DY260216

Overview
NameDY260216
Unique NameDY260216
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1074
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260216 vs. ExPASy Swiss-Prot
Match: PUB21_ARATH (U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 3.661e-18
Identity = 64/200 (32.00%), Postives = 102/200 (51.00%), Query Frame = 3
Query:  159 ETGASLIEKDPVTTTPRNGITYDRVNILIENERIIPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLVENVSVLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFNLIEEPIRPTATKA 758
            E G+ LI++ P   TPR                 +P+   EV EI+ K+ +A    D   C  ++ KIK+   ESE N+ C+ +N+   VL   F+ FS     +   +L EILS L  +FP+  E ++ L SA+S  C+   L S D S R+NA  ++ E++S   D+ +V+  +   G  EAL  LI + +  ++TK+
Sbjct:  100 EKGSPLIQRIP---TPR-----------------VPLMPCEVYEISRKLSSATRRGDYEKCGVIIEKIKKLGDESEKNRKCVNENSVGWVLCDCFDKFSGD--EKLTFMLNEILSLLTWMFPIGLEGISKLASATSFRCVAGLLKSTDDSVRQNAAFIMKEILS--LDETRVHSFAVENGVAEALVKLIRDSVSSSSTKS 275          
BLAST of DY260216 vs. ExPASy Swiss-Prot
Match: PUB20_ARATH (U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.298e-12
Identity = 50/156 (32.05%), Postives = 80/156 (51.28%), Query Frame = 3
Query:  261 IPVCSVEVLEINSKIKTACETQDQVGCKDLVAKIKEWAKESESNKSCIVDNAAVSVLAAAFESFSKTCLVENVS-VLEEILSTLILLFPLEGEALTHLGSASSMGCMIWFLNSGDLSRRRNAVLLLTELVSSDSDQRKVNVLSENEGAIEALFNLI 725
            +PV S +V EI  ++  A    D   C ++V K+    KESE N+ C+ +N A  VL   F++FS+     N S +LEE +S L  + P+  E  + L + SS   ++  L +GD    +NA  L+ EL+  + +   V+ L++  G  EA    I
Sbjct:  116 VPVTSHQVSEICERLSAATRRGDYAACMEMVTKMTRLGKESERNRKCVKENGAGLVLCVCFDAFSENA---NASLLLEETVSVLTWMLPIGLEGQSKLTTTSSFNRLVELLRNGD----QNAAFLIKELL--ELNVTHVHALTKINGVQEAFMKSI 262          
The following BLAST results are available for this feature:
BLAST of DY260216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
PUB21_ARATH3.661e-1832.00U-box domain-containing protein 21 OS=Arabidopsis ... [more]
PUB20_ARATH2.298e-1232.05U-box domain-containing protein 20 OS=Arabidopsis ... [more]
back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YL15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260216 ID=DY260216; Name=DY260216; organism=Citrus clementina; type=EST; length=1074bp
GACACAGAACAATATTACTTTCTTTGCATCGATCAAACTTCCCCAAATAC
GTCCTTTGATTGTTCAAGAATTAAATCTTGCACGGAATAACAATGATTCG
TTCATGGAGAAGACTAAGAGCCGGCCGGCATGCCAGGAAGGAGCAGCCGG
CCCGTAGAGAAACCGGCGCCAGCTTGATAGAAAAAGATCCGGTGACGACG
ACCCCACGAAATGGGATTACGTATGATCGAGTGAATATTCTGATTGAGAA
TGAGAGAATAATTCCGGTGTGTTCGGTTGAGGTTTTGGAAATCAATTCTA
AGATTAAGACGGCTTGTGAAACACAGGATCAAGTTGGGTGCAAAGATTTG
GTGGCAAAGATCAAGGAGTGGGCCAAGGAGAGTGAGAGCAACAAGAGTTG
CATTGTGGATAACGCAGCTGTAAGTGTTTTGGCAGCGGCGTTTGAATCAT
TTTCGAAAACATGTTTGGTTGAAAACGTTTCCGTTTTGGAGGAAATATTG
TCAACTTTGATTTTGTTGTTTCCTCTTGAGGGCGAGGCTCTGACTCATTT
GGGATCAGCTTCGTCTATGGGTTGCATGATTTGGTTCTTGAATAGCGGAG
ATTTGTCGAGGAGAAGAAACGCCGTGTTATTGTTGACAGAGCTCGTTTCT
TCTGATTCTGATCAAAGAAAAGTAAACGTGTTATCGGAGAATGAAGGTGC
CATTGAAGCATTATTTAACCTGATAGAAGAGCCCATCCGCCCTACTGCCA
CTAAAGCCTGCTTTGGTCCTCCTCCATCCTACCATCGCCTCCTCAGCTTC
AGTAAATGAGAAGCTAAAACAAAAATTTGTCCACCTGGGGTTGGTTTCCT
TGCCGCCCGAAAATGCTTGTTGAAGCCCCAAAAACCCTATGCAAAAAAGG
CTTTGAATGTTCCTGAAGGGAATTTGCCCCCCCCGATTGGGGGAAAAAAA
AATGCCCACCATAAACCCTTTACCACGCCCCGTTGGTATGAAAAAAATTC
CCCCCCCGTGTTCCGCAAATTGGCCAAACAAAATTTTCCCGGCTCCCCAT
TCCTTTGGGAACCCAAGCCACAAA
back to top