAATTGGTTTGGGTTTTTTATATATTCCCCACC
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