DY260240

Overview
NameDY260240
Unique NameDY260240
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1123
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260240_ssr614 microsatellite DY260240_ssr614:614..625. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1458 contig Ccv1_Contig1458:1..1123. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_SOLTU (Soluble inorganic pyrophosphatase OS=Solanum tuberosum GN=PPA PE=2 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 4.863e-53
Identity = 95/113 (84.07%), Postives = 107/113 (94.69%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQKNDNKEVAVNEFSPSSAAVEAIQY 339
            P NY FIPRTLCEDNDPMDVL+LMQEPVLPGCFLRA+AIGLMPMIDQGEKDDKIIAVCADDPEY+HY DIK+LPPHRL+EIRRFFEDY+KN+NK+VAV++F P ++AV AIQY
Sbjct:   84 PQNYGFIPRTLCEDNDPMDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYTDIKQLPPHRLAEIRRFFEDYKKNENKDVAVDDFLPPNSAVNAIQY 196          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_ORYSJ (Soluble inorganic pyrophosphatase OS=Oryza sativa subsp. japonica GN=IPP PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 5.377e-52
Identity = 93/113 (82.30%), Postives = 104/113 (92.04%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQKNDNKEVAVNEFSPSSAAVEAIQY 339
            PHNY FIPRTLCED DPMDVL+LMQE V+PGCFLRA+AIGLMPMIDQGEKDDKIIAVCADDPEY+H+ DIKE+PPHRL EIRRFFEDY+KN+NKEVAVNEF P+  A+ AI+Y
Sbjct:   87 PHNYGFIPRTLCEDGDPMDVLVLMQEQVVPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPHRLQEIRRFFEDYKKNENKEVAVNEFLPAEDAINAIKY 199          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_ORYSI (Soluble inorganic pyrophosphatase OS=Oryza sativa subsp. indica GN=IPP PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 5.377e-52
Identity = 93/113 (82.30%), Postives = 104/113 (92.04%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQKNDNKEVAVNEFSPSSAAVEAIQY 339
            PHNY FIPRTLCED DPMDVL+LMQE V+PGCFLRA+AIGLMPMIDQGEKDDKIIAVCADDPEY+H+ DIKE+PPHRL EIRRFFEDY+KN+NKEVAVNEF P+  A+ AI+Y
Sbjct:   87 PHNYGFIPRTLCEDGDPMDVLVLMQEQVVPGCFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHFRDIKEIPPHRLQEIRRFFEDYKKNENKEVAVNEFLPAEDAINAIKY 199          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_MAIZE (Soluble inorganic pyrophosphatase OS=Zea mays GN=IPP PE=2 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 2.668e-51
Identity = 93/113 (82.30%), Postives = 104/113 (92.04%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQKNDNKEVAVNEFSPSSAAVEAIQY 339
            PHNY F+PRTLCEDNDPMDVL+LMQEPV+PG FLRA+AIGLMPMIDQGEKDDKIIAVCADDPEY+HYNDI EL PHRL EI+RFFEDY+KN+NKEVAV+ F P++ A EAIQY
Sbjct:   87 PHNYGFVPRTLCEDNDPMDVLVLMQEPVVPGSFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDISELSPHRLQEIKRFFEDYKKNENKEVAVDAFLPATTAREAIQY 199          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR2_ARATH (Soluble inorganic pyrophosphatase 2 OS=Arabidopsis thaliana GN=PPA2 PE=2 SV=2)

HSP 1 Score: 195.282 bits (495), Expect = 5.564e-49
Identity = 89/112 (79.46%), Postives = 103/112 (91.96%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQKNDNKEVAVNEFSPSSAAVEAIQ 336
            PHNY FIPRT+CED+DPMDVL+LMQEPVL G FLRA+AIGLMPMIDQGEKDDKIIAVCADDPE++HY DIKELPPHRL+EIRRFFEDY+KN+NK+V V  F P+ AA++AI+
Sbjct:   91 PHNYGFIPRTICEDSDPMDVLVLMQEPVLTGSFLRARAIGLMPMIDQGEKDDKIIAVCADDPEFRHYRDIKELPPHRLAEIRRFFEDYKKNENKKVDVEAFLPAQAAIDAIK 202          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_HORVD (Soluble inorganic pyrophosphatase OS=Hordeum vulgare var. distichum GN=IPP PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 2.675e-43
Identity = 87/113 (76.99%), Postives = 98/113 (86.73%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQKNDNKEVAVNEFSPSSAAVEAIQY 339
            PHNY FIPRTLCEDNDPMDVL+LMQEPV+PG FLRA+AIGLMPMIDQGEKDDKIIAVCADDPEY+HY+    L P RL EI+R  EDY+KN+NKEVAV+ F P++ A EAIQY
Sbjct:   90 PHNYGFIPRTLCEDNDPMDVLVLMQEPVIPGSFLRARAIGLMPMIDQGEKDDKIIAVCADDPEYRHYSTSVSLLP-RLQEIKR-LEDYKKNENKEVAVDAFLPATTAREAIQY 200          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR2_CHLRE (Soluble inorganic pyrophosphatase 2 OS=Chlamydomonas reinhardtii GN=ppa2 PE=1 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 7.284e-41
Identity = 74/112 (66.07%), Postives = 96/112 (85.71%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQKNDNKEVAVNEFSPSSAAVEAIQ 336
            PHNY F+P+TLCED DP+DVL+LMQEPV+P CFLRAK IG+M M+DQGE+DDK+IAV ADDPEYK + DI +LPPHRL+EI+RFFEDY+KN++KEV V++F  +  A + ++
Sbjct:   61 PHNYGFVPKTLCEDGDPLDVLVLMQEPVVPMCFLRAKPIGVMQMLDQGERDDKLIAVHADDPEYKGFTDISQLPPHRLAEIKRFFEDYKKNEHKEVVVDDFLGAEEAKKVVK 172          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_LEPIN (Inorganic pyrophosphatase OS=Leptospira interrogans GN=ppa PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 7.818e-27
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQKNDNKEVAVNEF 303
            P NY FIP++ C D DP+D+L+L Q  + P C ++AK IG+M M+D GE+DDKIIAV A+D    H NDI ELPPH   E++ FFEDY+K +NK V + EF
Sbjct:   54 PANYGFIPQSYCGDQDPLDILVLSQVELEPLCLVKAKVIGVMRMLDSGEEDDKIIAVAANDMSVNHINDISELPPHFTLELKHFFEDYKKLENKTVVIEEF 154          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_LEPIC (Inorganic pyrophosphatase OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=ppa PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 7.818e-27
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQKNDNKEVAVNEF 303
            P NY FIP++ C D DP+D+L+L Q  + P C ++AK IG+M M+D GE+DDKIIAV A+D    H NDI ELPPH   E++ FFEDY+K +NK V + EF
Sbjct:   54 PANYGFIPQSYCGDQDPLDILVLSQVELEPLCLVKAKVIGVMRMLDSGEEDDKIIAVAANDMSVNHINDISELPPHFTLELKHFFEDYKKLENKTVVIEEF 154          
BLAST of DY260240 vs. ExPASy Swiss-Prot
Match: IPYR_METKA (Inorganic pyrophosphatase OS=Methanopyrus kandleri GN=ppa PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 9.557e-25
Identity = 50/111 (45.05%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    1 PHNYFFIPRTLCEDNDPMDVLILMQEPVLPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYKHYNDIKELPPHRLSEIRRFFEDYQKNDNKEVAVNEFSPSSAAVEAI 333
            P +Y FIPRTL +D DP+D+L++MQ+P  PGC + A+ IGLM M+D  ++DDK++AV  +DP +K   D+ ++P H L EI   F +Y++ + KE  V  +  + AA EAI
Sbjct:   54 PLDYGFIPRTLYDDGDPLDILVIMQDPTFPGCVIEARPIGLMKMLDDSDQDDKVLAVPTEDPRFKDVKDLDDVPKHLLDEIAHMFSEYKRLEGKETEVLGWEGADAAKEAI 164          
The following BLAST results are available for this feature:
BLAST of DY260240 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 90
Match NameE-valueIdentityDescription
IPYR_SOLTU4.863e-5384.07Soluble inorganic pyrophosphatase OS=Solanum tuber... [more]
IPYR_ORYSJ5.377e-5282.30Soluble inorganic pyrophosphatase OS=Oryza sativa ... [more]
IPYR_ORYSI5.377e-5282.30Soluble inorganic pyrophosphatase OS=Oryza sativa ... [more]
IPYR_MAIZE2.668e-5182.30Soluble inorganic pyrophosphatase OS=Zea mays GN=I... [more]
IPYR2_ARATH5.564e-4979.46Soluble inorganic pyrophosphatase 2 OS=Arabidopsis... [more]
IPYR_HORVD2.675e-4376.99Soluble inorganic pyrophosphatase OS=Hordeum vulga... [more]
IPYR2_CHLRE7.284e-4166.07Soluble inorganic pyrophosphatase 2 OS=Chlamydomon... [more]
IPYR_LEPIN7.818e-2754.46Inorganic pyrophosphatase OS=Leptospira interrogan... [more]
IPYR_LEPIC7.818e-2754.46Inorganic pyrophosphatase OS=Leptospira interrogan... [more]
IPYR_METKA9.557e-2545.05Inorganic pyrophosphatase OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YN04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260240 ID=DY260240; Name=DY260240; organism=Citrus clementina; type=EST; length=1123bp
CCTCATAACTATTTTTTCATCCCTCGCACATTATGTGAAGATAATGATCC
AATGGATGTTTTGATTCTTATGCAGGAGCCAGTCCTTCCCGGATGTTTCC
TGCGGGCCAAGGCTATTGGATTAATGCCCATGATTGATCAGGGAGAAAAA
GATGATAAGATCATTGCAGTTTGTGCCGATGATCCAGAGTATAAGCACTA
CAATGACATCAAAGAGCTTCCCCCTCATCGCCTTTCCGAGATCCGTCGTT
TCTTTGAAGATTACCAGAAAAATGACAACAAGGAGGTAGCAGTTAATGAA
TTTTCACCTTCTTCTGCTGCTGTTGAAGCCATCCAGTACCCCAATGGATC
TTTATGCCCCAGTACATTCTGCACACCCTGAGGCGGTAGGCCCTTCCCTT
CTTTTTTCCCTTGCCCCCCCCCCCTCGATAATCCAGGGCAACACCGTCAA
TTTGAATAAGTTATCTTCCCCAATGTATTTTGAAGGTTAGATAAACCTCA
TGCTTCCCCATTTTGATACTTTTGATGATAATTCTTGCCCTGCCCTTTTG
AACATTTTCCCGAACCAAATGCCCCAACGAATGGTCCCTCCCTCCGCACA
TCCCAACACAACAAAACAAACAAACCCACTTTCCTGTCACAAATTTGTCT
TACAACACACCCCCTCCCCACACCTCCCCCCCCCCCACACCGCCCCTACC
CCCCAAATCAAATCCATTCCTCCCACCCCGCCCGAGCCCCCCATACGGAA
TCCACACCACCTCGTTCTACCCCCCCACCCGCCCCCCCTCCCCCCCTGCC
CCCACCCCCCCCTCGCTCCCCCTCCACCGAAACACAATACTCCCCTCACC
CTACACAAACCCTCCCCAGACGCCACCATACACACGCCCACTTCCTCCCC
GCCCCGGCTCCACCCACCCCCGTTTCTTCAACGGCTCCCCCCTCCCCCAC
CGCACACGCGACCACACCCCCCTCACCCCCCCCCCTCCCACCCCCCACCT
TCCCTCCGCTACCGTTCCCCTCCCCCCCCCCCCCCTCTCCCACTCTCATC
CCCCAACTCCTCATCCCTCTTCTCCCTCTCCCCCCCTTCAACATACACGT
TCTCTTTTCTCCACTCCCCTCCC
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