DY260275

Overview
NameDY260275
Unique NameDY260275
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length989
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS103_ARATH (40S ribosomal protein S10-3 OS=Arabidopsis thaliana GN=RPS10C PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.929e-43
Identity = 82/97 (84.54%), Postives = 92/97 (94.85%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 313
            +II E NRKEI +YLF+EGVC+AKKD+NLAK P IDVPNLQVIKLMQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:    1 MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10_ORYSJ (40S ribosomal protein S10 OS=Oryza sativa subsp. japonica GN=RPS10 PE=2 SV=2)

HSP 1 Score: 174.096 bits (440), Expect = 1.113e-42
Identity = 82/97 (84.54%), Postives = 90/97 (92.78%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 313
            +IIP+KNR EI +YLFQEGV YAKKDYNLAK P+IDVPNLQVIKLMQSFKS+EYVRETF+W +YYWYLTNDGIE LR YLNLPSEIVPATLKKSA+P
Sbjct:    1 MIIPKKNRNEICKYLFQEGVLYAKKDYNLAKHPQIDVPNLQVIKLMQSFKSKEYVRETFSWQYYYWYLTNDGIEHLRNYLNLPSEIVPATLKKSARP 97          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS101_ARATH (40S ribosomal protein S10-1 OS=Arabidopsis thaliana GN=RPS10A PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.899e-42
Identity = 80/97 (82.47%), Postives = 91/97 (93.81%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 313
            +II E NR+EI +YLF+EGVC+AKKD+NL K P IDVPNLQVIKLMQSFKS+EYVRETFAWMHYYW+LTN+GIEFLRTYLNLPS++VPATLKKSAKP
Sbjct:    1 MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLIDVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIEFLRTYLNLPSDVVPATLKKSAKP 97          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS102_ARATH (40S ribosomal protein S10-2 OS=Arabidopsis thaliana GN=RPS10B PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 3.705e-38
Identity = 76/98 (77.55%), Postives = 88/98 (89.80%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 313
            +II E NR+EI +YLF+EGV +AKKD+NL + P I+ VPNLQVIKLMQSFKS+EYVRETFAWMHYYW+LTN+GI+FLRTYLNLPSEIVPATLKK  KP
Sbjct:    1 MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETFAWMHYYWFLTNEGIDFLRTYLNLPSEIVPATLKKQQKP 98          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10_SPOFR (40S ribosomal protein S10 OS=Spodoptera frugiperda GN=RpS10 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 6.335e-30
Identity = 60/97 (61.86%), Postives = 80/97 (82.47%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEID-VPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAK 310
            +++P++NR  I +YLF+EGV  AKKDY+  K P+++ +PNLQVIK MQS KSR YV+E FAW H+YWYLTN+GIE+LR +L+LP EIVPATLK+S +
Sbjct:    1 MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHPDLEKIPNLQVIKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIEYLRIFLHLPPEIVPATLKRSVR 97          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10_LUMRU (40S ribosomal protein S10 OS=Lumbricus rubellus GN=RPS10 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 1.560e-28
Identity = 58/97 (59.79%), Postives = 75/97 (77.32%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEIDVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 313
            +++ +KNR  I +YLF+EGV  AKKD++L K  EIDVPNL VI+ MQS  SR YV+E F W HYYWYL N+GI++LR +L+LP EIVPATLK+  +P
Sbjct:    1 MLMSKKNRVMIYEYLFKEGVLVAKKDFHLPKHGEIDVPNLHVIRAMQSLVSRGYVKEQFCWRHYYWYLQNEGIQYLRDFLHLPPEIVPATLKRQTRP 97          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10_RAT (40S ribosomal protein S10 OS=Rattus norvegicus GN=Rps10 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.725e-27
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 304
            +++P+KNR  I + LF+EGV  AKKD ++ K PE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10_MOUSE (40S ribosomal protein S10 OS=Mus musculus GN=Rps10 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.725e-27
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 304
            +++P+KNR  I + LF+EGV  AKKD ++ K PE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10_ICTPU (40S ribosomal protein S10 OS=Ictalurus punctatus GN=rps10 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.725e-27
Identity = 58/100 (58.00%), Postives = 78/100 (78.00%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKSAKP 313
            +++P+KNR  I + LF+EGV  AKKD +LAK PE+   +VPNL V+K MQS KS  YV+E FAW H+YWYLTN+GI++LR +L+LP EIVPATL++  +P
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHLAKHPELADKNVPNLHVMKAMQSLKSCGYVKEQFAWRHFYWYLTNEGIQYLRDFLHLPPEIVPATLRRQTRP 100          
BLAST of DY260275 vs. ExPASy Swiss-Prot
Match: RS10_HUMAN (40S ribosomal protein S10 OS=Homo sapiens GN=RPS10 PE=1 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.725e-27
Identity = 58/97 (59.79%), Postives = 77/97 (79.38%), Query Frame = 2
Query:   23 LIIPEKNRKEIRQYLFQEGVCYAKKDYNLAKPPEI---DVPNLQVIKLMQSFKSREYVRETFAWMHYYWYLTNDGIEFLRTYLNLPSEIVPATLKKS 304
            +++P+KNR  I + LF+EGV  AKKD ++ K PE+   +VPNL V+K MQS KSR YV+E FAW H+YWYLTN+GI++LR YL+LP EIVPATL++S
Sbjct:    1 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRS 97          
The following BLAST results are available for this feature:
BLAST of DY260275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
RS103_ARATH2.929e-4384.5440S ribosomal protein S10-3 OS=Arabidopsis thalian... [more]
RS10_ORYSJ1.113e-4284.5440S ribosomal protein S10 OS=Oryza sativa subsp. j... [more]
RS101_ARATH1.899e-4282.4740S ribosomal protein S10-1 OS=Arabidopsis thalian... [more]
RS102_ARATH3.705e-3877.5540S ribosomal protein S10-2 OS=Arabidopsis thalian... [more]
RS10_SPOFR6.335e-3061.8640S ribosomal protein S10 OS=Spodoptera frugiperda... [more]
RS10_LUMRU1.560e-2859.7940S ribosomal protein S10 OS=Lumbricus rubellus GN... [more]
RS10_RAT1.725e-2759.7940S ribosomal protein S10 OS=Rattus norvegicus GN=... [more]
RS10_MOUSE1.725e-2759.7940S ribosomal protein S10 OS=Mus musculus GN=Rps10... [more]
RS10_ICTPU1.725e-2758.0040S ribosomal protein S10 OS=Ictalurus punctatus G... [more]
RS10_HUMAN1.725e-2759.7940S ribosomal protein S10 OS=Homo sapiens GN=RPS10... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP11YP22FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260275 ID=DY260275; Name=DY260275; organism=Citrus clementina; type=EST; length=989bp
GCTCAATCCTCCCTTCCCAACCCTGATTATTCCAGAGAAGAACCGCAAAG
AAATCCGCCAGTACCTCTTCCAAGAGGGAGTATGCTATGCAAAGAAGGAT
TATAATCTTGCGAAGCCCCCAGAAATCGATGTTCCAAACCTGCAGGTGAT
TAAGCTGATGCAGAGCTTCAAATCTAGGGAGTATGTTCGTGAGACATTTG
CGTGGATGCACTATTATTGGTACCTTACGAATGATGGGATTGAGTTTTTG
AGGACTTACCTCAATCTTCCATCAGAAATTGTTCCTGCTACCTTGAAGAA
ATCCGCTAAGCCAGCTGGTCGCCCGATGGGTGGACCTGGTGGTGATCGTC
CAAGGGGCCCACCTCGTTTTGATGGAGACCGACCGAGGTTTGGTGACCGT
GAAGGGTACCGTGGTGGTCCTCGTGGTGGTGACTTTGGTGGTGAGAAAGG
TGGAGCCCCTGCTGATTTCCAGCCATCCTTCAGGGGTTCTGGTGGAAGAC
CTGGTTTTGGTCGCGGAGGTGGAGGCTATGGTGCAGCTCCATCAGGTTCA
GGATTTCCTTGAAGTTAAGGCCGGTTTGCTTAGTTCATGTTTGCCCCCAA
ATTAGTGTTTCAAGTCCTTAGAACCAGTCTAATGCCCTTGTTGAATTTTC
TATAGTATTTCCGTAAGCCTTTAAGTACAATATTAAGTTCATTATGAAAT
CCTCCGTTTTTTCCCCCCCATGGCTGTTGGTTTAAATGGAACCCCCCCCA
CCATTTGCCTTAAAAAAAAAAAAAAAAAAAAACCCCCACTTCCTTTTACC
AAGGTTGGCCTTATAAAAAAGCCTTGCCTTACCCTTCGTTCGCCCCCAAC
CCGGCCACCACCCCCCCAATACAATCCTCTCTTCCCCCCCCCCCCCGAAT
CCCCCCTAAAACCACGCCAACAACCCGGGGCACCAACCGGTTCCCCGGCA
GCCTTGCCGCCCGGGCTCCAAAATTCCTGCAACCTAACC
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