DY260269

Overview
NameDY260269
Unique NameDY260269
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1052
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15339 contig Ccv1_Contig15339:121..1173. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY260269 vs. ExPASy Swiss-Prot
Match: Y4213_ARATH (UPF0480 protein At4g32130 OS=Arabidopsis thaliana GN=At4g32130 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 3.091e-38
Identity = 80/126 (63.49%), Postives = 96/126 (76.19%), Query Frame = 1 
Query:   67 DGFSISAPVQLPGMSLKAFGSPGGKASNVKVVLNGGEHVTFLRPDGYFSFQNMSAGTHLIEVAAIGYFFSPVRVDVSARHPGKVQAALTETRRGLNELVLEPLTEEQYYEIREPFSHNVSCEKPNG 444
            D ++I+  V++P  ++    +   K SN+KV+LNGG+HVTFLRPDGYF+F  + AGTHLIEV A+GYFFSPVRVDVSARH GKVQA LTETRR L ELVLEPL  EQYYE+REPFS     + P G
Sbjct:   32 DSYTITGRVRVPASTVIGHAA---KFSNIKVILNGGQHVTFLRPDGYFTFHKVPAGTHLIEVYALGYFFSPVRVDVSARHRGKVQATLTETRRSLTELVLEPLRAEQYYEMREPFSVMSIVKSPMG 154
The following BLAST results are available for this feature:
BLAST of DY260269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y4213_ARATH3.091e-3863.49UPF0480 protein At4g32130 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP11YP05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260269 ID=DY260269; Name=DY260269; organism=Citrus clementina; type=EST; length=1052bp
GTATTTTTCATCTTTTTATTTCCCCCTCTCCGTCCTTCGGCCGTTGCAGT
TTCCAGCGGGTCTGGTGATGGCTTCAGCATCAGTGCCCCTGTCCAACTTC
CCGGTATGAGTTTGAAAGCATTTGGCTCTCCTGGAGGAAAAGCATCGAAT
GTGAAAGTTGTACTCAATGGTGGCGAACATGTGACATTTCTGAGGCCCGA
TGGATATTTTTCATTCCAGAACATGTCCGCCGGGACTCATTTAATTGAAG
TGGCTGCAATTGGTTATTTCTTTTCTCCCGTCCGGGTTGATGTTAGTGCC
AGACACCCAGGCAAGGTTCAGGCAGCATTGACGGAAACCAGGAGGGGTCT
GAATGAATTGGTTTTAGAGCCATTGACAGAGGAGCAATATTACGAGATTA
GAGAACCTTTTTCCCATAATGTCTCTTGTGAAAAGCCCAATGGGTCCCAT
GATGGGATTTATGCTAGTGGTTGTGTTCCTTATGCCTAAATTAATGGAAA
ATATGGATCCTGAGGAGATGAGACGCGCTCAAGAGGAGATGAGGAGCCAA
GGGGTGCCCTCCCCACCACATTTGATACCACGAGCCGGAAGAAGCCACGC
CATTCCCTTGACAGTGCCTTCCCAAATTGGCTAGTGCCGCCCTTATTCCC
CACCCCCTTAGACCCATCGCACAACCCGCTGCTCTCCCCACCCACATGGC
CCCCGCACCAAATGATTTAACACCTTCCCTCCTCAAAAGACAACCGCTCG
GACACCCCTCACCCGCCCAAAAATCGGGTCCTTCTTCTCTCTGCCGACTC
TCCAATCTAACCCCCTCCTATTACCCCACCACCACCTCACCCCCAGCCCA
ACCACACCCACCACTCACCCTCCCCACCACACCACAGATCTCAACCCCTC
ATTTTCTCCTTTACTTTCCCTCCGACCCTCTCTAACCCTCTCCTCTCCCT
CACACCACCCCAACCACAACCACTCCCCCCCCCGCCACCCCCCCCACCCC
CCCCACTCACCCACCTACTCCCCTACCCCCCCGCCTCCCCCCAAACCCCA
CC
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