DY260272

Overview
NameDY260272
Unique NameDY260272
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1050
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260272_ssr587 microsatellite DY260272_ssr587:587..598. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HSP17_ARATH (17.4 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP17.4A PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 2.868e-52
Identity = 101/158 (63.92%), Postives = 119/158 (75.32%), Query Frame = 3
Query:   27 MSLLPSLFRGRRTNVFHPVSLDVWDPFHGFLSSALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            MSL+PS F GRRTNVF P SLDVWDPF GFL+  LTNAP  A++ + F NA++DW+ETP+AHVFKAD+PGL+          G ILQISGERS E EEK+D WHRVERSSGKF+RRFRLP NAKVE+VKASMENGVL+VT            +++ISG
Sbjct:    1 MSLVPSFFGGRRTNVFDPFSLDVWDPFEGFLTPGLTNAP--AKDVAAFTNAKVDWRETPEAHVFKADVPGLKKEEVKVEVEDGNILQISGERSSENEEKSDTWHRVERSSGKFMRRFRLPENAKVEEVKASMENGVLSVTVPKVQESKPEVKSVDISG 156          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HS17C_ARATH (17.6 kDa class I heat shock protein 3 OS=Arabidopsis thaliana GN=HSP17.6C PE=2 SV=2)

HSP 1 Score: 201.83 bits (512), Expect = 5.408e-51
Identity = 103/159 (64.78%), Postives = 119/159 (74.84%), Query Frame = 3
Query:   27 MSLLPSLFRGRRTNVFHPVSLDVWDPFHGFLS-SALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            MSL+PS+F GRRTNVF P SLDV+DPF GFL+ S L NAP  A + + F NA++DW+ETP+AHVFKADLPGLR          G ILQISGERS E EEKNDKWHRVERSSGKF RRFRLP NAK+E++KASMENGVL+VT            +I+ISG
Sbjct:    1 MSLIPSIFGGRRTNVFDPFSLDVFDPFEGFLTPSGLANAP--AMDVAAFTNAKVDWRETPEAHVFKADLPGLRKEEVKVEVEDGNILQISGERSNENEEKNDKWHRVERSSGKFTRRFRLPENAKMEEIKASMENGVLSVTVPKVPEKKPEVKSIDISG 157          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HS181_ARATH (18.1 kDa class I heat shock protein OS=Arabidopsis thaliana GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 1.205e-50
Identity = 102/160 (63.75%), Postives = 119/160 (74.38%), Query Frame = 3
Query:   27 MSLLPSLFRGRRTNVFHPVSLDVWDPFHGFL--SSALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            MSL+PS+F GRR+NVF P S D+WDPF GF   SSAL NA S AR+ + F NAR+DWKETP+AHVFKADLPGL+            +LQISGERSKE EEKNDKWHRVER+SGKF+RRFRLP NAK+E+VKA+MENGVLTV             +I+ISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSQDLWDPFEGFFTPSSALANA-STARDVAAFTNARVDWKETPEAHVFKADLPGLKKEEVKVEVEDKNVLQISGERSKENEEKNDKWHRVERASGKFMRRFRLPENAKMEEVKATMENGVLTVVVPKAPEKKPQVKSIDISG 159          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HSP11_DAUCA (17.8 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 199.519 bits (506), Expect = 2.684e-50
Identity = 99/158 (62.66%), Postives = 116/158 (73.42%), Query Frame = 3
Query:   27 MSLLPSLFRGRRTNVFHPVSLDVWDPFHGFLSSALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            MS++PS F GRR+NVF P SLDVWDPF  F     ++A  F +ET+ F N  IDWKETPQAHVFKADLPGL+          G++LQISGER+KE+EEKNDKWHRVERSSGKFLRRFRLP NAKV++VKA+M NGV+TVT            AI+ISG
Sbjct:    1 MSIIPSFFGGRRSNVFDPFSLDVWDPFKDF-PLVTSSASEFGKETAAFVNTHIDWKETPQAHVFKADLPGLKKEEVKVELEEGKVLQISGERNKEKEEKNDKWHRVERSSGKFLRRFRLPENAKVDEVKAAMANGVVTVTVPKVEIKKPEVKAIDISG 157          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HSP16_SOYBN (18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 1.332e-49
Identity = 102/163 (62.58%), Postives = 117/163 (71.78%), Query Frame = 3
Query:   27 MSLLPSLFRGRRTNVFHPVSLDVWDPFHGF-----LSSALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            MSL+P+ F GRR NVF P SLDVWDPF  F     LSSA  + P F+RE S F + R+DWKETP+AHVFKAD+PGL+           ++LQISGER+ E+E+KND WHRVERSSGKF+RRFRLP NAKVEQVKASMENGVLTVT            AIEISG
Sbjct:    1 MSLIPNFFGGRRNNVFDPFSLDVWDPFKDFPFPNTLSSA--SFPEFSRENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKVQIEDDKVLQISGERNVEKEDKNDTWHRVERSSGKFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 161          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HSP11_PEA (18.1 kDa class I heat shock protein OS=Pisum sativum GN=HSP18.1 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 3.876e-49
Identity = 98/158 (62.03%), Postives = 114/158 (72.15%), Query Frame = 3
Query:   27 MSLLPSLFRGRRTNVFHPVSLDVWDPFHGFLSSALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            MSL+PS F GRR+NVF P SLDVWDP   F  S  + + SF RE   F + R+DWKETP+AHVFKADLPGL+           R+LQISGERS E+E+KND+WHRVERSSGKFLRRFRLP NAK+++VKASMENGVLTVT            +IEISG
Sbjct:    1 MSLIPSFFSGRRSNVFDPFSLDVWDPLKDFPFSNSSPSASFPRENPAFVSTRVDWKETPEAHVFKADLPGLKKEEVKVEVEDDRVLQISGERSVEKEDKNDEWHRVERSSGKFLRRFRLPENAKMDKVKASMENGVLTVTVPKEEIKKAEVKSIEISG 158          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HSP12_MEDSA (18.2 kDa class I heat shock protein OS=Medicago sativa GN=HSP18.2 PE=2 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.473e-48
Identity = 95/158 (60.13%), Postives = 114/158 (72.15%), Query Frame = 3
Query:   27 MSLLPSLFRGRRTNVFHPVSLDVWDPFHGFLSSALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            MSL+PS F GRR+NVF P SLDVWDPF  F  +    + SF RE S F + R+DWKETP+AHVFKADLPG++           R+LQISGERS E+E+KND+WHR+ERSSGKF+RRFRLP NAK++QVKA+MENGVLTVT             I+ISG
Sbjct:    1 MSLIPSFFGGRRSNVFDPFSLDVWDPFKDFPFNNSALSASFPRENSAFVSTRVDWKETPEAHVFKADLPGMKKEEVKVEIEDDRVLQISGERSVEKEDKNDQWHRLERSSGKFMRRFRLPENAKMDQVKAAMENGVLTVTVPKEEVKKPEVKTIDISG 158          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HSP13_SOYBN (17.5 kDa class I heat shock protein OS=Glycine max GN=HSP17.5-M PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.628e-47
Identity = 97/158 (61.39%), Postives = 111/158 (70.25%), Query Frame = 3
Query:   27 MSLLPSLFRGRRTNVFHPVSLDVWDPFHGFLSSALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            MSL+PS+F GRR+NVF P SLDVWDPF  F         S + E S F N R+DWKETP+AHVF+AD+PGL+           R+LQISGER+ E+E+KND WHRVERSSG F+RRFRLP NAKVEQVKASMENGVLTVT            AIEISG
Sbjct:    1 MSLIPSIFGGRRSNVFDPFSLDVWDPFKDFHFPT-----SLSAENSAFVNTRVDWKETPEAHVFEADIPGLKKEEVKVQIEDDRVLQISGERNLEKEDKNDTWHRVERSSGNFMRRFRLPENAKVEQVKASMENGVLTVTVPKEEVKKPDVKAIEISG 153          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HSP12_DAUCA (18.0 kDa class I heat shock protein OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 2.127e-47
Identity = 94/159 (59.12%), Postives = 114/159 (71.70%), Query Frame = 3
Query:   27 MSLLPSLFRGRRTNVFHPVSLDVWDPFHGF-LSSALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            MS++PS F  RR+NV +P SLD+WDPF  + L ++   +  F +ET+ FAN  IDWKETPQAHVFKADLPGL+          G++LQISGER+KE+EEKN+KWHRVE SSGKFLRRFRLP NA V++VKA MENGVLTVT            +I ISG
Sbjct:    1 MSIIPSFFGSRRSNVLNPFSLDIWDPFQDYPLITSSGTSSEFGKETAAFANTHIDWKETPQAHVFKADLPGLKKEEVKVEVEEGKVLQISGERNKEKEEKNNKWHRVEFSSGKFLRRFRLPENANVDEVKAGMENGVLTVTVPKVEMKKPEVKSIHISG 159          
BLAST of DY260272 vs. ExPASy Swiss-Prot
Match: HSP11_SOYBN (17.3 kDa class I heat shock protein OS=Glycine max GN=HSP17.3-B PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 1.379e-46
Identity = 95/158 (60.13%), Postives = 112/158 (70.89%), Query Frame = 3
Query:   27 MSLLPSLFRGRRTNVFHPVSLDVWDPFHGFLSSALTNAPSFARETSPFANARIDWKETPQAHVFKADLPGLRXXXXXXXXXXGRILQISGERSKEQEEKNDKWHRVERSSGKFLRRFRLPHNAKVEQVKASMENGVLTVTXXXXXXXXXXXXAIEISG 500
            MSL+PS F GRR++VF P SLDVWDPF  F   +     S + E S F + R+DWKETP+AHVFKAD+PGL+          GR+LQISGER+ E+E+KND WHRVERSSGK +RRFRLP NAKV+QVKASMENGVLTVT            AI+ISG
Sbjct:    1 MSLIPSFFGGRRSSVFDPFSLDVWDPFKDFPFPS-----SLSAENSAFVSTRVDWKETPEAHVFKADIPGLKKEEVKLEIQDGRVLQISGERNVEKEDKNDTWHRVERSSGKLVRRFRLPENAKVDQVKASMENGVLTVTVPKEEIKKPDVKAIDISG 153          
The following BLAST results are available for this feature:
BLAST of DY260272 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
HSP17_ARATH2.868e-5263.9217.4 kDa class I heat shock protein OS=Arabidopsis... [more]
HS17C_ARATH5.408e-5164.7817.6 kDa class I heat shock protein 3 OS=Arabidops... [more]
HS181_ARATH1.205e-5063.7518.1 kDa class I heat shock protein OS=Arabidopsis... [more]
HSP11_DAUCA2.684e-5062.6617.8 kDa class I heat shock protein OS=Daucus caro... [more]
HSP16_SOYBN1.332e-4962.5818.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP11_PEA3.876e-4962.0318.1 kDa class I heat shock protein OS=Pisum sativ... [more]
HSP12_MEDSA1.473e-4860.1318.2 kDa class I heat shock protein OS=Medicago sa... [more]
HSP13_SOYBN1.628e-4761.3917.5 kDa class I heat shock protein OS=Glycine max... [more]
HSP12_DAUCA2.127e-4759.1218.0 kDa class I heat shock protein OS=Daucus caro... [more]
HSP11_SOYBN1.379e-4660.1317.3 kDa class I heat shock protein OS=Glycine max... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YP17FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260272 ID=DY260272; Name=DY260272; organism=Citrus clementina; type=EST; length=1050bp
TTTAATTAGCCTCCCCGTTTGCCCTAATGTCCCTCCTTCCAAGCCTCTTC
CGTGGCCGAAGAACCAACGTGTTCCATCCAGTTTCCTTAGATGTATGGGA
TCCTTTCCACGGGTTCTTGTCCTCTGCCCTTACCAACGCCCCCTCCTTCG
CTAGGGAAACATCCCCATTCGCCAATGCAAGAATTGACTGGAAAGAGACT
CCTCAGGCTCACGTATTCAAAGCTGATCTTCCCGGGCTGAGGAAAGAAGA
AGTAAAAGTTGAGGTTGAAGAGGGCAGGATTCTGCAGATAAGCGGAGAGA
GGAGCAAGGAGCAGGAAGAGAAGAATGACAAGTGGCATCGCGTCGAGAGG
AGCAGTGGCAAGTTCCTGAGGAGGTTCAGGTTGCCCCACAATGCTAAGGT
GGAACAGGTTAAGGCCAGCATGGAGAATGGTGTGCTCACAGTCACCGTTC
CTAAACAGGAGGAGAAGAAACCTGAAGTTAAGGCTATTGAGATCTCTGGC
TAAGTGATAACTGTAAATGTTTTCAAGATAGTGTCTTTGGTTTGCTAATA
AATTTGGTACGAAAGCAAAGCCCTTGTGTGTTTGTATGTGTGTGTGTGTT
TGTTTTCTTCCCCTCCCCCTGTTTAATTTGATGTGATTATGTTTGTGTGT
TTGCAAGAGCTTCCGGAGCCAGTCTCCAGCCTTGTAACTAGTTTTTTAAA
TGATAAAAAAGTGTGATGCCATAAAATATATTTTGTAATGCCAGTAAAAA
AAAAAAAAAAAAAAAAAAAAAACCCCACTTTCCTGTACAAATTGGCCTTA
AAAAAAAGCCTTGCCTATCCATTTTGTGCCCCCAACCGGTCCCCATCCTT
CCAAATAAATCCTTATTTCCCCCCCCCCCGAAACCCCCCCAAAGGGAGTC
CCATTACCAGGGGCCCACCCGTTTCCCGGGCCCCCCCCGGCCCCCGGTCC
CAAAAATCCCCATGTTTACCTTCCCCCAAAAAAAAAATATTACCCCCCCG
GTTAAAAAAAACCCCCCCCGCCCCCCCAAGGAAACCCCCCCTTTTATCCC
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