DY260205

Overview
NameDY260205
Unique NameDY260205
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1028
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15389 contig Ccv1_Contig15389:237..1264. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260205 vs. ExPASy Swiss-Prot
Match: RTNLA_ARATH (Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1 SV=1)

HSP 1 Score: 280.411 bits (716), Expect = 1.160e-74
Identity = 134/200 (67.00%), Postives = 158/200 (79.00%), Query Frame = 2
Query:    2 KADIYPLFGRERPVHQVFRGGKPADVFLWRNKKISAGVLGGAPAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPV 601
            K+ +Y LFGRE+PVH+V  GGKPAD+F+W+NKK+S GVLGGA A WV+FEL EYHLLTL+CH           W+NA  FI K+PP IPEVH+PEEP LQ+AS  RIE+N  F+ LR IASGRDLK FL+AIA LWVLS++G   NFLTL YIALVLL  VP+ Y+KYEDK+DPL EKAMIE+KKQYAV D KVLSKIP+
Sbjct:   67 KSKVYRLFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIVVLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLKKFLIAIAGLWVLSILGGCFNFLTLAYIALVLLFTVPLAYDKYEDKVDPLGEKAMIELKKQYAVLDEKVLSKIPL 266          
BLAST of DY260205 vs. ExPASy Swiss-Prot
Match: RTNLE_ARATH (Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 2.585e-74
Identity = 133/200 (66.50%), Postives = 156/200 (78.00%), Query Frame = 2
Query:    2 KADIYPLFGRERPVHQVFRGGKPADVFLWRNKKISAGVLGGAPAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPV 601
            KA IY +FGRE+PVH+V  GGKPADVFLWR+KK+S  VLG A AIWVLFEL EYHLL+L+CH           W+NAHT I K  P IPE+H+PEE FL VAS+ R ELN AF +LRSIA GRDLK FLM +  LW++SVVG+W NFLTL YI  V+LH VP+LYEK+EDK+DPLAEKAM E++KQY VFD KVLSKIP+
Sbjct:   46 KAKIYRMFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISILALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLKKFLMVVVGLWIISVVGNWFNFLTLVYICFVILHTVPMLYEKHEDKVDPLAEKAMKELQKQYVVFDEKVLSKIPI 245          
BLAST of DY260205 vs. ExPASy Swiss-Prot
Match: RTNLF_ARATH (Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.734e-70
Identity = 128/200 (64.00%), Postives = 151/200 (75.50%), Query Frame = 2
Query:    2 KADIYPLFGRERPVHQVFRGGKPADVFLWRNKKISAGVLGGAPAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPV 601
            KA IY LFGRE+PVH+V  GG PADVFLWR+KK+SA VLG A AIWVLFEL EYH L+LVCH            +NAH F+ K PP IPE+H+ EE FL + SA R ELN AF +LRSIA GRDLK FLM +  LW++SVVG+W NFLTL YI  V+LH VP+LYEK+EDK+DP+AEK + E+KK Y VFD KVLSK+PV
Sbjct:   46 KAKIYRLFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIFALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLKKFLMVVFGLWIISVVGNWFNFLTLVYICFVVLHTVPMLYEKHEDKVDPVAEKTLKELKKHYMVFDEKVLSKLPV 245          
BLAST of DY260205 vs. ExPASy Swiss-Prot
Match: RTNLB_ARATH (Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.862e-70
Identity = 127/199 (63.82%), Postives = 150/199 (75.38%), Query Frame = 2
Query:    2 KADIYPLFGRERPVHQVFRGGKPADVFLWRNKKISAGVLGGAPAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIP 598
            K+ +Y LFGRERPVH+V  GGKPAD+F+W++KK+S GV GGA   WVLFEL EYHLLTL+CH           W+NA  FI K+PP IPEVH+PEEP LQ+AS  RIE+N   + LR IASGRD+K FL AIA LWVLS++G   +FLTL YIALVLL  VP+ Y+KYEDK+D   EKAM E+KKQYAV DAKV SKIP
Sbjct:   63 KSKVYRLFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIVALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIKKFLSAIAGLWVLSILGGCYSFLTLAYIALVLLFTVPLFYDKYEDKVDSYGEKAMAELKKQYAVLDAKVFSKIP 261          
BLAST of DY260205 vs. ExPASy Swiss-Prot
Match: RTNLD_ARATH (Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1 SV=1)

HSP 1 Score: 263.462 bits (672), Expect = 1.468e-69
Identity = 127/204 (62.25%), Postives = 150/204 (73.53%), Query Frame = 2
Query:    2 KADIYPLFGRERPVHQVFRGGKPADVFLWRNKKISAGVLGGAPAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPVKAKR 613
            K+ IY LFGRE+PVH+V  GGKPAD+FLWRNKK+S GVLG   A WVLFELFEYHLL  +CH           W+NA TFI K+ P IPEVH+PE+P LQ+ S  RIE+N    +LR+IASG+D+K F++ IA LWVLS++GS  NFLTLFY A VLL  +PVLYEKYEDK+D   EKAM EIKKQYAV D KVL K+  K  R
Sbjct:   46 KSKIYRLFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIFALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVKKFILVIAGLWVLSIIGSCYNFLTLFYTATVLLFTIPVLYEKYEDKVDAYGEKAMREIKKQYAVLDEKVLRKVISKIPR 249          
BLAST of DY260205 vs. ExPASy Swiss-Prot
Match: RTNLC_ARATH (Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.623e-68
Identity = 129/201 (64.18%), Postives = 148/201 (73.63%), Query Frame = 2
Query:    2 KADIYPLFGRERPVHQVFRGGKPADVFLWRNKKISAGVLGGAPAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPVK 604
            K  IY LFGRE+P+H++F GGKPAD+FLWRNKK+S GVLG A   W+LFEL EY+LLTL  H           W++A TFI K+P  IPEVH+PE+  LQ+AS  RIE+N  F VLR IASGRDLK FL+ IA LWVLS VGS CNFLTL YIA VLL  +PVLYEKYEDK+D   EKAM EIKKQY  FD KVLSK+  K
Sbjct:   42 KTKIYRLFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISILALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLKKFLLVIAGLWVLSKVGSSCNFLTLIYIATVLLFTIPVLYEKYEDKVDDFGEKAMREIKKQYVEFDVKVLSKVMSK 242          
BLAST of DY260205 vs. ExPASy Swiss-Prot
Match: RTNLG_ARATH (Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=2 SV=2)

HSP 1 Score: 221.861 bits (564), Expect = 4.897e-57
Identity = 107/198 (54.04%), Postives = 141/198 (71.21%), Query Frame = 2
Query:    5 ADIYPLFGRERPVHQVFRGGKPADVFLWRNKKISAGVLGGAPAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIP 598
            A IY +FGRERP+H V  GGKPADV LWR+KK++ G+L     IW+LF      LLT +C            W+NA   + K+P  + ++++PE+P LQ ASA   ELN AFA LRSIA  RD+K+F+MA+  LW++SV+G+W +FL+L YI  VL+H VP+LYEKYED+IDP+AEKA+IE+KK Y VF+AK LSKIP
Sbjct:   49 APIYRMFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSILFLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIKNFVMAVIGLWLVSVIGNWFSFLSLLYICFVLIHTVPMLYEKYEDEIDPIAEKAVIEMKKHYQVFEAKFLSKIP 243          
BLAST of DY260205 vs. ExPASy Swiss-Prot
Match: RTNLH_ARATH (Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.787e-44
Identity = 87/193 (45.08%), Postives = 119/193 (61.66%), Query Frame = 2
Query:   20 LFGRERPVHQVFRGGKPADVFLWRNKKISAGVLGGAPAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIP 598
            LF R++P+H V  GGK ADV LWRNKKISA VL GA AIWVLFE   +H L+LVC+           W+NA  F+ ++   +P + LP++ F +V  A   E+N     L+ +A   +LK FLMA+  LWV ++VGS CNFLT+ YI  V  H +PVLYE+YED++D   +  +++    Y   D   LS+IP
Sbjct:   45 LFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLLGMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLKQFLMAVIGLWVAAMVGSCCNFLTVLYIGFVGAHTMPVLYERYEDEVDGFMDSMIMKFHSHYKKLDTGFLSRIP 237          
BLAST of DY260205 vs. ExPASy Swiss-Prot
Match: RTNLI_ARATH (Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 4.605e-39
Identity = 77/193 (39.90%), Postives = 112/193 (58.03%), Query Frame = 2
Query:   20 LFGRERPVHQVFRGGKPADVFLWRNKKISAGVLGGAPAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIP 598
            LF R+R +H +F GGK AD+ LWR  KI+A ++ G   +W L E+ EY+ +TL+CH           W+ A  F+    P IPEV L E  F Q+A +F +  N     L  +A GRD   F +   +L+++S++G++ NF+ L +I  V +  +PV+YE YED +D  A K M ++KK Y   D  VLSKIP
Sbjct:   23 LFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILWFLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFHVRFNQILTKLLDVACGRDPPLFFLTTISLYIVSIIGTYFNFVNLLFIGFVSMQTLPVMYEMYEDDVDTAAGKLMRKMKKLYKKVDTNVLSKIP 215          
BLAST of DY260205 vs. ExPASy Swiss-Prot
Match: RTNLJ_ARATH (Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.043e-27
Identity = 65/191 (34.03%), Postives = 94/191 (49.21%), Query Frame = 2
Query:   32 ERPVHQVFRGGKPADVFLWRNKKISAGVLGGAPAIWVLFELFEYHLLTLVCHTXXXXXXXXXXWANAHTFIKKAPPCIPEVHLPEEPFLQVASAFRIELNHAFAVLRSIASGRDLKSFLMAIAALWVLSVVGSWCNFLTLFYIALVLLHIVPVLYEKYEDKIDPLAEKAMIEIKKQYAVFDAKVLSKIPVK 604
            E  VHQ  R G  AD+ +W+N++    +LG    +W LFE   Y     V +T          WA +     +  P +P + + EE    VA A R+ +N   AV R I  GR+ K        LW +S VG++ NFLT+ Y+ +VL  ++P LYE+Y+D ID         I+ QY   D ++L KI  K
Sbjct:    2 EESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVVILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLFRVSVVLWTVSFVGNFLNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHRVIQTQYRKIDERLLQKIIAK 192          
The following BLAST results are available for this feature:
BLAST of DY260205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RTNLA_ARATH1.160e-7467.00Reticulon-like protein B1 OS=Arabidopsis thaliana ... [more]
RTNLE_ARATH2.585e-7466.50Reticulon-like protein B5 OS=Arabidopsis thaliana ... [more]
RTNLF_ARATH1.734e-7064.00Reticulon-like protein B6 OS=Arabidopsis thaliana ... [more]
RTNLB_ARATH3.862e-7063.82Reticulon-like protein B2 OS=Arabidopsis thaliana ... [more]
RTNLD_ARATH1.468e-6962.25Reticulon-like protein B4 OS=Arabidopsis thaliana ... [more]
RTNLC_ARATH1.623e-6864.18Reticulon-like protein B3 OS=Arabidopsis thaliana ... [more]
RTNLG_ARATH4.897e-5754.04Reticulon-like protein B7 OS=Arabidopsis thaliana ... [more]
RTNLH_ARATH2.787e-4445.08Reticulon-like protein B8 OS=Arabidopsis thaliana ... [more]
RTNLI_ARATH4.605e-3939.90Reticulon-like protein B9 OS=Arabidopsis thaliana ... [more]
RTNLJ_ARATH4.043e-2734.03Reticulon-like protein B10 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YK23FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260205 ID=DY260205; Name=DY260205; organism=Citrus clementina; type=EST; length=1028bp
GAAGGCGGATATTTATCCTTTATTTGGCAGAGAGCGGCCGGTTCACCAGG
TTTTCCGTGGTGGAAAGCCTGCTGATGTTTTTTTGTGGAGGAACAAGAAG
ATTTCAGCGGGTGTACTAGGTGGAGCCCCGGCTATCTGGGTCCTTTTCGA
GTTGTTTGAATACCACCTGCTTACTTTGGTCTGCCACACCTTAATTCTTG
CACTTGCAATCTTGTTCCTGTGGGCCAATGCCCATACCTTCATTAAGAAG
GCCCCACCCTGCATCCCTGAAGTTCATCTTCCTGAGGAGCCATTCCTGCA
GGTTGCTTCTGCCTTTAGGATTGAACTCAACCATGCTTTTGCAGTATTGC
GGAGTATTGCATCAGGAAGAGATTTGAAGAGTTTTCTCATGGCTATAGCT
GCCTTGTGGGTGCTGTCAGTTGTGGGGAGTTGGTGCAACTTCTTGACCTT
GTTTTATATAGCTTTGGTTTTGCTGCACATTGTGCCTGTTCTCTATGAGA
AGTATGAGGACAAGATTGATCCCTTAGCTGAGAAGGCAATGATTGAGATA
AAAAAACAATATGCAGTATTTGATGCCAAGGTTTTGAGTAAGATTCCCGT
CAAAGCCAAGAGGGTTTAAACCAGTGAAGCTAATTTATTTCTGGTGGGCA
TTTGGGTAGTGATGTGTTTTGCTGGCTGGTGATTCTATTCCATAACCCTG
GTATGCCCATTTCCATTGTCTTACCGACCAGCTATTTTCAAGTGTTTTAT
TTTTTCTTTGCCAATTGAATTTATTTTGGCATTTTATGGGGGTCCAATCT
AATTGTGTTTTCCTTTCCTGGCCCATGAGTAGCCTGAAAATACCCCACCA
TCCCAGGGATTTTGTCCTGGCTGGGTTCCATTTGGAAAAATACCCCGTTT
CCTGGACCCTCCTTTTGAACCCTTTCTTTGGAAGAATAAGGGGGCCCGAA
TTTTAAAAACCCCCACAAACTTTTGAACCCCCCCGATAAAAAGGCTTGAA
TGACCCCCCCCCTTCCTGGTTTGGCCCA
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