DY260214

Overview
NameDY260214
Unique NameDY260214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1020
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260214 vs. ExPASy Swiss-Prot
Match: PSMD4_ARATH (26S proteasome non-ATPase regulatory subunit 4 OS=Arabidopsis thaliana GN=MBP1 PE=1 SV=1)

HSP 1 Score: 348.206 bits (892), Expect = 4.470e-95
Identity = 179/264 (67.80%), Postives = 203/264 (76.89%), Query Frame = 2
Query:   29 MVLEATLICIDNSEWMRNGYYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGE-DDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPHPDPELAPCSQVSMXXXXXXXXXXXXXXTEEAGQKGKTGGTA 817
            MVLEAT+ICIDNSEWMRNG Y+PSR QAQTEA NL+CGAKTQ NPENTVG++TMAGKGVRVL TPTSDLGKILACMHGL++GGE+NL A IQ+AQLALKHRQNK Q+QRIIVF GSPIK+EKK LE++G++LKKNSV+LDIVNFGE DDE   +KLEALL AVNNND SH+VHVP G NALSDVLLSTP+FTGD                     ++FGVDP+ DPELA   +VSM               +EAGQK K G TA
Sbjct:    1 MVLEATMICIDNSEWMRNGDYSPSRLQAQTEAVNLLCGAKTQSNPENTVGILTMAGKGVRVLTTPTSDLGKILACMHGLDVGGEINLTAAIQIAQLALKHRQNKNQRQRIIVFAGSPIKYEKKALEIVGKRLKKNSVSLDIVNFGEDDDEEKPQKLEALLTAVNNNDGSHIVHVPSGANALSDVLLSTPVFTGD--EGASGYVSAAAAAAAAGGDFDFGVDPNIDPELALALRVSMEEERARQEAAAKKAADEAGQKDKDGDTA 262          
BLAST of DY260214 vs. ExPASy Swiss-Prot
Match: PSMD4_DICDI (26S proteasome non-ATPase regulatory subunit 4 OS=Dictyostelium discoideum GN=psmD4 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 5.707e-58
Identity = 131/303 (43.23%), Postives = 183/303 (60.40%), Query Frame = 2
Query:   29 MVLEATLICIDNSEWMRNGYYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIF-TGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPHPDPELAPCSQVSMXXXXXXXXXXXXXXTEEAGQKGKTGGTAIQPPGGTND*TRTVFPPSEANVKKKNYKAGPGVCHREAL 934
            M LEAT++C+DNSEWMRNG + PSR +AQ +A NLIC +KTQ NPE+ V +M+MAGK   VLVT T +L KIL+    L+I G+++ +  +Q+AQLAL+HRQN  Q  RII FVGSP+K  K+ L  + ++LKKN VA+DI+NFGE  E N++KLEA +  VNNND SHL+ VPPGP+ LSD++L +PI  +G G+                    EF ++   DP+LA   ++S+               E+  Q+ +         G TN  T T   P+E+N+   N++  P +    AL
Sbjct:    1 MTLEATIVCLDNSEWMRNGDFTPSRSEAQKDAVNLICASKTQSNPESAVSIMSMAGKKPEVLVTLTQELSKILSGAQELKINGKIDFSTTMQIAQLALRHRQNNHQHPRIIAFVGSPLKETKEELIQLAKRLKKNGVAVDIINFGEVTE-NSDKLEAFINDVNNNDESHLLTVPPGPHILSDIILQSPIVESGSGQFGS-----------------EF-INADTDPDLAMALKLSL-------------EEEKQRQERERKAREEANGGSTNSGTTTTTAPTESNM-DVNFEDDPELAEALAL 270          
BLAST of DY260214 vs. ExPASy Swiss-Prot
Match: PSMD4_MOUSE (26S proteasome non-ATPase regulatory subunit 4 OS=Mus musculus GN=Psmd4 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.114e-53
Identity = 114/237 (48.10%), Postives = 156/237 (65.82%), Query Frame = 2
Query:   29 MVLEATLICIDNSEWMRNGYYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPHPDPELAPCSQVSM 733
            MVLE+T++C+DNSE+MRNG + P+R QAQ +A N++C +KT+ NPEN VG++T+A     VL T T D G+IL+ +H ++  G++    GI+VA LALKHRQ K  + RII FVGSP++  +K L  + ++LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP +L+D L+S+PI  G+G                    +EFGVDP  DPELA   +VSM
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM 224          
BLAST of DY260214 vs. ExPASy Swiss-Prot
Match: PSMD4_HUMAN (26S proteasome non-ATPase regulatory subunit 4 OS=Homo sapiens GN=PSMD4 PE=1 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.114e-53
Identity = 114/237 (48.10%), Postives = 156/237 (65.82%), Query Frame = 2
Query:   29 MVLEATLICIDNSEWMRNGYYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPHPDPELAPCSQVSM 733
            MVLE+T++C+DNSE+MRNG + P+R QAQ +A N++C +KT+ NPEN VG++T+A     VL T T D G+IL+ +H ++  G++    GI+VA LALKHRQ K  + RII FVGSP++  +K L  + ++LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP +L+D L+S+PI  G+G                    +EFGVDP  DPELA   +VSM
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM 224          
BLAST of DY260214 vs. ExPASy Swiss-Prot
Match: PSMD4_BOVIN (26S proteasome non-ATPase regulatory subunit 4 OS=Bos taurus GN=PSMD4 PE=2 SV=1)

HSP 1 Score: 210.69 bits (535), Expect = 1.114e-53
Identity = 114/237 (48.10%), Postives = 156/237 (65.82%), Query Frame = 2
Query:   29 MVLEATLICIDNSEWMRNGYYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPHPDPELAPCSQVSM 733
            MVLE+T++C+DNSE+MRNG + P+R QAQ +A N++C +KT+ NPEN VG++T+A     VL T T D G+IL+ +H ++  G++    GI+VA LALKHRQ K  + RII FVGSP++  +K L  + ++LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP +L+D L+S+PI  G+G                    +EFGVDP  DPELA   +VSM
Sbjct:    1 MVLESTMVCVDNSEYMRNGDFLPTRLQAQQDAVNIVCHSKTRSNPENNVGLITLAND-CEVLTTLTPDTGRILSKLHTVQPKGKITFCTGIRVAHLALKHRQGKNHKMRIIAFVGSPVEDNEKDLVKLAKRLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISSPILAGEG----------GAMLGLGASDFEFGVDPSADPELALALRVSM 224          
BLAST of DY260214 vs. ExPASy Swiss-Prot
Match: RPN10_YEAST (26S proteasome regulatory subunit RPN10 OS=Saccharomyces cerevisiae GN=RPN10 PE=1 SV=3)

HSP 1 Score: 201.445 bits (511), Expect = 6.758e-51
Identity = 111/237 (46.84%), Postives = 152/237 (64.14%), Query Frame = 2
Query:   29 MVLEATLICIDNSEWMRNGYYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNN--NDSSHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPHPDPELAPCSQVSM 733
            MVLEAT++ IDNSE+ RNG +  +RF+AQ ++   I  AK   NPENTVG+++ AG   RVL T T++ GKILA +H  +I G+L++A  +Q+AQL LKHRQNK Q QRI+ FV SPI   +  L  + + LKKN+VA+DI+NFGE ++ NTE L+  +AAVNN   ++SHL+ V PGP  L + + S+PI   +G                     +FGVDP  DPELA   ++SM
Sbjct:    1 MVLEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGANPRVLSTFTAEFGKILAGLHDTQIEGKLHMATALQIAQLTLKHRQNKVQHQRIVAFVCSPISDSRDELIRLAKTLKKNNVAVDIINFGEIEQ-NTELLDEFIAAVNNPQEETSHLLTVTPGPRLLYENIASSPIILEEGSSGMGAFGGSGGDSDANGTFMDFGVDPSMDPELAMALRLSM 236          
BLAST of DY260214 vs. ExPASy Swiss-Prot
Match: RPN10_SCHPO (26S proteasome regulatory subunit rpn10 OS=Schizosaccharomyces pombe GN=rpn10 PE=1 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 6.325e-49
Identity = 106/235 (45.11%), Postives = 144/235 (61.28%), Query Frame = 2
Query:   29 MVLEATLICIDNSEWMRNGYYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNNDSSHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPHPDPELAPCSQVSM 733
            MVLEAT+I IDNSEWM NG Y P+RF+AQ +  ++I   K   NPEN  G+MT+     +VL T T D GK L+ MH L + G      GIQ+AQLALKHR+NK Q+QRI+ FVGSPI  ++K L  + +++KKN+VA+DI++ GE    N   L+  + A N++DS HLV +PP P  LSD++  +PI  G                      +E+GVDP+ D ELA   ++SM
Sbjct:    1 MVLEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNSPQVLSTLTRDYGKFLSAMHDLPVRGNAKFGDGIQIAQLALKHRENKIQRQRIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIHIGELQ--NESALQHFIDAANSSDSCHLVSIPPSPQLLSDLVNQSPIGQG---------------VVASQNQFEYGVDPNLDVELALALELSM 218          
BLAST of DY260214 vs. ExPASy Swiss-Prot
Match: PSMD4_DROME (26S proteasome non-ATPase regulatory subunit 4 OS=Drosophila melanogaster GN=Pros54 PE=1 SV=2)

HSP 1 Score: 193.356 bits (490), Expect = 1.840e-48
Identity = 113/237 (47.68%), Postives = 146/237 (61.60%), Query Frame = 2
Query:   29 MVLEATLICIDNSEWMRNGYYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPHPDPELAPCSQVSM 733
            MVLE+T+IC DNS++ RNG Y P+R   Q +  NL+C  K + NPEN VG+MT++   V VL T TSD G+I + MH ++  GE+NL  GI++A L LKHRQ K  + RI+VFVGSPI HE+  L    ++LKK  V +DIV+FG D   N E L A + A+N  D   SHLV VP G + LSD LLS+PI  G+                     +EFGVDP+ DPELA   +VSM
Sbjct:    1 MVLESTMICFDNSDFQRNGDYFPTRLIVQRDGINLVCLTKLRSNPENNVGLMTLSNT-VEVLATLTSDAGRIFSKMHLVQPKGEINLLTGIRIAHLVLKHRQGKNHKMRIVVFVGSPINHEEGDLVKQAKRLKKEKVNVDIVSFG-DHGNNNEILTAFINALNGKDGTGSHLVSVPRG-SVLSDALLSSPIIQGE---------DGMGGAGLGGNVFEFGVDPNEDPELALALRVSM 225          
BLAST of DY260214 vs. ExPASy Swiss-Prot
Match: PIPSL_HUMAN (Putative PIP5K1A and PSMD4-like protein OS=Homo sapiens GN=PIPSL PE=5 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 2.106e-44
Identity = 104/235 (44.26%), Postives = 141/235 (60.00%), Query Frame = 2
Query:   35 LEATLICIDNSEWMRNGYYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPHPDPELAPCSQVSM 733
            L+     +DNSE+M NG + P+R QAQ +A N +C +KT+ NPEN VG++T+      VL T T D G+IL+ +H ++  G++    GI VA LALKHRQ    + RII FVG+P++  +K L  + + LKK  V +DI+NFGE +E NTEKL A +  +N  D   SHLV VPPGP +L+D L+S PI  G+G                    +EFGVDP  DPELA   +V M
Sbjct:  488 LQMLTTSVDNSEYMGNGDFLPTRLQAQQDAVNTVCHSKTRSNPENNVGLITL-DNDCEVLTTLTPDTGRILSKLHTVQPKGKITFCMGIHVAHLALKHRQGNNHKIRIIAFVGNPVEDNEKNLVKLAKCLKKEKVNVDIINFGE-EEVNTEKLTAFVNTLNGKDGTGSHLVTVPPGP-SLADALISFPILAGEG----------GAMMGLGASDFEFGVDPSADPELALVLRVFM 709          
BLAST of DY260214 vs. ExPASy Swiss-Prot
Match: PSMD4_SCHMA (26S proteasome non-ATPase regulatory subunit 4 OS=Schistosoma mansoni PE=2 SV=2)

HSP 1 Score: 167.548 bits (423), Expect = 1.081e-40
Identity = 95/237 (40.08%), Postives = 141/237 (59.49%), Query Frame = 2
Query:   29 MVLEATLICIDNSEWMRNGYYAPSRFQAQTEAANLICGAKTQLNPENTVGVMTMAGKGVRVLVTPTSDLGKILACMHGLEIGGELNLAAGIQVAQLALKHRQNKKQQQRIIVFVGSPIKHEKKVLEMIGRKLKKNSVALDIVNFGEDDEGNTEKLEALLAAVNNND--SSHLVHVPPGPNALSDVLLSTPIFTGDGEXXXXXXXXXXXXXXXXXXXYEFGVDPHPDPELAPCSQVSM 733
            M  EAT+I +DNS++MRNG + P+R QAQ +A  LIC +K Q NPENT+G++++A     VL T T+D+ KI   +H +E  G +   + I++A LAL+HRQ + Q+ RI+ F+GSPI  ++K L  + ++LKK  V +DI+NFGE +E N +KL   +  +N  D   SHL+ V PG   L D L+++P+  G+                      EFG+D   DP+L    +VSM
Sbjct:    1 MSQEATIIAVDNSDYMRNGDFFPTRLQAQNDAVGLICQSKRQRNPENTIGLLSLAN--TEVLCTLTNDVSKIYNRLHLVEPKGRIIFCSSIRIAHLALRHRQLRHQKMRIVCFIGSPILEDEKELTRLAKRLKKEKVNVDIINFGE-NETNEQKLSEFIDTLNGKDGTGSHLISVAPG-TVLHDTLMTSPVVAGE----------DGSGMAGAGLGLEFGLDGAEDPDLLYALRVSM 223          
The following BLAST results are available for this feature:
BLAST of DY260214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
PSMD4_ARATH4.470e-9567.8026S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_DICDI5.707e-5843.2326S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_MOUSE1.114e-5348.1026S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_HUMAN1.114e-5348.1026S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PSMD4_BOVIN1.114e-5348.1026S proteasome non-ATPase regulatory subunit 4 OS=... [more]
RPN10_YEAST6.758e-5146.8426S proteasome regulatory subunit RPN10 OS=Sacchar... [more]
RPN10_SCHPO6.325e-4945.1126S proteasome regulatory subunit rpn10 OS=Schizos... [more]
PSMD4_DROME1.840e-4847.6826S proteasome non-ATPase regulatory subunit 4 OS=... [more]
PIPSL_HUMAN2.106e-4444.26Putative PIP5K1A and PSMD4-like protein OS=Homo sa... [more]
PSMD4_SCHMA1.081e-4040.0826S proteasome non-ATPase regulatory subunit 4 OS=... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YL13FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260214 ID=DY260214; Name=DY260214; organism=Citrus clementina; type=EST; length=1020bp
TGTTTCTGATCTTCAAGAGTAGATAGCCATGGTTCTCGAGGCAACGTTGA
TCTGTATTGATAATTCTGAGTGGATGCGTAACGGCTATTACGCTCCTAGT
AGATTCCAAGCTCAAACTGAAGCTGCTAATCTTATTTGCGGAGCCAAAAC
TCAGTTAAATCCTGAGAATACCGTAGGTGTTATGACAATGGCAGGGAAAG
GGGTTCGTGTTTTGGTCACTCCTACTAGTGATCTTGGCAAGATCTTGGCT
TGCATGCACGGTTTAGAAATAGGCGGTGAGTTGAATCTTGCTGCTGGGAT
CCAGGTGGCTCAATTGGCTCTAAAGCATCGCCAGAACAAAAAGCAGCAAC
AAAGGATTATTGTCTTCGTTGGAAGTCCCATCAAGCATGAAAAGAAAGTG
CTGGAGATGATTGGCAGGAAGTTGAAAAAGAATAGTGTAGCACTTGACAT
TGTCAACTTTGGTGAAGACGATGAGGGGAATACGGAGAAGCTTGAAGCAC
TTCTTGCTGCTGTGAACAACAATGATAGTAGCCACCTTGTTCACGTTCCT
CCTGGTCCAAATGCCCTTTCTGATGTGCTTCTTAGTACGCCTATCTTCAC
TGGGGATGGTGAGGGAGGGAGTGGTTTTGCAGCCGCTGCCGCTGCTGCTG
CAGCCAGTGGTGCTTCTGGTTATGAATTTGGGGTGGACCCCCACCCAGAT
CCTGAACTGGCCCCTTGCTCCCAAGTTTCAATGGAAGAGGAGAAAGCCAA
ACAAGAAGCAGCCCCCAAGAGAGCCACCGAGGAAGCCGGCCAAAAAGGAA
AAACAGGGGGAACCGCCATCCAGCCTCCAGGAGGTACCAATGACTGAACC
AGAACAGTGTTCCCCCCTTCTGAAGCCAATGTAAAAAAAAAGAACTACAA
AGCTGGACCAGGGGTTTGCCACCGGGAGGCCCTTTGCCATTGCCCTCCAA
CTCCCTAATTTTTCCCCCCGGGGCCAAAAAACCAAAAATTTCCCAAAGTA
ACCCCGAAAATGGACCCCAA
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