DY260256

Overview
NameDY260256
Unique NameDY260256
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length974
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: AL2C4_ARATH (Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.727e-56
Identity = 112/178 (62.92%), Postives = 127/178 (71.35%), Query Frame = 1
Query:   40 LSNGSCK--SLFKMPEIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHGPWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSR-ALQGYTLREPIGVVGHILPWNFPTTMFFLK 564
            + NG C   +  K+PEIKF KLFING+F+D+ SGKTFETIDPR GE IA IAEGDKEDVDLAV AAR AFDHGPWPR +G ER  ++ KFADLI             D GKL    K  DIP  A   RY AGAADKIHGE LKM+R +L GYTL+EPIGVVG+I+PWNFP+ MF  K
Sbjct:    1 MENGKCNGATTVKLPEIKFTKLFINGQFIDAASGKTFETIDPRNGEVIATIAEGDKEDVDLAVNAARYAFDHGPWPRMTGFERAKLINKFADLIEENIEELAKLDAVDGGKLFQLGKYADIPATAGHFRYNAGAADKIHGETLKMTRQSLFGYTLKEPIGVVGNIIPWNFPSIMFATK 178          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: AL2B7_ARATH (Aldehyde dehydrogenase family 2 member B7, mitochondrial OS=Arabidopsis thaliana GN=ALDH2B7 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 2.818e-44
Identity = 78/162 (48.15%), Postives = 99/162 (61.11%), Query Frame = 1
Query:   79 EIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHGPWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTMFFLK 564
            +++  +L I G FVD+VSGKTF T+DPR GE IA+++EGD EDV+ AV AAR+AFD GPWP+ +  ER  I+ +FADLI             D GK +  +   ++P  A   RYYAG ADKIHG  +         TL EPIGV G I+PWNFP  M   K
Sbjct:   50 KVEHTQLLIGGRFVDAVSGKTFPTLDPRNGEVIAQVSEGDAEDVNRAVAAARKAFDEGPWPKMTAYERSKILFRFADLIEKHNDEIAALETWDNGKPYEQSAQIEVPMLARVFRYYAGWADKIHGMTMPGDGPHHVQTLHEPIGVAGQIIPWNFPLLMLSWK 211          

HSP 2 Score: 46.9802 bits (110), Expect = 2.818e-44
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL AL    L   AG+PDGV+N+V GFG TAGAA+
Sbjct:  230 TPLSALLVGKLLHEAGLPDGVVNIVSGFGATAGAAI 265          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 4.787e-44
Identity = 76/163 (46.63%), Postives = 96/163 (58.90%), Query Frame = 1
Query:   79 EIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTMFFLK 564
            +IK+ K+FIN E+ DSVSGK FE  +P   E I  +AEGDK D+D AVKAAR+AF+ G PW     +ER  ++ K ADL+             D GKL S A + D+     T+RY AG ADKIHG  + M      +T  EP+GV G I+PWNFP  MF  K
Sbjct:   25 KIKYTKIFINNEWHDSVSGKKFEVFNPANEEKICEVAEGDKADIDKAVKAARKAFELGSPWRTMDASERGRLLNKLADLVERDRLTLATMEAIDGGKLFSTAYLMDLGACIKTIRYCAGWADKIHGRTVPMDGNFFTFTRHEPVGVCGQIIPWNFPLVMFIWK 187          

HSP 2 Score: 55.4546 bits (132), Expect = 4.787e-44
Identity = 25/36 (69.44%), Postives = 28/36 (77.78%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL ALY   L K AG P GV+N+VPGFGPTAGAA+
Sbjct:  206 TPLSALYMGSLIKEAGFPPGVVNIVPGFGPTAGAAI 241          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 2.345e-43
Identity = 77/163 (47.24%), Postives = 96/163 (58.90%), Query Frame = 1
Query:   79 EIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTMFFLK 564
            +I++ K+FIN E+ DSVSGK F   +P T E + ++ EGDKEDVD AVKAARQAF  G PW     +ER  ++ K ADLI             + GKL+S A + D+ G   TLRY AG ADKI G  + +      YT  EPIGV G I+PWNFP  M   K
Sbjct:   17 KIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKEDVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWK 179          

HSP 2 Score: 53.9138 bits (128), Expect = 2.345e-43
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL AL+ A L K AG P GV+N+VPG+GPTAGAA+
Sbjct:  198 TPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAI 233          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: ALDH2_HORSE (Aldehyde dehydrogenase, mitochondrial OS=Equus caballus GN=ALDH2 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 8.809e-43
Identity = 72/162 (44.44%), Postives = 97/162 (59.88%), Query Frame = 1
Query:   70 KMPEIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTM 552
            + PE+ + ++FIN E+ D+VS KTF T++P TGE I ++A GDKEDVD AVKAAR AF  G PW R   ++R  ++ + ADLI             D GK +  + + D+      LRYYAG ADK HG+ + +      YT  EP+GV G I+PWNFP  M
Sbjct:   13 QQPEVFYNQIFINNEWHDAVSKKTFPTVNPSTGEVICQVAAGDKEDVDRAVKAARAAFQLGSPWRRMDASDRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLM 174          

HSP 2 Score: 57.3806 bits (137), Expect = 8.809e-43
Identity = 27/36 (75.00%), Postives = 29/36 (80.56%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL ALY A L K AG P GV+NVVPGFGPTAGAA+
Sbjct:  197 TPLTALYVANLTKEAGFPPGVVNVVPGFGPTAGAAI 232          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 1.148e-42
Identity = 76/163 (46.63%), Postives = 95/163 (58.28%), Query Frame = 1
Query:   79 EIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTMFFLK 564
            +I++ K+FIN E+ DSVSGK F   +P T E + ++ EGDK DVD AVKAARQAF  G PW     +ER  ++ K ADLI             + GKL+S A + D+ G   TLRY AG ADKI G  + +      YT  EPIGV G I+PWNFP  M   K
Sbjct:   17 KIQYTKIFINNEWHDSVSGKKFPVFNPATEEELCQVEEGDKADVDKAVKAARQAFQIGSPWRTMDASERGRLLYKLADLIERDRLLLATMESMNGGKLYSNAYLNDLAGCIKTLRYCAGWADKIQGRTIPIDGNFFTYTRHEPIGVCGQIIPWNFPLVMLIWK 179          

HSP 2 Score: 53.9138 bits (128), Expect = 1.148e-42
Identity = 24/36 (66.67%), Postives = 29/36 (80.56%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL AL+ A L K AG P GV+N+VPG+GPTAGAA+
Sbjct:  198 TPLTALHVASLIKEAGFPPGVVNIVPGYGPTAGAAI 233          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: ALDH2_BOVIN (Aldehyde dehydrogenase, mitochondrial OS=Bos taurus GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.948e-42
Identity = 72/162 (44.44%), Postives = 96/162 (59.26%), Query Frame = 1
Query:   70 KMPEIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTM 552
            + PE+ + ++FIN E+ D+VS KTF T++P TG+ I  +AEGDK DVD AVKAAR AF  G PW R   +ER  ++ + ADLI             D GK +  + + D+      LRYYAG ADK HG+ + +      YT  EP+GV G I+PWNFP  M
Sbjct:   33 QQPEVLYNQIFINNEWHDAVSKKTFPTVNPSTGDVICHVAEGDKADVDRAVKAARAAFQLGSPWRRMDASERGRLLNRLADLIERDRTYLAALETLDNGKPYIISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDYFSYTRHEPVGVCGQIIPWNFPLLM 194          

HSP 2 Score: 56.6102 bits (135), Expect = 1.948e-42
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL ALY A L K AG P GV+NV+PGFGPTAGAA+
Sbjct:  217 TPLTALYVANLIKEAGFPPGVVNVIPGFGPTAGAAI 252          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: ALDH2_PONAB (Aldehyde dehydrogenase, mitochondrial OS=Pongo abelii GN=ALDH2 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.948e-42
Identity = 73/162 (45.06%), Postives = 96/162 (59.26%), Query Frame = 1
Query:   70 KMPEIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTM 552
            + PE+   ++FIN E+ D+VS KTF T++P TGE I ++AEGDKEDVD AVKAAR AF  G PW R   + R  ++ + ADLI             D GK +  + + D+      LRYYAG ADK HG+ + +      YT  EP+GV G I+PWNFP  M
Sbjct:   30 QQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLM 191          

HSP 2 Score: 56.6102 bits (135), Expect = 1.948e-42
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL ALY A L K AG P GV+N+VPGFGPTAGAA+
Sbjct:  214 TPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAI 249          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: ALDH2_HUMAN (Aldehyde dehydrogenase, mitochondrial OS=Homo sapiens GN=ALDH2 PE=1 SV=2)

HSP 1 Score: 138.272 bits (347), Expect = 1.948e-42
Identity = 73/162 (45.06%), Postives = 96/162 (59.26%), Query Frame = 1
Query:   70 KMPEIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTM 552
            + PE+   ++FIN E+ D+VS KTF T++P TGE I ++AEGDKEDVD AVKAAR AF  G PW R   + R  ++ + ADLI             D GK +  + + D+      LRYYAG ADK HG+ + +      YT  EP+GV G I+PWNFP  M
Sbjct:   30 QQPEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGDKEDVDKAVKAARAAFQLGSPWRRMDASHRGRLLNRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLM 191          

HSP 2 Score: 56.6102 bits (135), Expect = 1.948e-42
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL ALY A L K AG P GV+N+VPGFGPTAGAA+
Sbjct:  214 TPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAI 249          
BLAST of DY260256 vs. ExPASy Swiss-Prot
Match: ALDH2_MOUSE (Aldehyde dehydrogenase, mitochondrial OS=Mus musculus GN=Aldh2 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 3.308e-42
Identity = 72/160 (45.00%), Postives = 96/160 (60.00%), Query Frame = 1
Query:   76 PEIKFPKLFINGEFVDSVSGKTFETIDPRTGEAIARIAEGDKEDVDLAVKAARQAFDHG-PWPRFSGAERRGIMLKFADLIXXXXXXXXXXXXPDAGKLHSWAKMGDIPGAANTLRYYAGAADKIHGEVLKMSRALQGYTLREPIGVVGHILPWNFPTTM 552
            PE+   ++FIN E+ D+VS KTF T++P TGE I ++AEG+KEDVD AVKAAR AF  G PW R   ++R  ++ + ADLI             D GK +  + + D+      LRYYAG ADK HG+ + +      YT  EP+GV G I+PWNFP  M
Sbjct:   34 PEVFCNQIFINNEWHDAVSRKTFPTVNPSTGEVICQVAEGNKEDVDKAVKAARAAFQLGSPWRRMDASDRGRLLYRLADLIERDRTYLAALETLDNGKPYVISYLVDLDMVLKCLRYYAGWADKYHGKTIPIDGDFFSYTRHEPVGVCGQIIPWNFPLLM 193          

HSP 2 Score: 56.6102 bits (135), Expect = 3.308e-42
Identity = 26/36 (72.22%), Postives = 29/36 (80.56%), Query Frame = 2
Query:  620 TPLIALYFAPLAKRAGVPDGVLNVVPGFGPTAGAAL 727
            TPL ALY A L K AG P GV+N+VPGFGPTAGAA+
Sbjct:  216 TPLTALYVANLIKEAGFPPGVVNIVPGFGPTAGAAI 251          
The following BLAST results are available for this feature:
BLAST of DY260256 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 346
Match NameE-valueIdentityDescription
AL2C4_ARATH1.727e-5662.92Aldehyde dehydrogenase family 2 member C4 OS=Arabi... [more]
AL2B7_ARATH2.818e-4448.15Aldehyde dehydrogenase family 2 member B7, mitocho... [more]
AL1A1_CHICK4.787e-4446.63Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
AL1A1_HUMAN2.345e-4347.24Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
ALDH2_HORSE8.809e-4344.44Aldehyde dehydrogenase, mitochondrial OS=Equus cab... [more]
AL1A1_MACFA1.148e-4246.63Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]
ALDH2_BOVIN1.948e-4244.44Aldehyde dehydrogenase, mitochondrial OS=Bos tauru... [more]
ALDH2_PONAB1.948e-4245.06Aldehyde dehydrogenase, mitochondrial OS=Pongo abe... [more]
ALDH2_HUMAN1.948e-4245.06Aldehyde dehydrogenase, mitochondrial OS=Homo sapi... [more]
ALDH2_MOUSE3.308e-4245.00Aldehyde dehydrogenase, mitochondrial OS=Mus muscu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260256 ID=DY260256; Name=DY260256; organism=Citrus clementina; type=EST; length=974bp
CACAAAGATAGAGATAGATAGAGAGAGATGGAGGGCAGTCTTAGCAATGG
AAGCTGCAAGTCTTTATTCAAGATGCCGGAGATCAAGTTCCCGAAGCTGT
TCATTAACGGAGAATTTGTTGATTCTGTTTCAGGGAAAACGTTTGAAACA
ATTGATCCAAGGACAGGAGAAGCCATAGCAAGAATTGCTGAAGGAGACAA
GGAGGATGTTGATCTTGCCGTCAAGGCAGCACGTCAGGCGTTTGATCACG
GTCCATGGCCACGTTTTTCTGGAGCCGAAAGGAGAGGGATAATGTTGAAG
TTTGCGGACTTAATTGAAGAACACGCAGAGGTATTAGCGGTGCTGGAAGC
TCCTGATGCTGGCAAATTGCACAGTTGGGCCAAAATGGGCGACATTCCAG
GAGCTGCTAATACCCTTCGTTACTATGCTGGTGCAGCTGATAAAATACAC
GGAGAGGTTCTAAAAATGTCTCGGGCGTTACAGGGCTACACGTTGCGTGA
GCCAATTGGCGTTGTTGGACACATCCTTCCCTGGAATTTTCCTACCACCA
TGTTTTTCCTGAAAGGTTAGCCCCTGCGTTAGCCGCTGGGTGCACCATGA
TTGTCAAGCCTGCTGAGCAACTCCCCTTATTGCCCTTTATTTTGCCCCTC
TTGCCAAGCGGGCTGGAGTACCTGATGGAGTGCTTAATGTTGTACCCGGA
TTTGGACCCACTGCCGGTGCCGCCCTCCCCCCCCCATATGGACATTGATA
AAATTAGTTTTACAGGGCCCACCGATGTCGGAACGCCAGTGGCGCAGGCC
CCCGCAAACAGCCACTCGAACCCCTTTTCCCACAATTAGGGGGCCAGCCA
CCTCTCCCGGTTTCTGATGAGGTTGATGCAAACCCGCCCCCAAACCTGGC
CCCTCCCGGCCACCCGGTTAAAAAGGGAAAAATTTGCGTGGCCACTTCCC
CCTGTTTTTCCCCCGGAAGGACTT
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