DY260277

Overview
NameDY260277
Unique NameDY260277
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length852
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig3760 contig Ccv1_Contig3760:1..849. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_ONOVI (Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.560e-47
Identity = 92/99 (92.93%), Postives = 95/99 (95.96%), Query Frame = 1 
Query:  109 EA*HEKRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 405
            EA  +KRELVFKEDGQEYA VLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILK MPDEARLLKAYGELP++TRLN
Sbjct:   18 EADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLN 116
[Close]
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_WHEAT (Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 183.341 bits (464), Expect = 1.460e-45
Identity = 87/99 (87.88%), Postives = 93/99 (93.94%), Query Frame = 1 
Query:  109 EA*HEKRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 405
            EA  +KRELVFKEDGQEYA V RMLGNGRCEA+C+DGTKRLCHIRGKMHKKVWIAAGDI+LVGLRDYQDDKADVILKYM DEARLLKAYGELP++ RLN
Sbjct:   18 EADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTKRLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLN 116
[Close]
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1AX_PONAB (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 2.258e-38
Identity = 76/95 (80.00%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:  121 EKRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 405
            EKRELVFKEDGQEYA V++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1AX_MOUSE (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ay PE=2 SV=3)

HSP 1 Score: 159.458 bits (402), Expect = 2.258e-38
Identity = 76/95 (80.00%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:  121 EKRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 405
            EKRELVFKEDGQEYA V++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1AX_HUMAN (Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2)

HSP 1 Score: 159.458 bits (402), Expect = 2.258e-38
Identity = 76/95 (80.00%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:  121 EKRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 405
            EKRELVFKEDGQEYA V++MLGNGR EAMC DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1AY_PANTR (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3)

HSP 1 Score: 158.303 bits (399), Expect = 5.030e-38
Identity = 75/95 (78.95%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:  121 EKRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 405
            EKRELVFKEDGQEYA V++MLGNGR EA+C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1AY_HUMAN (Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo sapiens GN=EIF1AY PE=1 SV=4)

HSP 1 Score: 158.303 bits (399), Expect = 5.030e-38
Identity = 75/95 (78.95%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:  121 EKRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 405
            EKRELVFKEDGQEYA V++MLGNGR EA+C DG KRLCHIRGK+ KKVWI   DIILVGLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_RAT (Eukaryotic translation initiation factor 1A OS=Rattus norvegicus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 6.569e-38
Identity = 74/95 (77.89%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:  121 EKRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 405
            EKRELVFKEDGQEYA V++MLGNGR EAMC DG +RLCHIRGK+ KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_MOUSE (Eukaryotic translation initiation factor 1A OS=Mus musculus GN=Eif1a PE=2 SV=3)

HSP 1 Score: 157.918 bits (398), Expect = 6.569e-38
Identity = 74/95 (77.89%), Postives = 82/95 (86.32%), Query Frame = 1 
Query:  121 EKRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 405
            EKRELVFKEDGQEYA V++MLGNGR EAMC DG +RLCHIRGK+ KKVWI   DIIL+GLRDYQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVRRLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
[Close]
BLAST of DY260277 vs. ExPASy Swiss-Prot
Match: IF1A_RABIT (Eukaryotic translation initiation factor 1A OS=Oryctolagus cuniculus GN=EIF1A PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.789e-35
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = 1 
Query:  121 EKRELVFKEDGQEYAPVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 405
            EKRELVFKEDGQEYA V++MLGNGR EAM  DG KRL HIRGK+ KKVWI   DIILVGLR+YQD+KADVILKY  DEAR LKAYGELPE  ++N
Sbjct:   22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVKRLFHIRGKLRKKVWINTSDIILVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116
The following BLAST results are available for this feature:
BLAST of DY260277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
IF1A_ONOVI1.560e-4792.93Eukaryotic translation initiation factor 1A OS=Ono... [more]
IF1A_WHEAT1.460e-4587.88Eukaryotic translation initiation factor 1A OS=Tri... [more]
IF1AX_PONAB2.258e-3880.00Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_MOUSE2.258e-3880.00Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AX_HUMAN2.258e-3880.00Eukaryotic translation initiation factor 1A, X-chr... [more]
IF1AY_PANTR5.030e-3878.95Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1AY_HUMAN5.030e-3878.95Eukaryotic translation initiation factor 1A, Y-chr... [more]
IF1A_RAT6.569e-3877.89Eukaryotic translation initiation factor 1A OS=Rat... [more]
IF1A_MOUSE6.569e-3877.89Eukaryotic translation initiation factor 1A OS=Mus... [more]
IF1A_RABIT1.789e-3576.84Eukaryotic translation initiation factor 1A OS=Ory... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YA01FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260277 ID=DY260277; Name=DY260277; organism=Citrus clementina; type=EST; length=852bp
TGATTTCCATCCTGCTGCCTTTTAACTCCCCCACTCCCCCTCCCCCCCCA
AGAAACCCTGCCCAAGAATAAGGGAAAGGGAGGAAAGAACAGGAAGAGGG
GAAAGAATGAAGCCTGACACGAGAAGCGTGAGCTTGTCTTCAAGGAAGAC
GGACAGGAATATGCCCCAGTCCTTCGTATGCTCGGCAATGGTCGGTGTGA
AGCTATGTGCATCGATGGAACCAAGCGTCTTTGCCACATCCGTGGGAAGA
TGCACAAAAAGGTTTGGATTGCAGCTGGTGATATAATACTTGTTGGCCTA
CGTGATTATCAGGATGACAAGGCTGATGTCATCCTCAAGTATATGCCCGA
CGAGGCAAGGCTTCTGAAGGCTTATGGTGAACTTCCAGAGAGTACCCGTC
TCAATGAGGGCATTGCTGGTGGTCTTGATGAAGAGGATGATGGCGCTGAT
AATGATTACATCGAGTTTGAAGACGAAGATATTGATAAGATCTAGGCTCC
GAGAATCGACTCTGTCTGGGGTTTATGTTCAATATTTAGCAAAAATGGAG
TATGCCAATGTATTGGTTACTTAAAAGCTGAAAATATGTGTTTGCAGCTT
ATATATTTGGAATTTTTAATGGTGAGCCTGTCATATTTTGTGTAACGCCT
ATTACTTGCTTATTAATTTTGTTTAGTTCCGCCCCTTTTTTGAAGTGGTA
TTTCCAGAATGGAATCCTATACCGGTATGGTGCCAATCCTTTATGTCCAT
AATAATTTGTTGTGCCAATTAGAAGACGGGTAAATGGCCCGAATCTTTTT
TTCTAATTTGGGGTAAAAAAAAAAAAAAAAAAAACCCCAACTTTTTGGAC
CA
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