DY260245

Overview
NameDY260245
Unique NameDY260245
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1015
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1461 contig Ccv1_Contig1461:1..1015. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: FEI1_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 1 OS=Arabidopsis thaliana GN=FEI1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 9.756e-51
Identity = 74/119 (62.18%), Postives = 89/119 (74.79%), Query Frame = 2
Query:  209 MGMYQIKCRGQWLLFILLLCITINKSRAINSDGEALLSFRTAVVSSDGFLNQWRPEDPDPCNWKGVKCD-KNKRVITLSLTNHKLSGPISADLGKLDQLKFLNLHSNNFYGEIPSELGN 562
            MG+ ++K    WLL I LLC   N+S+AI+ DGEALLSFR AV  SD F++QWRPEDPDPCNW GV CD K KRVITL+LT HK+ GP+  D+GKLD L+ L LH+N  YG IP+ LGN
Sbjct:    2 MGICEMKSCCSWLLLISLLCSLSNESQAISPDGEALLSFRNAVTRSDSFIHQWRPEDPDPCNWNGVTCDAKTKRVITLNLTYHKIMGPLPPDIGKLDHLRLLMLHNNALYGAIPTALGN 120          

HSP 2 Score: 47.7506 bits (112), Expect = 9.756e-51
Identity = 31/75 (41.33%), Postives = 45/75 (60.00%), Query Frame = 1
Query:  745 FLVRAIPSDGVLTNFSESLLLENRGLCGEANKCNRQNESGRSTKNPHPPTHPKS-RVKKKTRGGRLNNATPTVGA 966
            FLV  IPSDGVL+ FS++  + N  LCG+      Q++SG      +P +H +S + +KK  G  L +A+ TVGA
Sbjct:  181 FLVGQIPSDGVLSGFSKNSFIGNLNLCGKHVDVVCQDDSG------NPSSHSQSGQNQKKNSGKLLISASATVGA 249          

HSP 3 Score: 40.4318 bits (93), Expect = 9.756e-51
Identity = 22/60 (36.67%), Postives = 30/60 (50.00%), Query Frame = 3
Query:  564 CTELQGLSLQSNYLSGSIPXXXXXXXXXXXXXXXXXXXXDYIPPSLGKLQRLITFHVSHN 743
            CT L+ + LQSNY +G IP                      IP SLG+L++L  F+VS+N
Sbjct:  121 CTALEEIHLQSNYFTGPIPAEMGDLPGLQKLDMSSNTLSGPIPASLGQLKKLSNFNVSNN 180          
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: FEI2_ARATH (LRR receptor-like serine/threonine-protein kinase FEI 2 OS=Arabidopsis thaliana GN=FEI2 PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 2.281e-45
Identity = 72/126 (57.14%), Postives = 86/126 (68.25%), Query Frame = 2
Query:  209 MGMYQIKCRGQWLLFILLLCITINKSRAINSDGEALLSFRTAVVSSDGFLNQWRPEDPDPCNWKGVKCD-KNKRVITLSLTNHKLSGPISADLGKLDQLKFLNLHSNNFYGEIPSELGNLHRVAGI 583
            MG+  +K    W L I  L    N++ AI+ DGEALLSFR  V++SDG +  WRPEDPDPCNWKGV CD K KRVI LSLT HKL GP+  +LGKLDQL+ L LH+N  Y  IP+ LGN   + GI
Sbjct:    1 MGICLMKRCCSWFLLISFLSALTNENEAISPDGEALLSFRNGVLASDGVIGLWRPEDPDPCNWKGVTCDAKTKRVIALSLTYHKLRGPLPPELGKLDQLRLLMLHNNALYQSIPASLGNCTALEGI 126          

HSP 2 Score: 45.0542 bits (105), Expect = 2.281e-45
Identity = 23/60 (38.33%), Postives = 33/60 (55.00%), Query Frame = 3
Query:  564 CTELQGLSLQSNYLSGSIPXXXXXXXXXXXXXXXXXXXXDYIPPSLGKLQRLITFHVSHN 743
            CT L+G+ LQ+NY++G+IP                      IP SLG+L+RL  F+VS+N
Sbjct:  120 CTALEGIYLQNNYITGTIPSEIGNLSGLKNLDLSNNNLNGAIPASLGQLKRLTKFNVSNN 179          

HSP 3 Score: 35.8094 bits (81), Expect = 2.281e-45
Identity = 28/75 (37.33%), Postives = 36/75 (48.00%), Query Frame = 1
Query:  745 FLVRAIPSDGVLTNFSESLLLENRGLCGEANK--CNRQNESGRSTKNPHPPTHPKSRVKKKTRGGRLNNATPTVG 963
            FLV  IPSDG+L   S      NR LCG+     C   N+SG ST +  P     +  K+      L +A+ TVG
Sbjct:  180 FLVGKIPSDGLLARLSRDSFNGNRNLCGKQIDIVC---NDSGNSTASGSPTGQGGNNPKR-----LLISASATVG 246          
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: RPK1_IPONI (Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 3.487e-15
Identity = 45/107 (42.06%), Postives = 63/107 (58.88%), Query Frame = 2
Query:  251 FILLLCIT--INKSRAINSDGEALLSFRTAVVSSDGFLNQ-WRPEDPDPCNWKGVKCDKNKRVITLSLTNHKLSGPISADLGKLDQLKFLNLHSNNFYGEIPSELGN 562
            F+L LC T  I  + A+NSDG ALLS      S    + Q W   D  PC+W GV+CD+ + V TL+L+++ +SG    ++  L  LK + L  N F+G IPS+LGN
Sbjct:    8 FLLFLCSTSSIYAAFALNSDGAALLSLTRHWTSIPSDITQSWNASDSTPCSWLGVECDRRQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGN 114          
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.015e-14
Identity = 45/125 (36.00%), Postives = 64/125 (51.20%), Query Frame = 2
Query:  209 MGMYQIKCRGQWLLFILLLCITINKSRAINSDGEALLSFRTAVVSSDGFLNQWRPEDPDPCNWKGVKCDKNKRVITLSLTNHKLSGPISADLGKLDQLKFLNLHSNNFYGEIPSELGNLHRVAGI 583
            MG  + +  G   L  LLL        + N +G+AL S R  +V  +  L  W P   +PC W  V C+    VI + L N  LSG +   LG+L  L++L L+SNN  G +PS+LGNL  +  +
Sbjct:    1 MGRKKFEAFGFVCLISLLLLFNSLWLASSNMEGDALHSLRANLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNADLSGQLVPQLGQLKNLQYLELYSNNITGPVPSDLGNLTNLVSL 125          
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: Y4372_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At4g37250 OS=Arabidopsis thaliana GN=At4g37250 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.731e-14
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  233 RGQWLLFILLLCITINKSRAINSDGEALLSFRTAV-VSSDGFLNQWRPEDPDPCNWKGVKCDKNKRVITLSLTNHKLSGPISADLGKL------------------------DQLKFLNLHSNNFYGEIPSELGNLHRV 574
            R + +  I     ++  S A+NSDG  L+ F+++V V     L  W  +   PC+W+G+ C+ + +V+TLSL N +L G I +DLG L                         +L+FL+L SN   GEIPS +G+LH +
Sbjct:    2 RMELISVIFFFFCSVLSSSALNSDGLVLMKFKSSVLVDPLSLLQTWNYKHESPCSWRGISCNNDSKVLTLSLPNSQLLGSIPSDLGSLLTLQSLDLSNNSFNGPLPVSFFNARELRFLDLSSNMISGEIPSAIGDLHNL 140          
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.952e-14
Identity = 45/118 (38.14%), Postives = 66/118 (55.93%), Query Frame = 2
Query:  242 WLLFILLLCITI-NKS---RAINSDGEALLSFRTAVVSSDGFLNQWRPEDPDPCNWKGVKCDKNKRVITLSLTNHKLSGPISADLGKLDQLKFLNLHSNNFYGEIPSELGNLHRVAGI 583
            +++FILL  I + N S    + N +G+AL + R  +V  +  L  W P   +PC W  V C+    VI + L N +LSG +  +LG L  L++L L+SNN  G IPS LGNL  +  +
Sbjct:    5 YVVFILLSLILLPNHSLWLASANLEGDALHTLRVTLVDPNNVLQSWDPTLVNPCTWFHVTCNNENSVIRVDLGNAELSGHLVPELGVLKNLQYLELYSNNITGPIPSNLGNLTNLVSL 122          
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: Y1341_ARATH (Probable LRR receptor-like serine/threonine-protein kinase At1g34110 OS=Arabidopsis thaliana GN=At1g34110 PE=2 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 8.589e-14
Identity = 48/152 (31.58%), Postives = 76/152 (50.00%), Query Frame = 2
Query:  251 FILLLCITINKSR---AINSDGEALLSFRTAVVSSDGFLNQWRPEDPDPCNWKGVKCDKNKRVIT------------------------LSLTNHKLSGPISADLGKLDQLKFLNLHSNNFYGEIPSELG----------NLHRVAGIIPAE 595
            F+ L C  ++ ++   +++SDG+ALLS +     S    + W P+D  PC+W G+ C  + RVI+                        L+L++  LSGPI    GKL  L+ L+L SN+  G IPSELG          N ++++G IP++
Sbjct:   10 FLFLFCSWVSMAQPTLSLSSDGQALLSLKRP---SPSLFSSWDPQDQTPCSWYGITCSADNRVISVSIPDTFLNLSSIPDLSSLSSLQFLNLSSTNLSGPIPPSFGKLTHLRLLDLSSNSLSGPIPSELGRLSTLQFLILNANKLSGSIPSQ 158          
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.827e-13
Identity = 37/114 (32.46%), Postives = 61/114 (53.51%), Query Frame = 2
Query:  242 WLLFILLLCITINKSRAINSDGEALLSFRTAVVSSDGFLNQWRPEDPDPCNWKGVKCDKNKRVITLSLTNHKLSGPISADLGKLDQLKFLNLHSNNFYGEIPSELGNLHRVAGI 583
            WL+ +L L + ++     N++G+AL + + ++   +  L  W      PC W  V C+ +  V  + L N  LSG +   LG+L  L++L L+SNN  G IP +LGNL  +  +
Sbjct:   12 WLILVLDLVLRVSG----NAEGDALSALKNSLADPNKVLQSWDATLVTPCTWFHVTCNSDNSVTRVDLGNANLSGQLVMQLGQLPNLQYLELYSNNITGTIPEQLGNLTELVSL 121          

HSP 2 Score: 22.3274 bits (46), Expect = 2.827e-13
Identity = 18/59 (30.51%), Postives = 21/59 (35.59%), Query Frame = 3
Query:  567 TELQGLSLQSNYLSGSIPXXXXXXXXXXXXXXXXXXXXDYIPPSLGKLQRLITFHVSHN 743
            TEL  L L  N LSG IP                      IP SL  +  L    +S+N
Sbjct:  116 TELVSLDLYLNNLSGPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLSNN 174          
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: PEPR1_ARATH (Leucine-rich repeat receptor-like protein kinase PEPR1 OS=Arabidopsis thaliana GN=PEPR1 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.264e-13
Identity = 44/117 (37.61%), Postives = 64/117 (54.70%), Query Frame = 2
Query:  245 LLFILLLCITINKSRAINSDGEALLSFRTAV------VSSDGFLNQWRPEDPDPCNWKGVKCDKNKRVITLSLTNHKLSGPISADLGKLDQLKFLNLHSNNFYGEIPSELGNLHRVA 577
            L F L L   I     +NSDG  LLS    +      V+S   +N     +  PCNW G+ CD +K V +L+ T  ++SG +  ++G+L  L+ L+L +NNF G IPS LGN  ++A
Sbjct:   13 LFFCLFLSTHIISVSCLNSDGLTLLSLLKHLDRVPPQVTSTWKINA---SEATPCNWFGITCDDSKNVASLNFTRSRVSGQLGPEIGELKSLQILDLSTNNFSGTIPSTLGNCTKLA 126          
BLAST of DY260245 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 2.116e-12
Identity = 41/106 (38.68%), Postives = 57/106 (53.77%), Query Frame = 2
Query:  257 LLLCITINKSRAINSDGEALLSFRTAVVSSD---GFLNQWRPEDPDPCNWKGVKCDKNKRVITLSLTNHKLSGPISADLGKLDQLKFLNLHSNNFYGEIPSELGNL 565
            LLL        A N++G+AL   + ++ S D     L  W      PC W  V C+   +V  + L N KLSG +  +LG+L  L++L L+SNN  GEIP ELG+L
Sbjct:   17 LLLLFNFTLRVAGNAEGDALTQLKNSLSSGDPANNVLQSWDATLVTPCTWFHVTCNPENKVTRVDLGNAKLSGKLVPELGQLLNLQYLELYSNNITGEIPEELGDL 122          
The following BLAST results are available for this feature:
BLAST of DY260245 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
FEI1_ARATH9.756e-5162.18LRR receptor-like serine/threonine-protein kinase ... [more]
FEI2_ARATH2.281e-4557.14LRR receptor-like serine/threonine-protein kinase ... [more]
RPK1_IPONI3.487e-1542.06Receptor-like protein kinase OS=Ipomoea nil GN=INR... [more]
SERK2_ARATH1.015e-1436.00Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
Y4372_ARATH1.731e-1433.09Probable LRR receptor-like serine/threonine-protei... [more]
SERK1_ARATH2.952e-1438.14Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
Y1341_ARATH8.589e-1431.58Probable LRR receptor-like serine/threonine-protei... [more]
BAK1_ARATH2.827e-1332.46BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
PEPR1_ARATH3.264e-1337.61Leucine-rich repeat receptor-like protein kinase P... [more]
SERK4_ARATH2.116e-1238.68Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YN11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260245 ID=DY260245; Name=DY260245; organism=Citrus clementina; type=EST; length=1015bp
TTATTAGTAATCTTTTTTTTATCCCTTTACAACTAAGGGCTTGCGTTTCC
CTTCATAGATCAGAATCAGTAGGAATAAAAAGTTTTCTTTCCTCTGCAAT
TGCTAAATGTCATCATCAACTGAGTAACCATATGTTACACGGAAGCATTC
TGGAGCTTGCTGTATCAGATGATTTGTAGTAGCTATATTATGCTTGATGA
GTGCCACTATGGGCATGTATCAAATAAAATGTCGAGGGCAATGGCTTCTT
TTCATTCTACTGCTCTGTATCACAATAAACAAAAGCAGGGCCATCAATTC
TGATGGTGAGGCACTTCTAAGCTTCAGGACAGCGGTGGTTAGTTCAGATG
GTTTCCTTAATCAATGGAGACCAGAGGATCCTGACCCTTGTAACTGGAAA
GGAGTGAAATGTGATAAAAACAAGAGAGTAATAACTTTGAGCCTTACCAA
TCACAAATTGAGCGGACCAATATCAGCTGACCTTGGGAAGCTTGATCAGC
TAAAGTTTTTAAATCTTCATAGCAACAACTTTTATGGGGAAATTCCTTCG
GAATTGGGAAACCTGCACAGAGTTGCAGGGATTATCCCTGCAGAGCAATT
ACTTGAGCGGATCAATTCCAAGTGAACTGGGAAATCTATCGAATCTTCTG
AATCTGGATATTTCAAGCAACTCCCTCAGTGACTATATACCTCCCTCACT
TGGGAAATTACAAAGATTGATTACCTTCCATGTGTCCCACAACCTTTCTG
GTCCGAGCAATACCCTCTGATGGAGTGCTTACCAATTTTTCCGAAAGCCT
CCTCCTTGAAAATCGGGGTTTATGTGGGGAAGCCAATAAATGTAACAGGC
AAAATGAAAGTGGAAGATCCACAAAAAATCCCCATCCCCCAACTCACCCC
AAATCCAGGGTGAAAAAAAAAACCCGGGGAGGCCGGCTTAATAATGCCAC
CCCCACCGTGGGGGCCCCCTTCTCCGGGGGGCCCTTAAGGGGTTTCCTGG
GGTTCCCTTTCTTTA
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