DY260255

Overview
NameDY260255
Unique NameDY260255
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1053
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14840 contig Ccv1_Contig14840:879..1931. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDIA_RAT (Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 3.084e-46
Identity = 85/159 (53.46%), Postives = 117/159 (73.58%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDVPE 518
            E GKVV V SEGE A CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDA THFE+T  D+ +
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKD 419          
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 3.084e-46
Identity = 85/159 (53.46%), Postives = 117/159 (73.58%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDVPE 518
            E GKVV V SEGE A CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDA THFE+T  D+ +
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKD 419          
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDIA_BOVIN (Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 4.028e-46
Identity = 85/159 (53.46%), Postives = 117/159 (73.58%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDVPE 518
            E GKVV V SEGE A CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDA THFE+T  D+ +
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKD 419          
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 8.974e-46
Identity = 84/159 (52.83%), Postives = 117/159 (73.58%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDVPE 518
            E GKVV V SEGE A CK+++CDPSY+P++V+K G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++ S    F S SYDA THFE+T  D+ +
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETAEPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKD 419          
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDIA_PONPY (Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.172e-45
Identity = 84/159 (52.83%), Postives = 116/159 (72.96%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDVPE 518
            E GKVV V SEGE A CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDA THFE+T  D+ +
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKD 419          
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDIA_PANTR (Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.172e-45
Identity = 84/159 (52.83%), Postives = 116/159 (72.96%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDVPE 518
            E GKVV V SEGE A CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDA THFE+T  D+ +
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKD 419          
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDIA_MACFA (Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 1.172e-45
Identity = 84/159 (52.83%), Postives = 116/159 (72.96%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDVPE 518
            E GKVV V SEGE A CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDA THFE+T  D+ +
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKD 419          
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDIA_HUMAN (Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2)

HSP 1 Score: 184.111 bits (466), Expect = 1.172e-45
Identity = 84/159 (52.83%), Postives = 116/159 (72.96%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDVPE 518
            E GKVV V SEGE A CK+++CDPSY+P++VRK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   SY+HNVA +GK+IA  ST  ET  P+ E++P ++LL P+D+ F  I D YEP+++      F S SYDA THFE+T  D+ +
Sbjct:  261 ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETTDPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKD 419          
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDIB_RAT (Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2 PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 7.861e-42
Identity = 78/159 (49.06%), Postives = 115/159 (72.33%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDVPE 518
            + GKVV V SEGE A CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA +ST  ET  P+ E++P ++LL P+++ F  I D + P +  +    FIS +YDA THFE+T  D+ +
Sbjct:  261 QNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKD 419          
BLAST of DY260255 vs. ExPASy Swiss-Prot
Match: GDIB_MOUSE (Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.861e-42
Identity = 78/159 (49.06%), Postives = 115/159 (72.33%), Query Frame = 3
Query:   42 EEGKVVRVPSEGETAMCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDMYLFCCSYSHNVAPKGKFIAFLSTEAETDHPQTELKPGIDLLGPVDEIFYDIYDRYEPVNEPSLDNCFISTSYDAPTHFESTVTDVPE 518
            + GKVV V SEGE A CK+++CDPSY+ ++V KVG+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SD+Y+   S++HNVA +GK+IA +ST  ET  P+ E++P ++LL P+++ F  I D + P +  +    FIS +YDA THFE+T  D+ +
Sbjct:  261 QNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRVICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETKEPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKD 419          
The following BLAST results are available for this feature:
BLAST of DY260255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
GDIA_RAT3.084e-4653.46Rab GDP dissociation inhibitor alpha OS=Rattus nor... [more]
GDIA_CANFA3.084e-4653.46Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]
GDIA_BOVIN4.028e-4653.46Rab GDP dissociation inhibitor alpha OS=Bos taurus... [more]
GDIA_MOUSE8.974e-4652.83Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]
GDIA_PONPY1.172e-4552.83Rab GDP dissociation inhibitor alpha OS=Pongo pygm... [more]
GDIA_PANTR1.172e-4552.83Rab GDP dissociation inhibitor alpha OS=Pan troglo... [more]
GDIA_MACFA1.172e-4552.83Rab GDP dissociation inhibitor alpha OS=Macaca fas... [more]
GDIA_HUMAN1.172e-4552.83Rab GDP dissociation inhibitor alpha OS=Homo sapie... [more]
GDIB_RAT7.861e-4249.06Rab GDP dissociation inhibitor beta OS=Rattus norv... [more]
GDIB_MOUSE7.861e-4249.06Rab GDP dissociation inhibitor beta OS=Mus musculu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260255 ID=DY260255; Name=DY260255; organism=Citrus clementina; type=EST; length=1053bp
CGTATATGTTGCCTTAACCTGAGTGCAAGGTAGAGTTTGATGAAGAAGGT
AAAGTAGTCCGTGTCCCGTCCGAAGGGGAAACTGCCATGTGCAAGAAAGT
TGTTTGTGATCCTTCCTATTTGCCCAACAAGGTGAGGAAGGTTGGCAGGG
TTGCTAGGGCAATCGCTATTATGAGCCACCCAATCCCAAACACCAATGAT
TCCCATTCAGTGCAGGTTATCCTTCCGCAAAAACAGTTGGGTCGTAGATC
AGACATGTACCTCTTCTGTTGTTCCTACTCCCACAATGTTGCTCCAAAGG
GCAAATTCATTGCATTCCTATCGACTGAGGCAGAGACTGATCATCCACAG
ACTGAACTTAAGCCTGGAATTGATCTTTTGGGTCCCGTCGATGAAATATT
CTATGATATATATGACAGATATGAACCAGTTAATGAACCTTCTTTGGACA
ATTGCTTTATCTCCACGAGCTATGATGCCCCAACACACTTTGAGTCAACT
GTCACGGATGTACCTGAACATGTATACCATGATAACCGGAAAGGTTCTTG
ACCCCCGTGTGGATTTAAGTGCCGCCCAGTGCCGCCCAAGAATGAAGAAT
CTGCCACCCCCCGTTCATGTTTGCCCATGTAATGCCCGCCGTGGGATAAA
GCTCCAAAGAATGTGGGGGTTGGACCCTTGCACTTTGCCCAGGTTCCCGT
TCCCCCACTTGGTGATTTCTATACTTATTCACACGCACCGGAAACCCCGT
CTCAATTCCCTCCCCCCGGGAACTAACGTTGACAATTCCAACCCCGCACC
CCCTACTTCGCCAAAATTCAAATCCTAAACTTTTCCCCCCTCCAAAAAAA
AAAAAAAAAAAACCCCACCTCCCTGTTTCCTATCCGCCACCTCCCAAACC
GCCTTTTCCTCTCTCTTTCTTCCCCCCGGTAACGGGTCCTCACCCCCCTC
CAATTACACTCTTCTTTTTCCCCCCCCCCTCCCTCCCCCCTTCCCGTGCC
CCCTCCCTCCCCGGCCACCAACCGCTTTCCCCGCGACCCCCCGCCCCCCT
ACC
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