DY260235

Overview
NameDY260235
Unique NameDY260235
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1038
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2M_BETVU (NADH-ubiquinone oxidoreductase chain 2 OS=Beta vulgaris GN=ND2 PE=3 SV=2)

HSP 1 Score: 285.804 bits (730), Expect = 2.798e-76
Identity = 159/216 (73.61%), Postives = 172/216 (79.63%), Query Frame = 3
Query:   51 EGIPSLLIGIFIYALMTIDAFAIVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPK--AVLRAPDT*FTQSVAT--RMGMHATKDRVESD---TSTVYSISLYESTITTRDEPWFGELKLALGVIGLPVTARDRILRCSPPIVETTQAGPGPGLDSER 677
            EGI SLLIG+FIYA M    FAIV ALRQTRVKYIA LG LAKTNPISAITFS+TMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLA VGVVTSVIGCWAAGRLPRVSQFG  +  +V R      T+S+    R G      ++ S      +VYSISLYESTITTRDEPWFGE +LALGVIGLPVTA DRILRCSPP+V TT+A  GPGL+SER
Sbjct:  308 EGIQSLLIGLFIYASMDDRCFAIVSALRQTRVKYIADLGALAKTNPISAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLAPVGVVTSVIGCWAAGRLPRVSQFGDRRQFSVHR------TRSLPNQLRHGWECMLRKIGSSLIHQPSVYSISLYESTITTRDEPWFGEFELALGVIGLPVTAHDRILRCSPPVVGTTRA--GPGLNSER 515          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2M_ARATH (NADH-ubiquinone oxidoreductase chain 2 OS=Arabidopsis thaliana GN=ND2 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 1.071e-51
Identity = 106/130 (81.54%), Postives = 111/130 (85.38%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPK 392
            IGH  YI  GF CGTIEGI SLLIGIFIYALMT+DAFAIVLALRQTRVKYIA LG LAKTNPI AITFS+TMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLA VGVVTSVIGC+   RL +   F  P+
Sbjct:  324 IGHVGYICIGFSCGTIEGIQSLLIGIFIYALMTMDAFAIVLALRQTRVKYIADLGALAKTNPILAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLALVGVVTSVIGCFYYIRLVKRMFFDTPR 453          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2M_OENBE (NADH-ubiquinone oxidoreductase chain 2 OS=Oenothera bertiana GN=ND2 PE=2 SV=2)

HSP 1 Score: 202.601 bits (514), Expect = 3.116e-51
Identity = 105/130 (80.77%), Postives = 111/130 (85.38%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPK 392
            IGH  YI  GF CGTIEGI SLLIG+FIYAL TI+AFAIVLALRQTRVKYIA LG LAKTNPI AITFS+TMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGC+   RL +   F  P+
Sbjct:  313 IGHVGYICIGFSCGTIEGIQSLLIGLFIYALTTINAFAIVLALRQTRVKYIADLGALAKTNPILAITFSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCFYYIRLVKRMFFDTPR 442          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NU2M_MARPO (NADH-ubiquinone oxidoreductase chain 2 OS=Marchantia polymorpha GN=ND2 PE=3 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 1.225e-47
Identity = 96/130 (73.85%), Postives = 104/130 (80.00%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQTRVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPK 392
            IGH  Y+  GF CGTIEGI SLLIGIFIY LMT++ FAIVLALRQ R KYIA LG LAKTNPI AIT S+TMFSYAGIPPLAGFCSKFYLFFAALGCGAY LA +GVVTSVI C+   R  ++  F  PK
Sbjct:  314 IGHVGYLLIGFSCGTIEGIQSLLIGIFIYVLMTVNVFAIVLALRQNRFKYIADLGALAKTNPILAITLSITMFSYAGIPPLAGFCSKFYLFFAALGCGAYLLALIGVVTSVISCFYYIRFVKIMYFDTPK 443          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_AZOC5 (NADH-quinone oxidoreductase subunit N OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) GN=nuoN PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 8.842e-22
Identity = 55/131 (41.98%), Postives = 81/131 (61.83%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQT--RVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGP 389
            IGH  +   G   GT +G+  +L+ + IY +MT+ +F  VLA+R+    V+ I  L  LA+T P+ A+  +  MFS AGIPPLAGF +K+Y+F AA+  G Y LA +GVV SV+G +   R+ ++  F  P
Sbjct:  302 IGHMGFALVGLAAGTEQGVTGVLLYMAIYVVMTLGSFTCVLAMRRDGRSVETIEDLAGLARTKPLMALALAALMFSLAGIPPLAGFVAKYYVFLAAIQAGLYGLAVIGVVASVVGAYYYLRVVKIMYFDEP 432          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_MAGSA (NADH-quinone oxidoreductase subunit N OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=nuoN PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 4.388e-21
Identity = 55/138 (39.86%), Postives = 82/138 (59.42%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQT--RVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPKAVLRAP 410
            IGH  ++  G   G+  GI  +LI + IY  M + AFA++L++RQ    V+ I  L  L+KT+P+ A   ++ MFS AG+PPLAGF  KFY+F AA+  G Y L+ +GV++SV+  +   R+ +V  F  P      P
Sbjct:  308 IGHVGFVLVGIAAGSTLGIQGVLIYLAIYLFMNVGAFAVILSMRQKGRMVEGIDDLAGLSKTHPMMAFVMAVLMFSMAGVPPLAGFWGKFYVFMAAIESGLYTLSILGVLSSVVSTYYYLRIVKVMYFDEPVEAFDKP 445          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON1_RHIME (NADH-quinone oxidoreductase subunit N 1 OS=Rhizobium meliloti GN=nuoN1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.178e-20
Identity = 51/133 (38.35%), Postives = 82/133 (61.65%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQTRVKYIAGLGPLA---KTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPK 392
            IGH  Y   G   G++ G+  +++ + IY +MT+  FA +LA+R+   +++ G+  LA   +TNP  A   ++ MFS AGIPPLAGF +K+++F AA+    Y LA +GV+ SV+G +   R+ +V  F  P+
Sbjct:  305 IGHMGYALVGLAAGSMAGVRGVILYMLIYMVMTLGTFACILAMRRREGEHVEGIDDLAGLSQTNPFMATVLTILMFSLAGIPPLAGFFAKYFVFVAAIEAQLYGLAIIGVLASVVGAYYYLRVIKVMWFEEPR 437          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_METNO (NADH-quinone oxidoreductase subunit N OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=nuoN PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 3.715e-20
Identity = 54/133 (40.60%), Postives = 81/133 (60.90%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQTRVKY--IAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPKA 395
            IG+  Y   G   GT EG+  +++ + IY  MT+ AFA++L +R+    +  I  L  L++T+P  A   ++ MFS AGIPPLAGF +KFY+F AA+  G   LA +GVVTSV+G +   R+ ++  F   +A
Sbjct:  308 IGNVGYALIGLAAGTEEGVRGVVVYMAIYLAMTLGAFAVILGMRRGNRMFETIEDLSGLSRTHPWLAFCLAMMMFSLAGIPPLAGFFAKFYVFAAAIKAGLNVLAVIGVVTSVVGAYYYVRIVKIMYFDDAQA 440          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_RHORT (NADH-quinone oxidoreductase subunit N OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=nuoN PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.081e-19
Identity = 51/128 (39.84%), Postives = 77/128 (60.16%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQT--RVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQF 380
            IGH  Y   G   GT EG+  +L+ + IY  M +  F ++LA+RQ    V+ I  L  L+K +P+ A   ++ MFS AG+PPLAGF  KFY+F AA+  G + LA +GV++SV+  +   R+ ++  F
Sbjct:  307 IGHVGYALIGIAAGTTEGVRGVLVYLAIYLFMNVGTFTVILAMRQKGRAVEGINDLAGLSKQHPMMAAAMAVFMFSMAGVPPLAGFFGKFYVFMAAVNSGLFALAVIGVLSSVVAAFYYLRIIKLMYF 434          
BLAST of DY260235 vs. ExPASy Swiss-Prot
Match: NUON_GLUDA (NADH-quinone oxidoreductase subunit N OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=nuoN PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 7.006e-19
Identity = 56/135 (41.48%), Postives = 78/135 (57.78%), Query Frame = 3
Query:    3 IGHACYIPTGFPCGTIEGIPSLLIGIFIYALMTIDAFAIVLALRQT--RVKYIAGLGPLAKTNPISAITFSLTMFSYAGIPPLAGFCSKFYLFFAALGCGAYFLASVGVVTSVIGCWAAGRLPRVSQFGGPKAVL 401
            IGH  Y   G   GT EG+   L+ +  Y LM + AFA+++A+R+    V  IA L  L KT+P  A   ++ MFS AG PPLAGF  K  +F+AA+    + LA++GVV+SVIG +   R+ +V  F    A L
Sbjct:  300 IGHMGYALMGLCAGTAEGMRGTLVYLTTYLLMNVGAFAVIIAMRRKGREVTGIADLAGLGKTDPGLATAMAIFMFSMAGAPPLAGFFGKMMVFYAAINAHLFGLAAIGVVSSVIGGYYYVRIVKVMFFDDAAAPL 434          
The following BLAST results are available for this feature:
BLAST of DY260235 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
NU2M_BETVU2.798e-7673.61NADH-ubiquinone oxidoreductase chain 2 OS=Beta vul... [more]
NU2M_ARATH1.071e-5181.54NADH-ubiquinone oxidoreductase chain 2 OS=Arabidop... [more]
NU2M_OENBE3.116e-5180.77NADH-ubiquinone oxidoreductase chain 2 OS=Oenother... [more]
NU2M_MARPO1.225e-4773.85NADH-ubiquinone oxidoreductase chain 2 OS=Marchant... [more]
NUON_AZOC58.842e-2241.98NADH-quinone oxidoreductase subunit N OS=Azorhizob... [more]
NUON_MAGSA4.388e-2139.86NADH-quinone oxidoreductase subunit N OS=Magnetosp... [more]
NUON1_RHIME2.178e-2038.35NADH-quinone oxidoreductase subunit N 1 OS=Rhizobi... [more]
NUON_METNO3.715e-2040.60NADH-quinone oxidoreductase subunit N OS=Methyloba... [more]
NUON_RHORT1.081e-1939.84NADH-quinone oxidoreductase subunit N OS=Rhodospir... [more]
NUON_GLUDA7.006e-1941.48NADH-quinone oxidoreductase subunit N OS=Gluconace... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YM21FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260235 ID=DY260235; Name=DY260235; organism=Citrus clementina; type=EST; length=1038bp
CAATTGGACATGCTTGTTATATTCCTACTGGTTTCCCATGTGGAACCATA
GAAGGAATTCCATCCCTACTAATTGGTATCTTTATTTATGCCTTAATGAC
GATAGATGCATTCGCCATAGTTTTAGCATTACGGCAAACCCGTGTCAAAT
ATATAGCGGGTTTGGGCCCCCTAGCCAAAACGAATCCTATTTCGGCTATT
ACCTTCTCCCTTACTATGTTCTCATACGCGGGAATACCCCCGTTAGCCGG
CTTTTGTAGCAAATTCTATTTGTTCTTCGCCGCTTTGGGTTGTGGGGCTT
ACTTCCTAGCCTCAGTGGGAGTAGTGACTAGCGTTATAGGTTGTTGGGCG
GCCGGAAGGTTGCCACGAGTAAGTCAGTTTGGGGGACCGAAGGCAGTTCT
CCGTGCACCGGACACGTAGTTTACCCAATCAGTTGCGACACGGATGGGAA
TGCATGCTACGAAAGATAGGGTAGAGTCTGATACATCAACCGTCTACTCA
ATATCCTTGTACGAGTCCACAATCACTACACGAGATGAACCTTGGTTTGG
TGAATTGAAGTTGGCCTTAGGTGTAATAGGACTCCCAGTTACTGCGCGCG
ATCGTATACTGAGGTGCTCCCCGCCCATTGTTGAAACCACCCAAGCCGGG
CCCGGGCCGGGCCTCGATTCAGAAAGATGAAGGGCCCCCAAGTCTAAATA
GGGGGTTACAAACCCCCCATCCCATTGGGGGCCGAAAACCAATCCACCTC
TCGATGTGAGACAGCCTTTTCCATTTTATTTGGGAAAGAACGGCCAAGTC
CCTCCCAACCCCCCAATGAAAAATAAAAGGAAAACCCAAGCCCCCAAGGG
CCCCCCAACCCCCAGCCGAAACCGGCCCCGAAAAAAAATAATGGTGGAGG
AAAAACCCCCCCACCCCCTTCCCCTCCCCTCCCGGGGCCCAACCCTGCCC
TCCTTTCCCCGGCCCAATCCAAGGATTGGGGCCCTCCTCCCCCCCCCCAC
CCCACACTACCCATTCCAAAAAAATCCCTTTTTGGAAT
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