DY260208

Overview
NameDY260208
Unique NameDY260208
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1049
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1454 contig Ccv1_Contig1454:1..1049. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260208 vs. ExPASy Swiss-Prot
Match: LAG13_ARATH (LAG1 longevity assurance homolog 3 OS=Arabidopsis thaliana GN=At1g13580 PE=2 SV=2)

HSP 1 Score: 267.314 bits (682), Expect = 1.048e-70
Identity = 125/155 (80.65%), Postives = 142/155 (91.61%), Query Frame = 2
Query:    2 FGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFIPFVLSWILLRLIYYPFWILWSTSYEVILTLDKKKHPVDGPIYYYVFNTPLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVPSHSESDNEHED 466
            FGVSMGHH+AT+ILIVLSY+  F+RVGSVVLALHDASDVFLE+GKMSKY GAE IAS SFI FVLSWI+LRLIYYPFWILWSTSYEV+L LDK KHP++GPIYYY+FNT L+CLLVLHIYWWVL+YRMLVKQ+Q RG++SEDV S SE ++EHED
Sbjct:  154 FGVSMGHHIATLILIVLSYVCSFSRVGSVVLALHDASDVFLEVGKMSKYSGAERIASFSFILFVLSWIILRLIYYPFWILWSTSYEVVLELDKDKHPIEGPIYYYMFNTLLYCLLVLHIYWWVLMYRMLVKQIQDRGKLSEDVRSDSEGEDEHED 308          
BLAST of DY260208 vs. ExPASy Swiss-Prot
Match: LAG11_ARATH (LAG1 longevity assurance homolog 1 OS=Arabidopsis thaliana GN=LAG1 PE=1 SV=1)

HSP 1 Score: 251.906 bits (642), Expect = 4.557e-66
Identity = 118/155 (76.13%), Postives = 139/155 (89.68%), Query Frame = 2
Query:    2 FGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFIPFVLSWILLRLIYYPFWILWSTSYEVILTLDKKKHPVDGPIYYYVFNTPLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVPSHSESDNEHED 466
            FGVSMGHH+ T++LIVLSYI R  R GSV+LALHDASDVFLEIGKMSKY GAE +AS+SF+ F LSW++LRLIYYPFWILWSTSY++I+T+DK+KHP +GPI YY+FNT L+ LLVLHI+WWVLIYRMLVKQVQ RG++SEDV S SESD+EHED
Sbjct:  157 FGVSMGHHITTLVLIVLSYICRLTRAGSVILALHDASDVFLEIGKMSKYCGAESLASISFVLFALSWVVLRLIYYPFWILWSTSYQIIMTVDKEKHP-NGPILYYMFNTLLYFLLVLHIFWWVLIYRMLVKQVQDRGKLSEDVRSDSESDDEHED 310          
BLAST of DY260208 vs. ExPASy Swiss-Prot
Match: ASCL_SOLLC (ASC1-like protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 1.326e-65
Identity = 120/155 (77.42%), Postives = 138/155 (89.03%), Query Frame = 2
Query:    2 FGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFIPFVLSWILLRLIYYPFWILWSTSYEVILTLDKKKHPVDGPIYYYVFNTPLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVPSHSESDNEHED 466
            FGVSM HHVAT ILIVLSY  RFARVGSVVLA+HDASD+FLEIGKMSKY GAE +AS  ++   LSWI+LRLIYYPFW+LWSTSYEV+ TLDK+KH VDGPIYYY+FN+ LFCLLVLHIYWWVLIYRMLVKQ+QARG++S+DV   S+S++EHED
Sbjct:  153 FGVSMSHHVATAILIVLSYNIRFARVGSVVLAIHDASDIFLEIGKMSKYSGAEALASFRYL--CLSWIILRLIYYPFWVLWSTSYEVLQTLDKEKHKVDGPIYYYIFNSLLFCLLVLHIYWWVLIYRMLVKQIQARGQLSDDV--RSDSEDEHED 303          
BLAST of DY260208 vs. ExPASy Swiss-Prot
Match: ASCL1_ORYSJ (ASC1-like protein 1 OS=Oryza sativa subsp. japonica GN=Os02g0581300 PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 1.162e-61
Identity = 114/155 (73.55%), Postives = 135/155 (87.10%), Query Frame = 2
Query:    2 FGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFIPFVLSWILLRLIYYPFWILWSTSYEVILTLDKKKHPVDGPIYYYVFNTPLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVPSHSESDNEHED 466
            FGVSM HHVATV LIVLSY+FRFARVGSVVLA+HDASDVFLE+GKM+KY   + +A+++F+ FV+SW+LLRL Y+PFWIL STSYEV+LTLDKKKH  DGPIYYYVFN+ LF LLVLHIYWWVLIYRMLV+Q++ R  V +DV S SE ++EHED
Sbjct:  156 FGVSMSHHVATVALIVLSYVFRFARVGSVVLAIHDASDVFLEVGKMAKYSHCDLLANVAFLLFVVSWVLLRLTYFPFWILRSTSYEVLLTLDKKKHNFDGPIYYYVFNSLLFSLLVLHIYWWVLIYRMLVRQIKTR-NVGDDVRSDSEGEDEHED 309          
BLAST of DY260208 vs. ExPASy Swiss-Prot
Match: ASCL2_ORYSJ (ASC1-like protein 2 OS=Oryza sativa subsp. japonica GN=Os02g0728300 PE=3 SV=2)

HSP 1 Score: 220.32 bits (560), Expect = 1.469e-56
Identity = 103/145 (71.03%), Postives = 124/145 (85.52%), Query Frame = 2
Query:    2 FGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFIPFVLSWILLRLIYYPFWILWSTSYEVILTLDKKKHPVDGPIYYYVFNTPLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVPS 436
            FG+SM HHV +VILI LSYIFRFARVGS+VLA+HDASDVFLE+GK+SKY G + +A +SF+ FV SW +LRLIYYPFWILWSTSYEV+  LDKKKH  DGP++YYVFN  LF LLVL+IYWWVL+YRMLV+Q+ ++G V +DV S
Sbjct:  149 FGISMVHHVVSVILIALSYIFRFARVGSIVLAIHDASDVFLELGKISKYSGYQLLADVSFLIFVCSWAVLRLIYYPFWILWSTSYEVVPMLDKKKHKFDGPLHYYVFNCLLFSLLVLNIYWWVLMYRMLVEQILSKGHVGDDVRS 293          
BLAST of DY260208 vs. ExPASy Swiss-Prot
Match: ASC1_SOLLC (Protein ASC1 OS=Solanum lycopersicum GN=Asc-1 PE=2 SV=2)

HSP 1 Score: 172.94 bits (437), Expect = 2.690e-42
Identity = 84/155 (54.19%), Postives = 111/155 (71.61%), Query Frame = 2
Query:    2 FGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFIPFVLSWILLRLIYYPFWILWSTSYEVILTLDKKKHPVDGPIYYYVFNTPLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVPSHSESDNEHED 466
            F   + HHV TV LIVLSY++ FAR+GSVVLALHD SDVF+EI KMSKY G + IA + F  F L +  LR+I YPFWI+ ST YE++  LD +K    G I Y+VFN  L CLLVLH++W+ +I RM+  Q+ +RG +++DV   SESD++H+D
Sbjct:  154 FAAQIIHHVTTVSLIVLSYVYGFARIGSVVLALHDGSDVFMEIAKMSKYSGFDLIADIFFSLFALVFTSLRIICYPFWIIRSTCYELLYVLDIQKERTTGIILYFVFNALLICLLVLHLFWFKIILRMVKNQILSRGHITDDVREDSESDDDHKD 308          
BLAST of DY260208 vs. ExPASy Swiss-Prot
Match: LAG12_ARATH (LAG1 longevity assurance homolog 2 OS=Arabidopsis thaliana GN=LAG2 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.078e-38
Identity = 78/152 (51.32%), Postives = 105/152 (69.08%), Query Frame = 2
Query:    2 FGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFIPFVLSWILLRLIYYPFWILWSTSYEVILTLDKKKHPVDGPIYYYVFNTPLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVPSHSESDNE 457
            F V M HHV T+IL+  SY+  F R+G+++LALHDASDVF+E  K+ KY   E  AS+ F  F +SW+LLRLIY+PFWI+ +TS E++  LD      +G + YY FNT L  LLV HIYWW LI  M+V+ ++ RG+V ED+ S SE D++
Sbjct:  147 FAVMMSHHVITIILLSYSYLTSFFRIGAIILALHDASDVFMETAKIFKYSEKEFGASVCFALFAVSWLLLRLIYFPFWIIRATSIELLDYLDMTS--AEGTLMYYSFNTMLLMLLVFHIYWWYLICAMIVRLLKNRGKVGEDIRSDSEDDDD 296          
BLAST of DY260208 vs. ExPASy Swiss-Prot
Match: ASCL3_ORYSJ (ASC1-like protein 3 OS=Oryza sativa subsp. japonica GN=Os03g0264000 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 1.170e-37
Identity = 82/151 (54.30%), Postives = 105/151 (69.54%), Query Frame = 2
Query:    2 FGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFIPFVLSWILLRLIYYPFWILWSTSYEVILTLDK-KKHPVDGPIYYYVFNTPLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVPSHSESD 451
            F V M HHV T ILI  +Y+  F R+G+++LALHDASDVFLE  K+ KY   E  ASL F  F LSW+LLRLIY+PFWI+ ++SY+ I++L K +K P      YY+FNT L  LLV HIYWW LI  M++KQ+  +G+V EDV S SE +
Sbjct:  136 FAVMMSHHVVTSILIGYAYLTGFFRIGTIILALHDASDVFLETAKLCKYTEKELGASLFFGLFALSWLLLRLIYFPFWIIKTSSYQSIISLRKLEKFPT---TLYYIFNTMLLTLLVFHIYWWKLICLMIMKQLNNKGQVGEDVRSDSEDE 283          
BLAST of DY260208 vs. ExPASy Swiss-Prot
Match: LASS6_MOUSE (LAG1 longevity assurance homolog 6 OS=Mus musculus GN=Lass6 PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.216e-20
Identity = 58/156 (37.18%), Postives = 89/156 (57.05%), Query Frame = 2
Query:    2 FGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFIPFVLSWILLRLIYYPFWILWSTSYEVILTLDKKKHPVDGPI-YYYVFNTPLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVPSHSESDNEHED 466
            FG+   HH+AT+ LI  SY+   ARVG++VL LHD++D  LE  KM+ Y   + +  L F+ F + +I  RL  +P W+L +T +E           + GP   ++VFN  L  L  L+ +W  LI ++  K V ++G+VS+D  S  ES ++ ED
Sbjct:  205 FGIMFLHHLATIFLITFSYVNNMARVGTLVLCLHDSADALLEAAKMANYAKFQKMCDLLFVMFAVVFITTRLGIFPLWVLNTTLFE--------SWEIVGPYPSWWVFNLLLLLLQGLNCFWSYLIVKIACKTV-SKGKVSKDDRSDIESSSDDED 351          
BLAST of DY260208 vs. ExPASy Swiss-Prot
Match: LASS6_HUMAN (LAG1 longevity assurance homolog 6 OS=Homo sapiens GN=LASS6 PE=1 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.436e-19
Identity = 56/156 (35.90%), Postives = 88/156 (56.41%), Query Frame = 2
Query:    2 FGVSMGHHVATVILIVLSYIFRFARVGSVVLALHDASDVFLEIGKMSKYIGAEGIASLSFIPFVLSWILLRLIYYPFWILWSTSYEVILTLDKKKHPVDGPI-YYYVFNTPLFCLLVLHIYWWVLIYRMLVKQVQARGRVSEDVPSHSESDNEHED 466
            FG+   HH+ ++ LI  SY+   ARVG++VL LHD++D  LE  KM+ Y   + +  L F+ F + +I  RL  +P W+L +T +E           + GP   ++VFN  L  +  L+ +W  LI ++  K V +RG+VS+D  S  ES ++ ED
Sbjct:  205 FGIMFLHHLVSIFLITFSYVNNMARVGTLVLCLHDSADALLEAAKMANYAKFQKMCDLLFVMFAVVFITTRLGIFPLWVLNTTLFE--------SWEIVGPYPSWWVFNLLLLLVQGLNCFWSYLIVKIACKAV-SRGKVSKDDRSDIESSSDEED 351          
The following BLAST results are available for this feature:
BLAST of DY260208 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
LAG13_ARATH1.048e-7080.65LAG1 longevity assurance homolog 3 OS=Arabidopsis ... [more]
LAG11_ARATH4.557e-6676.13LAG1 longevity assurance homolog 1 OS=Arabidopsis ... [more]
ASCL_SOLLC1.326e-6577.42ASC1-like protein OS=Solanum lycopersicum PE=2 SV=... [more]
ASCL1_ORYSJ1.162e-6173.55ASC1-like protein 1 OS=Oryza sativa subsp. japonic... [more]
ASCL2_ORYSJ1.469e-5671.03ASC1-like protein 2 OS=Oryza sativa subsp. japonic... [more]
ASC1_SOLLC2.690e-4254.19Protein ASC1 OS=Solanum lycopersicum GN=Asc-1 PE=2... [more]
LAG12_ARATH3.078e-3851.32LAG1 longevity assurance homolog 2 OS=Arabidopsis ... [more]
ASCL3_ORYSJ1.170e-3754.30ASC1-like protein 3 OS=Oryza sativa subsp. japonic... [more]
LASS6_MOUSE2.216e-2037.18LAG1 longevity assurance homolog 6 OS=Mus musculus... [more]
LASS6_HUMAN1.436e-1935.90LAG1 longevity assurance homolog 6 OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YL03FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260208 ID=DY260208; Name=DY260208; organism=Citrus clementina; type=EST; length=1049bp
CTTTGGGGTGTCCATGGGCCATCATGTTGCCACTGTTATCCTCATTGTGC
TGTCATACATTTTTAGATTTGCTCGTGTTGGCTCAGTTGTTTTAGCACTT
CATGATGCCAGTGATGTGTTTTTGGAGATTGGGAAGATGTCCAAGTACAT
TGGCGCTGAAGGGATTGCTAGCTTGTCCTTTATTCCCTTTGTTTTGTCAT
GGATCTTACTCCGCCTTATTTACTACCCTTTCTGGATTCTCTGGAGTACA
AGCTATGAAGTCATCCTGACCTTGGACAAGAAAAAACATCCTGTGGATGG
ACCGATATACTACTATGTATTCAATACTCCACTATTTTGTTTGCTTGTTC
TTCACATTTACTGGTGGGTATTGATATACCGGATGCTTGTTAAACAAGTC
CAAGCAAGGGGAAGAGTTAGTGAAGATGTTCCATCACACTCTGAGAGTGA
CAATGAACACGAAGATTGATCCGGGAAACAATAATTACCACCAGTGCATG
ACTCCCTCACGGTAGTATGAGGTTTTTGGAAACCATTTTGACCTCCCTGG
ATGGCAACCAATTGCCCCGTTTTGTTTTAAATTGAATTAAATCCAAACCA
CTAGGCCTTCCAAACCCAATGGTTAGAACCCCTACTTCCCAATTTTGACG
TCCGGGGTCCCACCCCCCATTTGAGTGAAGGCCCTCCTCCCCCTTTCCAA
AGTGAATGGCACACACCTCCCCCCCACAATTAAAAAGGGCAAAAATCCGG
GGCGGGCTTCCCCAAAAATTGATGGAAAACCAAATTTCACGAAAAACCCG
GATTGGAAAAACCCCCCCTGACACCCCCCCGGAAAAAGAAATTCCCCCCC
CAAACCAAAAATCCTTTTCAAAAAACAAAAAATTTCTTTTTCCTCCCAAA
AAACAAAAAAAAAACCCCCCCCCTTCCTTTCAACAACCTCCGTCATAAAA
AAAAGCATTTGCTTCTCCCCTCTTTGCGCCCCCGCAACCCGCCCACCCAT
CCTCCAAAAACAAAATCCTTTTCCCCCCCCCCCCCCCCAAAAACCCCCC
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