DY260263

Overview
NameDY260263
Unique NameDY260263
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length988
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260263 vs. ExPASy Swiss-Prot
Match: ODO2_DICDI (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Dictyostelium discoideum GN=odhB PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.178e-21
Identity = 49/129 (37.98%), Postives = 66/129 (51.16%), Query Frame = 1
Query:  337 FSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEGVXXXXXXXXXXXXXXXXXXXXSVEKQTPESEAAPAVKDKTP 723
            F S + D+V   VP MG+SI++GT+  + K  GD V +DE +  IETDKVTID+ +P +G I +L AKEGE V  G  +  I+K GE                         K     +AAPA K + P
Sbjct:   67 FYSSANDVV-IKVPSMGDSISEGTIVAWTKNVGDSVRVDEVVCSIETDKVTIDINAPVSGTIVELFAKEGENVTVGNDLYKIAK-GEVAAAPKVEAPKAAEAPKAAAPTPAPKAAETPKAAPAPKSEAP 193          

HSP 2 Score: 43.8986 bits (102), Expect = 8.178e-21
Identity = 28/60 (46.67%), Postives = 35/60 (58.33%), Query Frame = 3
Query:  807 ERRVPMTRLKKRVPTPLKNSQNTFALPTPFNEVDMTNLDETPPSNKKDAFPWKNRGGKLG 986
            E RV MTR+++R    LK+SQNT A+ T FNE+DM+ L        KD F  K  G K G
Sbjct:  210 ETRVKMTRIRQRTAQRLKDSQNTAAMLTTFNELDMSAL-MNMRKTYKDEFE-KKHGVKFG 267          
BLAST of DY260263 vs. ExPASy Swiss-Prot
Match: ODO2_MYCTU (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium tuberculosis GN=sucB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.206e-16
Identity = 37/70 (52.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  373 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVI 582
            +P +GES+T+GT+ ++LKQ GD VE+DEP+ ++ TDKV  ++ SP AGV+ K+IA+E +TVE G ++AVI
Sbjct:    7 MPALGESVTEGTVTRWLKQEGDTVELDEPLVEVSTDKVDTEIPSPAAGVLTKIIAQEDDTVEVGGELAVI 76          

HSP 2 Score: 73.559 bits (179), Expect = 2.047e-12
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = 1
Query:  352 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGE 597
            GD    ++P +GES+T+GT+ ++LK+ GD V++DEP+ ++ TDKV  ++ SP AGV+  + A E  TV  G ++A I  + +
Sbjct:  119 GDAKPVLMPELGESVTEGTVIRWLKKIGDSVQVDEPLVEVSTDKVDTEIPSPVAGVLVSISADEDATVPVGGELARIGVAAD 200          
BLAST of DY260263 vs. ExPASy Swiss-Prot
Match: ODO2_MYCBO (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Mycobacterium bovis GN=sucB PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 5.206e-16
Identity = 37/70 (52.86%), Postives = 56/70 (80.00%), Query Frame = 1
Query:  373 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVI 582
            +P +GES+T+GT+ ++LKQ GD VE+DEP+ ++ TDKV  ++ SP AGV+ K+IA+E +TVE G ++AVI
Sbjct:    7 MPALGESVTEGTVTRWLKQEGDTVELDEPLVEVSTDKVDTEIPSPAAGVLTKIIAQEDDTVEVGGELAVI 76          

HSP 2 Score: 73.559 bits (179), Expect = 2.047e-12
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = 1
Query:  352 GDLVDAVVPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGE 597
            GD    ++P +GES+T+GT+ ++LK+ GD V++DEP+ ++ TDKV  ++ SP AGV+  + A E  TV  G ++A I  + +
Sbjct:  119 GDAKPVLMPELGESVTEGTVIRWLKKIGDSVQVDEPLVEVSTDKVDTEIPSPVAGVLVSISADEDATVPVGGELARIGVAAD 200          
BLAST of DY260263 vs. ExPASy Swiss-Prot
Match: ODO2_YEAST (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Saccharomyces cerevisiae GN=KGD2 PE=1 SV=2)

HSP 1 Score: 63.1586 bits (152), Expect = 6.537e-16
Identity = 52/159 (32.70%), Postives = 73/159 (45.91%), Query Frame = 1
Query:  373 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVIS-----KSGEGVXXXXXXXXXXXXXXXXXXXXSVEKQTPESEAAPAVKDKTPL*TTSYSPKTYFTFKT--------LASNPRLP-PRTE 807
            VP M ES+T+G+L ++ K  GD ++ DE +A IETDK+ I+V SP +G + KL  K  +TV  G ++A +        G G                     S E+   + EAAP  K+  P    +   K     KT        +ASN   P PRTE
Sbjct:   78 VPPMAESLTEGSLKEYTKNVGDFIKEDELLATIETDKIDIEVNSPVSGTVTKLNFKPEDTVTVGEELAQVEPGEAPAEGSGESKPEPTEQAEPSQGVAARENSSEETASKKEAAPK-KEAAPKKEVTEPKKADQPKKTVSKAQEPPVASNSFTPFPRTE 235          

HSP 2 Score: 42.3578 bits (98), Expect = 6.537e-16
Identity = 27/60 (45.00%), Postives = 32/60 (53.33%), Query Frame = 3
Query:  807 ERRVPMTRLKKRVPTPLKNSQNTFALPTPFNEVDMTNLDETPPSNKKDAFPWKNRGGKLG 986
            E RV M R++ R+   LK SQNT A  T FNEVDM+ L E     K +    K  G K G
Sbjct:  235 ETRVKMNRMRLRIAERLKESQNTAASLTTFNEVDMSALMEMRKLYKDEII--KKTGTKFG 292          
BLAST of DY260263 vs. ExPASy Swiss-Prot
Match: ODO2_STAS1 (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=odhB PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.584e-15
Identity = 42/76 (55.26%), Postives = 58/76 (76.32%), Query Frame = 1
Query:  373 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 600
            VP + ESIT+GT+A++LKQ GD V+  E I ++ETDKV ++V S +AGV+Q+L+A EG+TVE G  IAV+   GEG
Sbjct:    6 VPELAESITEGTIAEWLKQVGDSVDKGEAIVELETDKVNVEVVSEEAGVLQELLANEGDTVEVGQAIAVV---GEG 78          
BLAST of DY260263 vs. ExPASy Swiss-Prot
Match: ODO2_BARVB (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Bartonella vinsonii subsp. berkhofii GN=sucB PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.873e-14
Identity = 36/77 (46.75%), Postives = 54/77 (70.13%), Query Frame = 1
Query:  373 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEGV 603
            VP +GES+T+ T+ K+ K+ G+ V IDEP+ ++ETDKVT++V SP AG + ++IAKEG+TVE  A +  +      V
Sbjct:    7 VPTLGESVTEATVGKWFKKLGEAVAIDEPLVELETDKVTVEVPSPVAGKLFEIIAKEGDTVEVNALLGAVEAGAASV 83          
BLAST of DY260263 vs. ExPASy Swiss-Prot
Match: ODO2_STAAB (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=odhB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.312e-14
Identity = 41/76 (53.95%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  373 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 600
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A EG+TVE G  IAVI   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAVI---GEG 78          
BLAST of DY260263 vs. ExPASy Swiss-Prot
Match: ODO2_STAES (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 12228) GN=odhB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.086e-13
Identity = 38/81 (46.91%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  358 LVDAVVPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 600
            + +  VP + ESIT+GT+A++LK  GD V+  E I ++ETDKV ++V S +AGV+ + +A+EG+TVE G  +AV+   GEG
Sbjct:    1 MAEVKVPELAESITEGTIAEWLKNVGDNVDKGEAILELETDKVNVEVVSEEAGVLSEQLAEEGDTVEVGQAVAVV---GEG 78          
BLAST of DY260263 vs. ExPASy Swiss-Prot
Match: ODO2_STAEQ (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=odhB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.086e-13
Identity = 38/81 (46.91%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  358 LVDAVVPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 600
            + +  VP + ESIT+GT+A++LK  GD V+  E I ++ETDKV ++V S +AGV+ + +A+EG+TVE G  +AV+   GEG
Sbjct:    1 MAEVKVPELAESITEGTIAEWLKNVGDNVDKGEAILELETDKVNVEVVSEEAGVLSEQLAEEGDTVEVGQAVAVV---GEG 78          
BLAST of DY260263 vs. ExPASy Swiss-Prot
Match: ODO2_STAAW (Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Staphylococcus aureus (strain MW2) GN=odhB PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.086e-13
Identity = 40/76 (52.63%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  373 VPFMGESITDGTLAKFLKQPGDRVEIDEPIAQIETDKVTIDVASPQAGVIQKLIAKEGETVEPGAKIAVISKSGEG 600
            VP + ESIT+GT+A++LK  GD VE  E I ++ETDKV ++V S +AGV+ + +A EG+TVE G  IA+I   GEG
Sbjct:    6 VPELAESITEGTIAEWLKNVGDSVEKGEAILELETDKVNVEVVSEEAGVLSEQLASEGDTVEVGQAIAII---GEG 78          
The following BLAST results are available for this feature:
BLAST of DY260263 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
ODO2_DICDI8.178e-2137.98Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_MYCTU5.206e-1652.86Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_MYCBO5.206e-1652.86Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_YEAST6.537e-1632.70Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAS12.584e-1555.26Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_BARVB4.873e-1446.75Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAB8.312e-1453.95Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAES1.086e-1346.91Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAEQ1.086e-1346.91Dihydrolipoyllysine-residue succinyltransferase co... [more]
ODO2_STAAW1.086e-1352.63Dihydrolipoyllysine-residue succinyltransferase co... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YO22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260263 ID=DY260263; Name=DY260263; organism=Citrus clementina; type=EST; length=988bp
CTCCGAGTCCTGTATAATTTGATCCCAGATTCCTTTTTATTCCTTCCCAT
CTAAAAAGAAAAATAAATAAAGCACATAGTTTTTTCGGAAATGATTTGGG
GAATTGTTCCCCGCAAAATCACTTCGGCTCAAGTGATTGGACCATCAGTG
TCAAAGATTGGGCCCAGATGTCACGCGACTGCGCAAAAGGAGGCTATACT
CACTTGCAGAGGTTTTCAGCGTGTTCAGCGTTCTAGCTATCACATTTTGT
CAGGGAATTATGTTTGTTCGACGCCAAGAAGCGAAGTAATTGAGCTGATA
CAGAAAGGATCTTTTATTGGATCGAGAAGTAGATTGTTTTCTTCAGATAG
TGGAGACCTGGTTGATGCTGTTGTTCCCTTCATGGGTGAATCCATTACTG
ATGGAACATTGGCGAAGTTTTTGAAGCAACCTGGAGATAGAGTTGAAATT
GATGAGCCCATTGCTCAAATTGAAACCGATAAGGTGACAATTGATGTGGC
TAGTCCTCAAGCCGGTGTTATCCAAAAGCTTATAGCCAAGGAAGGTGAAA
CTGTGGAACCAGGTGCAAAGATTGCTGTTATTTCAAAATCAGGTGAAGGT
GTTGCTCAAGCTGCTCCAGCAGAGAAAGCTGCTGCTCAGCCCCCCCCTGC
TGAAGAAAAGCCAAGTGTTGAGAAGCAAACTCCTGAGTCGGAAGCCGCCC
CTGCCGTAAAAGATAAAACCCCCCTCTGAACCACCTCCTACAGCCCAAAA
ACCTACTTCACCTTCAAAACCCTGGCTTCAAACCCCCGCCTCCCCCCCAG
GACCGAGAGAGACGGGTCCCTATGACCAGACTTAAGAAAAGGGTCCCCAC
CCCCCTGAAAAATTCTCAAAATACCTTTGCCCTGCCTACCCCCTTTAATG
AGGTTGATATGACTAACCTTGATGAAACCCCCCCCTCCAATAAAAAGGAT
GCCTTTCCTTGGAAAAACCGGGGGGGGAAATTGGGACC
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