DY260204

Overview
NameDY260204
Unique NameDY260204
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1066
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPIA_DICDI (Peptidyl-prolyl cis-trans isomerase A OS=Dictyostelium discoideum GN=ppiA PE=1 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 3.845e-66
Identity = 70/95 (73.68%), Postives = 77/95 (81.05%), Query Frame = 2
Query:  260 GNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCRPL 544
            GNGTGG+SIYG+KFADENF  KH G G LSMANAG  TNGSQFF+C A T+WLDGKHVVFG V EGMDVVK +E  GS SG+T KPVVIA+C  L
Sbjct:   85 GNGTGGESIYGNKFADENFKLKHFGQGTLSMANAGANTNGSQFFICVAPTDWLDGKHVVFGFVTEGMDVVKKMEAAGSQSGKTTKPVVIANCGQL 179          

HSP 2 Score: 126.331 bits (316), Expect = 3.845e-66
Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 1
Query:   16 INPSKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            + P+   NP+VFF +T+GG  AG+ VMEL+A+  P+TAENF ALCTGEKGIGKSGKPL YKGSSFHRVI  FMCQGGDFT
Sbjct:    4 VKPTSPENPRVFFDITIGGVEAGKVVMELYANTVPKTAENFRALCTGEKGIGKSGKPLSYKGSSFHRVITNFMCQGGDFT 83          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPIF_HUMAN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Homo sapiens GN=PPIF PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 2.420e-59
Identity = 72/95 (75.79%), Postives = 79/95 (83.16%), Query Frame = 2
Query:  263 NGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCRPLS 547
            NGTGG+SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SGRT+K +VI DC  LS
Sbjct:  113 NGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGRTSKKIVITDCGQLS 207          

HSP 2 Score: 95.1301 bits (235), Expect = 2.420e-59
Identity = 47/77 (61.04%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   25 SKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            S   NP V+  +   G P GR V+EL ADV P+TAENF ALCTGEKG G       YKGS+FHRVIP FMCQ GDFT
Sbjct:   41 SSSGNPLVYLDVDANGKPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFT 110          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 155.221 bits (391), Expect = 6.993e-59
Identity = 71/95 (74.74%), Postives = 79/95 (83.16%), Query Frame = 2
Query:  263 NGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCRPLS 547
            NGTGG+SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SG+T+K +VI DC  LS
Sbjct:  112 NGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          

HSP 2 Score: 94.7449 bits (234), Expect = 6.993e-59
Identity = 47/77 (61.04%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   25 SKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            S   NP V+  +   G P GR V+EL ADV P+TAENF ALCTGEKG G       YKGS+FHRVIP FMCQ GDFT
Sbjct:   40 SSSQNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPAFMCQAGDFT 109          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPIF_MOUSE (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Mus musculus GN=Ppif PE=2 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.118e-59
Identity = 71/95 (74.74%), Postives = 79/95 (83.16%), Query Frame = 2
Query:  263 NGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCRPLS 547
            NGTGG+SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SG+T+K +VI DC  LS
Sbjct:  112 NGTGGRSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSKKIVITDCGQLS 206          

HSP 2 Score: 94.3597 bits (233), Expect = 9.118e-59
Identity = 47/77 (61.04%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   25 SKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            S   NP V+  +   G P GR V+EL ADV P+TAENF ALCTGEKG G       YKGS+FHRVIP FMCQ GDFT
Sbjct:   40 SSSGNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPAFMCQAGDFT 109          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPID_NEUCR (41 kDa peptidyl-prolyl cis-trans isomerase OS=Neurospora crassa GN=cyp-41 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.823e-56
Identity = 63/103 (61.17%), Postives = 73/103 (70.87%), Query Frame = 2
Query:  239 RGETSPAGNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCRPLS 547
            +G    AGNGTGG+SIYG+KF DENF  KH  P +LSMANAGPGTNGSQFFV T  T  LDGKHVVFG+V+ G  VV+ IE + +   +  K  VIADC  LS
Sbjct:   78 QGGDFTAGNGTGGESIYGAKFEDENFQLKHDRPFLLSMANAGPGTNGSQFFVTTVPTPHLDGKHVVFGEVLSGKSVVRQIENLKTQGDKPTKDAVIADCGELS 180          

HSP 2 Score: 115.161 bits (287), Expect = 1.823e-56
Identity = 52/76 (68.42%), Postives = 60/76 (78.95%), Query Frame = 1
Query:   28 KMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            K    +VFF +T+GG  AGR V EL+ D+ P+TAENF ALCTGEKG+GK GKPLHYKGS+FHRVI  FM QGGDFT
Sbjct:    8 KQARSRVFFDITIGGKAAGRIVFELYNDIVPKTAENFRALCTGEKGVGKLGKPLHYKGSTFHRVIKQFMIQGGDFT 83          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPID_RHIOR (Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus oryzae GN=cyp12 PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 2.586e-55
Identity = 62/103 (60.19%), Postives = 75/103 (72.82%), Query Frame = 2
Query:  239 RGETSPAGNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADCRPLS 547
            +G    AGNGTGG+SIYG KF DENFV KH  P +LSMANAGPGTNGSQFF+ T  T  LDGKHVVFG+V++G  VV+A+E + + S R  +  VIA C  L+
Sbjct:   70 QGGDFTAGNGTGGESIYGEKFEDENFVLKHEKPFLLSMANAGPGTNGSQFFITTVPTPHLDGKHVVFGKVLKGKAVVRALENLETVSDRPVEDAVIAKCGELA 172          

HSP 2 Score: 114.005 bits (284), Expect = 2.586e-55
Identity = 51/75 (68.00%), Postives = 59/75 (78.67%), Query Frame = 1
Query:   31 MPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            M NP+V+F +T+G  P GR V ELF D+ P+TAENF ALCTGEKG GKSGKPL Y+GS FHR+I  FM QGGDFT
Sbjct:    1 MSNPRVYFDITIGNKPEGRIVFELFKDIVPKTAENFRALCTGEKGEGKSGKPLSYQGSLFHRIIKNFMIQGGDFT 75          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 5.769e-55
Identity = 65/84 (77.38%), Postives = 72/84 (85.71%), Query Frame = 2
Query:  263 NGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK 514
            NGTGG+SIYGS+F DENF  KH GPG+LSMANAGP TNGSQFF+CT KT+WLDGKHVVFG V EGMDVVK IE  GS SG+T+K
Sbjct:  114 NGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHVKEGMDVVKKIESFGSKSGKTSK 197          

HSP 2 Score: 94.3597 bits (233), Expect = 5.769e-55
Identity = 47/77 (61.04%), Postives = 52/77 (67.53%), Query Frame = 1
Query:   25 SKMPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            S   NP V+  +   G P GR V+EL ADV P+TAENF ALCTGEKG G       YKGS+FHRVIP FMCQ GDFT
Sbjct:   42 SSSGNPLVYLDVGADGQPLGRVVLELKADVVPKTAENFRALCTGEKGFG-------YKGSTFHRVIPSFMCQAGDFT 111          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPID_AMAMU (Peptidyl-prolyl cis-trans isomerase D OS=Amanita muscaria GN=Cyp40 PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.799e-53
Identity = 61/104 (58.65%), Postives = 74/104 (71.15%), Query Frame = 2
Query:  239 RGETSPAGNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNK-PVVIADCRPLS 547
            +G    AGNGTGG+SIYG KF DE F   H+ P +LSMANAGP TNGSQFF+  + T  LDGKHVVFG+V++G  VV+ IE   +++G   K PVVIADC  LS
Sbjct:   71 QGGDFTAGNGTGGESIYGEKFEDEGFPVHHSRPFLLSMANAGPNTNGSQFFITVSATPHLDGKHVVFGEVIKGRSVVRTIENNPATNGDVPKEPVVIADCGQLS 174          

HSP 2 Score: 112.079 bits (279), Expect = 1.799e-53
Identity = 50/72 (69.44%), Postives = 59/72 (81.94%), Query Frame = 1
Query:   40 PKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            P VFF + +GG  AGR    L++D+ P+TAENF ALCTGEKG+G+SGKPL YKGS+FHRVI GFMCQGGDFT
Sbjct:    5 PIVFFDIAIGGQLAGRVAFRLYSDLVPKTAENFRALCTGEKGLGQSGKPLWYKGSAFHRVIKGFMCQGGDFT 76          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PAL4A_HUMAN (Peptidylprolyl cis-trans isomerase A-like 4A OS=Homo sapiens GN=PPIAL4A PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.979e-52
Identity = 61/91 (67.03%), Postives = 75/91 (82.42%), Query Frame = 2
Query:  263 NGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSGRTNKPVVIADC 535
            NGTG +SIYG KF DEN ++KHTG GILSMANAGP TNGSQFF+CTAKTEWLDGKHV FG+V E +++V+A+E  G  + +T+K + IADC
Sbjct:   71 NGTGDKSIYGEKFDDENLIRKHTGSGILSMANAGPNTNGSQFFICTAKTEWLDGKHVAFGKVKERVNIVEAMEHFGYRNSKTSKKITIADC 161          

HSP 2 Score: 91.2781 bits (225), Expect = 1.979e-52
Identity = 45/75 (60.00%), Postives = 51/75 (68.00%), Query Frame = 1
Query:   31 MPNPKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            M N  +FF +TV G P GR  ++ FAD  P+TAENF AL TGEKG         YKGS FHR+IPGFMCQGGDFT
Sbjct:    1 MVNSVIFFDITVDGKPLGRISIKQFADKIPKTAENFRALSTGEKG-------FRYKGSCFHRIIPGFMCQGGDFT 68          
BLAST of DY260204 vs. ExPASy Swiss-Prot
Match: PPID_GIBZE (Peptidyl-prolyl cis-trans isomerase D OS=Gibberella zeae GN=CPR6 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 2.549e-52
Identity = 59/104 (56.73%), Postives = 72/104 (69.23%), Query Frame = 2
Query:  239 RGETSPAGNGTGGQSIYGSKFADENFVKKHTGPGILSMANAGPGTNGSQFFVCTAKTEWLDGKHVVFGQVVEGMDVVKAIEKVGSSSG-RTNKPVVIADCRPLS 547
            +G    AG+GTGG+SIYG+KF DE F  KH  P +LSMANAGP TNGSQFF+ T  T  LDGKHVVFG+V+ G  VV+ IE + + SG R  K  +I DC  L+
Sbjct:   77 QGGDFTAGDGTGGESIYGNKFDDEAFPIKHEKPFLLSMANAGPNTNGSQFFITTVPTPHLDGKHVVFGEVLNGKSVVRQIENLTTQSGDRPAKEALIVDCGELT 180          

HSP 2 Score: 113.62 bits (283), Expect = 2.549e-52
Identity = 50/72 (69.44%), Postives = 60/72 (83.33%), Query Frame = 1
Query:   40 PKVFFHMTVGGPPAGRFVMELFADVTPRTAENFPALCTGEKGIGKSGKPLHYKGSSFHRVIPGFMCQGGDFT 255
            P+V+F +++GG   GR  MEL+AD+ P+TA+NF +LCTGEKGIGKSGKPLHYKGS FHRVI  FM QGGDFT
Sbjct:   11 PRVYFDISIGGKSVGRITMELYADLVPKTADNFRSLCTGEKGIGKSGKPLHYKGSVFHRVIKQFMIQGGDFT 82          
The following BLAST results are available for this feature:
BLAST of DY260204 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 240
Match NameE-valueIdentityDescription
PPIA_DICDI3.845e-6673.68Peptidyl-prolyl cis-trans isomerase A OS=Dictyoste... [more]
PPIF_HUMAN2.420e-5975.79Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_RAT6.993e-5974.74Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIF_MOUSE9.118e-5974.74Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPID_NEUCR1.823e-5661.1741 kDa peptidyl-prolyl cis-trans isomerase OS=Neur... [more]
PPID_RHIOR2.586e-5560.19Peptidyl-prolyl cis-trans isomerase D OS=Rhizopus ... [more]
PPIF_BOVIN5.769e-5577.38Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPID_AMAMU1.799e-5358.65Peptidyl-prolyl cis-trans isomerase D OS=Amanita m... [more]
PAL4A_HUMAN1.979e-5267.03Peptidylprolyl cis-trans isomerase A-like 4A OS=Ho... [more]
PPID_GIBZE2.549e-5256.73Peptidyl-prolyl cis-trans isomerase D OS=Gibberell... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260204 ID=DY260204; Name=DY260204; organism=Citrus clementina; type=EST; length=1066bp
GTTTTTTTCCCCCTCATCAACCCATCCAAAATGCCAAACCCCAAAGTGTT
CTTCCACATGACCGTCGGCGGTCCGCCCGCCGGCAGGTTCGTGATGGAGC
TCTTCGCCGATGTCACCCCCCGAACCGCCGAGAACTTCCCCGCCCTCTGC
ACCGGCGAGAAAGGCATCGGCAAGTCCGGCAAGCCACTCCACTACAAGGG
CTCGTCCTTCCACCGTGTGATCCCCGGATTCATGTGCCAGGGGGGAGACT
TCACCCGCCGGAAACGGAACCGGAGGCCAATCAATCTACGGCTCAAAATT
CGCCGATGAGAACTTCGTGAAGAAGCACACCGGCCCCGGAATCCTCTCCA
TGGCGAATGCCGGACCCGGAACCAACGGATCTCAGTTCTTCGTCTGTACG
GCCAAGACCGAGTGGCTCGATGGGAAGCACGTTGTGTTCGGTCAAGTCGT
CGAAGGAATGGACGTCGTCAAGGCCATCGAGAAAGTGGGGTCCAGCTCCG
GAAGGACCAACAAGCCCGTCGTGATCGCTGATTGCCGTCCATTGTCTTAG
ATTTGATCCTGATAATGATCGCCCTCATCCACAGCCGTCTGATCGCGATC
GTGATGGTGATTATGTTATCTATTATTATGTGGCCGTGTCCGTAGGACTT
TTAATCTTTATCTAATTTTCCCGCCATGTTCCTTGTTCCGGTTGGATCGG
GTCTCCCGTGGTGGTTCCTGAAGAACTGTTTTTTATGTCCTTCCATGAGC
CGCCTTTTTAAATAAAACAAGGCCTTGTCCCTGTAAATTAAAAAAAAAAA
AAAAAAAAAAACCCCAACTTCCTTGTACAAAGTTGGGACTAAAAAAAAAA
CCTTGCCTTATCATCTTTTTCCCCCAACCGGGTCCCCATCCCCCCCACTT
AAAATTCCTTTATTTCCCCACCCCCCCTAAACCCCCCCCAAAACCAGTCC
CTAATACACGGGCCCATAGCCCGTTTCCCCGGGCCCCCCCCGCCCCGCTC
TTCCCCAAATCCCCCGCAAGTTTTCCTTCGGCCTAGAATACCAAAAATCT
CTCCCTCGCTCTTCAA
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