DY260248

Overview
NameDY260248
Unique NameDY260248
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1072
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY260248 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 6.888e-25
Identity = 60/150 (40.00%), Postives = 87/150 (58.00%), Query Frame = 1 
Query:   16 MLAIFHKAFANPPEELHSPASQKCSKRPKLPEDTLSDFLSRHPDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTA 465
            MLA+F ++   PP EL  P +    K  K  E+    F +   D+TF   F    +       +PL    R     +D++C+F G+L+N   L + YGLS+   EAM ++EAY+ LRDR PYP DQV+K+L+G FAF+++DSKA T+F A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQP--RSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of DY260248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC6.888e-2540.00Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YN16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260248 ID=DY260248; Name=DY260248; organism=Citrus clementina; type=EST; length=1072bp
TTTTGTTATAACTTTATGTTGGCGATATTTCACAAGGCGTTTGCCAATCC
GCCTGAGGAGCTTCATAGCCCTGCGTCTCAAAAATGTTCGAAGAGGCCTA
AACTCCCTGAGGATACCCTCAGTGACTTCCTCTCCCGTCACCCTGATAAC
ACTTTCTCCATGAACTTTGGCCATGCTGCTGTTCTTGCTTACGTTCCCCC
TCACTCCCCTTTAACCAAGGACCGAAGGTTGTTTTGCGGGTTTGAGGACA
TATACTGTCTGTTCATGGGGTCCTTGAACAACTTGTGCTCGCTGATCAGG
CAATATGGGTTGTCAAAGGGAACCGATGAGGCCATGTTTGTGATAGAGGC
GTATCGTACGCTCAGAGACCGGGGTCCTTACCCAGCTGACCAGGTTGTCA
AGGATCTTGATGGGAGCTTTGCTTTTGTGGTCTACGATAGCAAGGCCGGC
ACGGTCTTCACTGCTCTGGGTTCTGATGGGGGAGTGAAGCTGTACTGGGG
AATTGCAGCCGATGGATCTGTGGTCATATCTGATGACTTGGAGGTCATCA
AAGAGGGATGTGCCAAGTCATTTGCTCCCTTCCCACAGGGGTGCATGTTC
CACAGTGAAGGAGGATTGATGAGCTTTGAGCATCCAATGAACAAGATAAG
GGCAATGCCAAGAGTAGATAGTGAAGGTGTCATGTGTGGAGCCAATTTCC
AGGTTGAAAAATACCCTAGGATCAACACCATTCCCCGTGTGGGAAGTGAA
GCCGACTGGACTATCCATGGGAACCACTTTATTTATCAATTAAGGGACCA
TTTATTTGATCTTGCTGTGAATTTGCCCACCTCCCAACTCAAAACCTGAA
ACTACTACCCTTTCATTTTTCCTCCCATTAAGTTAAAAAAAAGTTGTTCC
CCCCCCCCTGGAAGGGTCCTTTTGACCCTTTTTCTTTGAAAAAAGGTGTT
TTTCCTTGTTAAGGGGGCCATCCCCCCATTTGTGGATAAAATTTAATTAA
CCCCGGGTTTGGGGTTTCCAAATAAATTTTGACCCTGGGAGAACGGGAAT
AGAAATTTTTTCCTCTTTGCCC
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