DY260246

Overview
NameDY260246
Unique NameDY260246
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1022
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig468 contig Ccv1_Contig468:30..1064. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAR (Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 4.420e-34
Identity = 70/159 (44.03%), Postives = 97/159 (61.01%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MGV   E E  S + P +LFKA + D  N +PK+AP  +K  +IL+GDGG GTIK + F +G  Y   K R+D +D+DNL+  YT  EGD +  + +   YD+K++ S +GGSI K  +  H   D  + E   K  +EK + LF+LVEAYLL NP+ Y
Sbjct:    1 MGVFTYETEFTSVIPPEKLFKAFILDADNLIPKVAPTAVKGTEILEGDGGVGTIKKVTFGEGSQYAYVKHRVDGIDKDNLSYSYTLIEGDALSDVIENIAYDIKLVASPDGGSIVKTTSHYHTKGDVEIKEEQVKAGKEKAAGLFKLVEAYLLANPDAY 159          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: PRU1_PRUAV (Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 2.426e-32
Identity = 70/159 (44.03%), Postives = 97/159 (61.01%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MGV   E E  S + P RLFKA + D  N +PKIAPQ IK  +IL+GDGG GTIK + F +G  Y   K +ID++D++N +  YT  EGD +    +K  Y+ K++ S +GGSI K  +  H   +  + E H K  +EK S LF+L+E YL G+P+ Y
Sbjct:    1 MGVFTYESEFTSEIPPPRLFKAFVLDADNLVPKIAPQAIKHSEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSIDKENYSYSYTLIEGDALGDTLEKISYETKLVASPSGGSIIKSTSHYHTKGNVEIKEEHVKAGKEKASNLFKLIETYLKGHPDAY 159          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: MAL12_MALDO (Major allergen Mal d 1 OS=Malus domestica PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 1.204e-31
Identity = 71/159 (44.65%), Postives = 97/159 (61.01%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MGV   E E  S + P RLFKA + D  N +PKIAPQ IK  +IL+GDGG GTIK + F +G  Y   K +ID++DE N +  YT  EGD +    +K  Y+ K++ SG+ GSI K ++  H   D  + E H K  +EK   LF+L+E+YL G+P+ Y
Sbjct:    1 MGVYTFENEYTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGDGGPGTIKKITFGEGSQYGYVKHKIDSVDEANYSYAYTLIEGDALTDTIEKVSYETKLVASGS-GSIIKSISHYHTKGDVEIKEEHVKAGKEKAHGLFKLIESYLKGHPDAY 158          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: PYRC1_PYRCO (Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 2.510e-29
Identity = 66/159 (41.51%), Postives = 96/159 (60.38%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MG+   E E  S + P RLFKA + D  N +PKIAPQ IK  +IL+G+GG GTIK + F +G  Y   K R+D++DE + +  YT  EGD +    +K  Y+ K++ SG+G +I K ++  H   D  + E H K  +EK   LF+L+E+YL  +P+ Y
Sbjct:    1 MGLYTFENEFTSEIPPPRLFKAFVLDADNLIPKIAPQAIKHAEILEGNGGPGTIKKITFGEGSQYGYVKHRVDSIDEASYSYAYTLIEGDALTDTIEKISYEAKLVASGSGSTI-KSISHYHTKGDIEIKEEHVKAGKEKAHGLFKLIESYLKDHPDAY 158          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: MAL11_MALDO (Major allergen Mal d 1 OS=Malus domestica GN=MALD1 PE=1 SV=2)

HSP 1 Score: 129.798 bits (325), Expect = 2.510e-29
Identity = 67/159 (42.14%), Postives = 96/159 (60.38%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MGV   E E  S + PSRLFKA + D  N +PKIAPQ IK  +IL+G+GG GTIK + F +G  Y   K RID++DE + +  YT  EGD +    +K  Y+ K++  G+G +I K ++  H   +  + E H K  +EK   LF+L+E+YL  +P+ Y
Sbjct:    1 MGVYTFENEFTSEIPPSRLFKAFVLDADNLIPKIAPQAIKQAEILEGNGGPGTIKKITFGEGSQYGYVKHRIDSIDEASYSYSYTLIEGDALTDTIEKISYETKLVACGSGSTI-KSISHYHTKGNIEIKEEHVKVGKEKAHGLFKLIESYLKDHPDAY 158          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: PRS2_SOLTU (Pathogenesis-related protein STH-2 OS=Solanum tuberosum GN=STH-2 PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 4.007e-27
Identity = 66/160 (41.25%), Postives = 98/160 (61.25%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKALN-DTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLYA 520
            MGV     E  + +AP+RLFKAL  D+ N +PK+ PQ +K+I+  +GDG   +IK +NF +G   K  K +I  +D+ NL  KY+  EGD +    +   YD+K    GNGG +CK + E H   D ++ +    E +++G ELF++VEAYLL NP++YA
Sbjct:    1 MGVTSYTHETTTPIAPTRLFKALVVDSDNLIPKLMPQ-VKNIEA-EGDG---SIKKMNFVEGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGDKLESISYDLKFEAHGNGGCVCKSITEYHTKGDYVLKDEEHNEGQKQGMELFKIVEAYLLANPSVYA 155          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: PRS1_SOLTU (Pathogenesis-related protein STH-21 OS=Solanum tuberosum GN=STH-21 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 1.166e-26
Identity = 67/160 (41.88%), Postives = 98/160 (61.25%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKALN-DTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLYA 520
            MGV     E  + VAP+RLFKAL  D+ N +PK+ PQ +K+I+  +GDG   +IK + F +G   K  K +I  +D+ NL  KY+  EGD +    +   YD+K    GNGG +CK +AE H   D ++ +    E +++G ELF++VEAYLL NP++YA
Sbjct:    1 MGVTSYTLETTTPVAPTRLFKALVVDSDNLIPKLMPQ-VKNIEA-EGDG---SIKKMTFVEGSPIKYLKHKIHVVDDKNLVTKYSMIEGDVLGDKLESISYDLKFEAHGNGGCVCKSIAEYHTKGDYVLKDEDHNEGKKQGMELFKIVEAYLLANPSVYA 155          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: MPAC1_CORAV (Major pollen allergen Cor a 1 isoforms 5, 6, 11 and 16 OS=Corylus avellana PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 1.523e-26
Identity = 62/159 (38.99%), Postives = 93/159 (58.49%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MGV   E E PS +  +RLFK+ + D    +PK+APQ I S++ ++G+GG GTIK + F +G  YK  K+R+D +D  N T  YT  EGD +    +K  +++KI+ +  GGSI K  ++ HA  D  +N    K ++E   +L + VE YLL +   Y
Sbjct:    1 MGVFNYEVETPSVIPAARLFKSYVLDGDKLIPKVAPQAITSVENVEGNGGPGTIKNITFGEGSRYKYVKERVDEVDNTNFTYSYTVIEGDVLGDKLEKVCHELKIVAAPGGGSILKISSKFHAKGDHEINAEEMKGAKEMAEKLLRAVETYLLAHSAEY 159          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: IPRT1_CATRO (Probable intracellular pathogenesis-related protein T1 OS=Catharanthus roseus GN=PCKR3 PE=1 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 1.523e-26
Identity = 61/157 (38.85%), Postives = 96/157 (61.15%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPN 511
            MGVI  + E+ S+++ ++LFKA + D    + K  P  IKS++ILQGDGGAGTIKL++F +GG     K  ++ LD+DN++ KY+  +G+ ++       Y +KI  SG+ GS+CK     H      +NE   K  +E+ +E+ + VEAY+  NP+
Sbjct:    1 MGVISYDMEIKSSLSAAKLFKAFVLDVGTLINKALPNVIKSVEILQGDGGAGTIKLVHFGEGGPVPSVKHHVEELDKDNMSYKYSIVDGEALMPGLQSISYVIKIEPSGH-GSVCKHNTTFHFKAGSNINEDEIKAGKERAAEMIKAVEAYVQANPD 156          
BLAST of DY260246 vs. ExPASy Swiss-Prot
Match: BEV1M_BETVE (Major pollen allergen Bet v 1-M/N OS=Betula verrucosa GN=BETV1M PE=1 SV=2)

HSP 1 Score: 116.701 bits (291), Expect = 2.199e-25
Identity = 60/159 (37.74%), Postives = 91/159 (57.23%), Query Frame = 2
Query:   44 MGVIPVEKEVPSAVAPSRLFKA-LNDTPNFLPKIAPQTIKSIDILQGDGGAGTIKLLNFADGGNYKPTKQRIDALDEDNLTMKYTTYEGDGILKMTDKSVYDVKIMDSGNGGSICKFVAEVHANDDKLVNEGHAKESEEKGSELFQLVEAYLLGNPNLY 517
            MGV   E E  S +  +RLFKA + D  N +PK+APQ I S++ ++G+GG GTIK + F +G  +K  K+R+D +D  N    Y+  EG  +    +K   ++KI+ + +GGSI K   + H   D  +   H K  +EKG  L + VE+YLL + + Y
Sbjct:    1 MGVFNYESETTSVIPAARLFKAFILDGDNLIPKVAPQAISSVENIEGNGGPGTIKKITFPEGSPFKYVKERVDEVDHANFKYSYSMIEGGALGDTLEKICNEIKIVATPDGGSILKISNKYHTKGDHEMKAEHMKAIKEKGEALLRAVESYLLAHSDAY 159          
The following BLAST results are available for this feature:
BLAST of DY260246 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 44
Match NameE-valueIdentityDescription
PRU1_PRUAR4.420e-3444.03Major allergen Pru ar 1 OS=Prunus armeniaca PE=1 S... [more]
PRU1_PRUAV2.426e-3244.03Major allergen Pru av 1 OS=Prunus avium GN=PRUA1 P... [more]
MAL12_MALDO1.204e-3144.65Major allergen Mal d 1 OS=Malus domestica PE=1 SV=... [more]
PYRC1_PYRCO2.510e-2941.51Major allergen Pyr c 1 OS=Pyrus communis GN=PYRC1 ... [more]
MAL11_MALDO2.510e-2942.14Major allergen Mal d 1 OS=Malus domestica GN=MALD1... [more]
PRS2_SOLTU4.007e-2741.25Pathogenesis-related protein STH-2 OS=Solanum tube... [more]
PRS1_SOLTU1.166e-2641.88Pathogenesis-related protein STH-21 OS=Solanum tub... [more]
MPAC1_CORAV1.523e-2638.99Major pollen allergen Cor a 1 isoforms 5, 6, 11 an... [more]
IPRT1_CATRO1.523e-2638.85Probable intracellular pathogenesis-related protei... [more]
BEV1M_BETVE2.199e-2537.74Major pollen allergen Bet v 1-M/N OS=Betula verruc... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YN12FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260246 ID=DY260246; Name=DY260246; organism=Citrus clementina; type=EST; length=1022bp
TTGAACCTCTCCCTTTTCTCCAATTAAGCAATAGATATTTAACATGGGTG
TCATTCCCGTTGAGAAAGAGGTGCCATCGGCTGTTGCCCCATCAAGATTG
TTCAAGGCTTTAAATGACACTCCCAATTTTTTGCCAAAGATCGCGCCTCA
AACAATTAAGAGCATCGATATTCTTCAAGGAGATGGAGGTGCTGGCACTA
TCAAGCTGTTGAACTTTGCTGATGGTGGTAATTACAAGCCGACCAAGCAA
AGAATTGATGCACTTGACGAGGACAATTTGACAATGAAGTACACTACGTA
TGAAGGAGATGGGATTTTGAAAATGACGGACAAAAGCGTGTACGATGTTA
AGATCATGGATTCTGGCAATGGAGGAAGCATCTGCAAGTTTGTTGCGGAG
GTCCATGCAAATGACGATAAACTGGTCAACGAAGGGCACGCAAAGGAATC
CGAAGAAAAAGGATCGGAATTGTTCCAGCTCGTGGAAGCCTATCTCTTGG
GTAATCCCAATCTCTATGCTTAAATCAATCCTCCATATGCATTGGCTTTG
CCCATTGCCAAATTTCCCGCTAGCTAACTAAATAAGGCTGGTGCCCTTGT
ACGTAATTAAGCTTTTGAAGCTGAATGTAAATACCCCCGTATGTACCTTA
GTGTGTTCCTTAAAAAAAAAAAAAAAAAAAAAAAACCCCCCTTTCTTGTA
CCAAGTTTGGCCTTAAACAAAAAGCTTGCTTATCCATTTGTTGCCCCCAA
ACCGGCCCCACCCCTTCCAAATAAAACTCTTATTTTCCACCCCCCCGAAA
TCCCCCAAAGTGAGTTCTAATAACTGGTCCTAACTGTTTCCCTGGCCGCC
CCCCGGCCCCGGGTCCCAAAACCCTCAGGTTTCCCTGCCCCAGAAAAAAA
ATTTTCCCCCCTGCTCAAAAACCTCCCCCCCCCCTCAAACCAAACCGCCC
TTTCTTCCCCTCCCCGATTTTCCCCTCCCCCTTTTTTTGAAAAACCCCCT
TCCCTCTAAGAACAGAAAAAAA
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