DY260224

Overview
NameDY260224
Unique NameDY260224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length775
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig9871 contig Ccv1_Contig9871:47..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS172_ARATH (40S ribosomal protein S17-2 OS=Arabidopsis thaliana GN=RPS17B PE=2 SV=3)

HSP 1 Score: 227.254 bits (578), Expect = 7.537e-59
Identity = 116/128 (90.62%), Postives = 121/128 (94.53%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMIAP 450
            MGRV TKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGF THLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD SG+  VEPQ  +AP
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTSGISAVEPQQAMAP 128          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS173_ARATH (40S ribosomal protein S17-3 OS=Arabidopsis thaliana GN=RPS17C PE=2 SV=3)

HSP 1 Score: 225.713 bits (574), Expect = 2.193e-58
Identity = 114/131 (87.02%), Postives = 123/131 (93.89%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMIAPPVF 459
            MGRV TKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGF THLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIK D++KVDKETL+MLA+LGMSDI+G+ +VE Q  +AP VF
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKIDDVKVDKETLEMLASLGMSDIAGISQVETQQAMAPAVF 131          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS174_ARATH (40S ribosomal protein S17-4 OS=Arabidopsis thaliana GN=RPS17D PE=2 SV=3)

HSP 1 Score: 225.328 bits (573), Expect = 2.864e-58
Identity = 115/128 (89.84%), Postives = 120/128 (93.75%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMIAP 450
            MGRV TKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGF THLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  VEPQ  +AP
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTPGISAVEPQQAMAP 128          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS171_ARATH (40S ribosomal protein S17-1 OS=Arabidopsis thaliana GN=RPS17A PE=1 SV=3)

HSP 1 Score: 224.172 bits (570), Expect = 6.380e-58
Identity = 116/132 (87.88%), Postives = 122/132 (92.42%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEPQSMIAP-PVF 459
            MGRV TKTVKKSSRQVIE+YYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGF THLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETL+MLA+LGMSD  G+  V+PQ  +AP P F
Sbjct:    1 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLEMLASLGMSDTLGISAVDPQQAMAPIPAF 132          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_SOLLC (40S ribosomal protein S17 OS=Solanum lycopersicum GN=RPS17 PE=2 SV=3)

HSP 1 Score: 219.164 bits (557), Expect = 2.052e-56
Identity = 114/133 (85.71%), Postives = 123/133 (92.48%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVE--VEPQSMIAPPVF 459
            MGRV TKTVKKSSRQVIERYYS+MTLDFHTNKKILEEVAIIPSKRLRNKIAGF THLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTD I+VDKETLDML+ALGMSD+ G+V+   EPQ++ A P +
Sbjct:    1 MGRVRTKTVKKSSRQVIERYYSKMTLDFHTNKKILEEVAIIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMSDLPGVVKQAAEPQAVAALPSY 133          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17B_SCHPO (40S ribosomal protein S17-B OS=Schizosaccharomyces pombe GN=rps17b PE=1 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.292e-38
Identity = 79/118 (66.95%), Postives = 97/118 (82.20%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLV 420
            MGRV TKT K++SR VIE+YY R+TLDF TNK+I++EVAII SKRLRNKIAG+ THLMKRIQ+GPVRGIS KLQEEERER+  +VP+ S ++ D+I VD++T DML ALG   I  +V
Sbjct:    1 MGRVRTKTTKRASRVVIEKYYPRLTLDFQTNKRIVDEVAIIASKRLRNKIAGYTTHLMKRIQRGPVRGISFKLQEEERERKDQYVPEVSELEKDKINVDQDTKDMLKALGYDSIPTVV 118          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_THEPA (40S ribosomal protein S17 OS=Theileria parva GN=RPS17 PE=3 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 5.615e-38
Identity = 74/112 (66.07%), Postives = 97/112 (86.61%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 402
            MGRV TKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_THEAN (40S ribosomal protein S17 OS=Theileria annulata GN=RPS17 PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 5.615e-38
Identity = 74/112 (66.07%), Postives = 97/112 (86.61%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMS 402
            MGRV TKTVK+++RQ++E+YY ++ LDF  NKK+ EEVA+IPSKR+RNK+AGF THLM+RIQKGPVRGISLKLQEEERERRMD++P++S ++   I+VD++T DML  L +S
Sbjct:    1 MGRVRTKTVKRAARQIVEKYYGKLGLDFQYNKKVAEEVALIPSKRMRNKVAGFITHLMRRIQKGPVRGISLKLQEEERERRMDYIPEKSELEVPVIQVDQDTADMLNFLKIS 112          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_BOVIN (40S ribosomal protein S17 OS=Bos taurus GN=RPS17 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 7.334e-38
Identity = 76/122 (62.30%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 432
            MGRV TKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLDNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
BLAST of DY260224 vs. ExPASy Swiss-Prot
Match: RS17_PIG (40S ribosomal protein S17 OS=Sus scrofa GN=RPS17 PE=2 SV=3)

HSP 1 Score: 157.147 bits (396), Expect = 9.578e-38
Identity = 76/122 (62.30%), Postives = 99/122 (81.15%), Query Frame = 1
Query:   67 MGRVPTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVAIIPSKRLRNKIAGFPTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDESAIKTDEIKVDKETLDMLAALGMSDISGLVEVEP 432
            MGRV TKTVKK++R +IE+YY+R+  DFHTNK++ EE+AIIPSK+LRNKIAG+ THLMKRIQ+GPVRGIS+KLQEEERERR ++VP+ SA+  + I+VD +T +ML  L    +S L   +P
Sbjct:    1 MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKIAGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDPDTKEMLKLLDFGSLSNLQVTQP 122          
The following BLAST results are available for this feature:
BLAST of DY260224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS172_ARATH7.537e-5990.6340S ribosomal protein S17-2 OS=Arabidopsis thalian... [more]
RS173_ARATH2.193e-5887.0240S ribosomal protein S17-3 OS=Arabidopsis thalian... [more]
RS174_ARATH2.864e-5889.8440S ribosomal protein S17-4 OS=Arabidopsis thalian... [more]
RS171_ARATH6.380e-5887.8840S ribosomal protein S17-1 OS=Arabidopsis thalian... [more]
RS17_SOLLC2.052e-5685.7140S ribosomal protein S17 OS=Solanum lycopersicum ... [more]
RS17B_SCHPO3.292e-3866.9540S ribosomal protein S17-B OS=Schizosaccharomyces... [more]
RS17_THEPA5.615e-3866.0740S ribosomal protein S17 OS=Theileria parva GN=RP... [more]
RS17_THEAN5.615e-3866.0740S ribosomal protein S17 OS=Theileria annulata GN... [more]
RS17_BOVIN7.334e-3862.3040S ribosomal protein S17 OS=Bos taurus GN=RPS17 P... [more]
RS17_PIG9.578e-3862.3040S ribosomal protein S17 OS=Sus scrofa GN=RPS17 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionKN0AAP11YM07FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260224 ID=DY260224; Name=DY260224; organism=Citrus clementina; type=EST; length=775bp
CTCAAGCTCTTCTGCTTCACCGTCTTTGTCTTCTTCAAGACAGCAGCCGC
CGCTTCTTAAACTGAAATGGGTCGTGTTCCTACCAAGACCGTGAAGAAGT
CCTCTCGCCAGGTGATTGAGAGGTACTACTCAAGAATGACACTGGACTTC
CATACCAACAAGAAGATTTTGGAGGAGGTTGCTATCATCCCCTCGAAGAG
GCTGCGTAACAAAATTGCTGGGTTCCCAACCCATTTGATGAAGAGGATTC
AGAAGGGTCCAGTTCGTGGAATCTCCCTTAAATTGCAGGAAGAGGAGCGC
GAACGCCGCATGGACTTTGTGCCTGATGAGTCAGCTATTAAGACTGATGA
AATTAAGGTTGACAAGGAAACCTTGGATATGCTTGCTGCTCTTGGCATGT
CTGACATTTCTGGGCTTGTTGAAGTTGAGCCACAGAGCATGATTGCTCCT
CCAGTTTTTGGTCGGGGTGGTGGCAGGAGGTACTGAGTTAATTGAGGCTT
TGTGGCTCAATCAAGAATGAGAAGTTTAGGTTCTTATTAATCAGTACTTC
TTGTGTTTGTTATGAATGCTTTTGTGACTAGTTTTCTTTACTATTTTAAG
AAGGGTGTTTAGTTAAAACTTGAACTCTGGCATCATACTTAGTTGATTTA
ATGGACTTGTTTTGTCTTTTCCTTTTATTTGTTTTACTGGGACGCAACCT
ACTGAAGTTATAACGCCCATTAGTTTTGGCAAAAAAAAAAAAAAAAAAAA
AAAAAAACCCACCTTTCCTGTACAA
back to top