DY260201

Overview
NameDY260201
Unique NameDY260201
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length547
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1452 contig Ccv1_Contig1452:1..547. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260201 vs. ExPASy Swiss-Prot
Match: CAX5_ARATH (Vacuolar cation/proton exchanger 5 OS=Arabidopsis thaliana GN=CAX5 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.686e-19
Identity = 45/52 (86.54%), Postives = 48/52 (92.31%), Query Frame = 1
Query:    1 LFETLSPFLTVIVVAFFLQEGTSNYFKGLLLILCYLIVAASFFVHEDPTSDD 156
            LFET + F+TVIVVAFFLQEGTSNYFKGL+LILCYLIVAASFFVHEDP  DD
Sbjct:  389 LFETATLFITVIVVAFFLQEGTSNYFKGLMLILCYLIVAASFFVHEDPHQDD 440          
BLAST of DY260201 vs. ExPASy Swiss-Prot
Match: CAX2_ARATH (Vacuolar cation/proton exchanger 2 OS=Arabidopsis thaliana GN=CAX2 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 1.647e-17
Identity = 43/51 (84.31%), Postives = 46/51 (90.20%), Query Frame = 1
Query:    1 LFETLSPFLTVIVVAFFLQEGTSNYFKGLLLILCYLIVAASFFVHEDPTSD 153
            LFET   F+TVIVVAFFLQEG+SNYFKGL+LILCYLIVAASFFVHEDP  D
Sbjct:  389 LFETAMLFITVIVVAFFLQEGSSNYFKGLMLILCYLIVAASFFVHEDPHQD 439          
BLAST of DY260201 vs. ExPASy Swiss-Prot
Match: CAX2_ORYSJ (Vacuolar cation/proton exchanger 2 OS=Oryza sativa subsp. japonica GN=CAX2 PE=2 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 2.809e-17
Identity = 42/54 (77.78%), Postives = 48/54 (88.89%), Query Frame = 1
Query:    1 LFETLSPFLTVIVVAFFLQEGTSNYFKGLLLILCYLIVAASFFVHEDPTSDDNQ 162
            LFET + F+TV+VVAF LQEGTSNYFKGL+LILCYLIVAASFFVH DP S +N+
Sbjct:  384 LFETATLFITVLVVAFMLQEGTSNYFKGLMLILCYLIVAASFFVHVDPDSSNNK 437          
BLAST of DY260201 vs. ExPASy Swiss-Prot
Match: CAX3_ORYSJ (Vacuolar cation/proton exchanger 3 OS=Oryza sativa subsp. japonica GN=CAX3 PE=2 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 3.434e-15
Identity = 38/53 (71.70%), Postives = 45/53 (84.91%), Query Frame = 1
Query:    1 LFETLSPFLTVIVVAFFLQEGTSNYFKGLLLILCYLIVAASFFVHEDPTSDDN 159
            LFET + F+TV+VVAF LQ+G +NY KGL+LILCYLIVAASFFVH DP S D+
Sbjct:  365 LFETATLFITVLVVAFMLQDGVANYLKGLMLILCYLIVAASFFVHVDPQSSDD 417          
BLAST of DY260201 vs. ExPASy Swiss-Prot
Match: CAX6_ARATH (Putative vacuolar cation/proton exchanger 6 OS=Arabidopsis thaliana GN=CAX6 PE=3 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 9.991e-15
Identity = 41/49 (83.67%), Postives = 44/49 (89.80%), Query Frame = 1
Query:    1 LFETLSPFLTVIVVAFFLQ-EGTSNYFKGLLLILCYLIVAASFFVHEDP 144
            LFET +  +TVIVVAFFLQ EGTSNYFK L+LILCYLIVAASFFVHEDP
Sbjct:  397 LFETATLLITVIVVAFFLQLEGTSNYFKRLMLILCYLIVAASFFVHEDP 445          
BLAST of DY260201 vs. ExPASy Swiss-Prot
Match: CAX4_ORYSJ (Putative vacuolar cation/proton exchanger 4 OS=Oryza sativa subsp. japonica GN=Os02g0138900 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.160e-13
Identity = 36/50 (72.00%), Postives = 40/50 (80.00%), Query Frame = 1
Query:    1 LFETLSPFLTVIVVAFFLQEGTSNYFKGLLLILCYLIVAASFFVHEDPTS 150
            LFET S   TV+VVAF LQ+GTSN  KGL+L LCYLIVAASF+VH DP S
Sbjct:  389 LFETASLLTTVLVVAFLLQDGTSNCVKGLMLFLCYLIVAASFYVHADPNS 438          
The following BLAST results are available for this feature:
BLAST of DY260201 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
CAX5_ARATH6.686e-1986.54Vacuolar cation/proton exchanger 5 OS=Arabidopsis ... [more]
CAX2_ARATH1.647e-1784.31Vacuolar cation/proton exchanger 2 OS=Arabidopsis ... [more]
CAX2_ORYSJ2.809e-1777.78Vacuolar cation/proton exchanger 2 OS=Oryza sativa... [more]
CAX3_ORYSJ3.434e-1571.70Vacuolar cation/proton exchanger 3 OS=Oryza sativa... [more]
CAX6_ARATH9.991e-1583.67Putative vacuolar cation/proton exchanger 6 OS=Ara... [more]
CAX4_ORYSJ7.160e-1372.00Putative vacuolar cation/proton exchanger 4 OS=Ory... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YK18FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260201 ID=DY260201; Name=DY260201; organism=Citrus clementina; type=EST; length=547bp
CTTTTTGAGACCCTTTCTCCTTTCCTAACTGTTATAGTTGTGGCATTCTT
TCTGCAGGAAGGAACTTCTAATTACTTTAAAGGACTCCTGCTGATTCTTT
GCTATCTGATTGTAGCTGCTAGTTTCTTTGTGCACGAAGATCCTACTTCA
GATGATAATCAAGTAAAAACTTAGTTCACGAAAGCAGCATATCGGCTTAT
GAGATGTATTTCCTGAAGCTACCGATCAACTTGGGGGCTGCTGTATATAT
TTATATATTCAGCTTCGAAATGCAGACAAGCCATTATCTTGACTTCCCTA
GCTCTTGCTCAGTAACATATTGTGCGGGTTTCTTGCTGTTTTTTGTGCTC
TATCCTTTCAATACCTGCTTTGGTGCTAAATGCCTATGACGAGTAAGAAA
AATTGTGTATATCACAGAGAAAAACGGTTCATTTCTCTTTGCCTTGTAAC
TCTTTCTCAATTCTTTTTGAAGAGATTTCCATTTGTTGCCTCCACTTTGT
GGCACACTATTTCAATGACTGCCAATTAAATGGAAGATTTATAACGC
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