DY260280

Overview
NameDY260280
Unique NameDY260280
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1145
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260280_ssr469 microsatellite DY260280_ssr469:469..480. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig14876 contig Ccv1_Contig14876:11..1155. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260280 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 5.957e-22
Identity = 71/197 (36.04%), Postives = 87/197 (44.16%), Query Frame = 1
Query:  175 RLTQEQELALMVAALENVVVGN----PDNDFSPDIFRFQDWXXXXXXXXXXXXXXXXXXXXXFGNAMLP--PADTCQVCNIQGCLGCNYFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------NYRGVRQRPWGKWAAEIRDPRRATRVWLGTFHTXXXXXXXXXXXXXXFRGPRAQLNFPF 720
            +L+ EQEL+++V+AL++V+ G     P   FS D                              +A +P   +DTCQVC I+GCLGCNYF                                                 YRGVRQRPWGK+AAEIRDP+RATRVWLGTF T              FRGPRA+LNFPF
Sbjct:   23 QLSPEQELSVIVSALQHVISGENETAPCQGFSSDSTVI--------------------------SAGMPRLDSDTCQVCRIEGCLGCNYFFAPNQRIEKNHQQEEEITSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNFPF 193          
BLAST of DY260280 vs. ExPASy Swiss-Prot
Match: RAP26_ARATH (Ethylene-responsive transcription factor RAP2-6 OS=Arabidopsis thaliana GN=RAP2-6 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 7.053e-15
Identity = 37/57 (64.91%), Postives = 40/57 (70.18%), Query Frame = 1
Query:  547 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFHTXXXXXXXXXXXXXXFRGPRAQLNFP 717
            YRGVRQRPWGKWAAEIRDP +ATRVWLGTF T              FRG +A+LNFP
Sbjct:   61 YRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDAAALRFRGSKAKLNFP 117          
BLAST of DY260280 vs. ExPASy Swiss-Prot
Match: EF112_ARATH (Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 9.212e-15
Identity = 37/58 (63.79%), Postives = 40/58 (68.97%), Query Frame = 1
Query:  544 NYRGVRQRPWGKWAAEIRDPRRATRVWLGTFHTXXXXXXXXXXXXXXFRGPRAQLNFP 717
            NYRGVRQRPWGKWAAEIRDP +A RVWLGTF T              FRG +A+LNFP
Sbjct:   69 NYRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFP 126          
BLAST of DY260280 vs. ExPASy Swiss-Prot
Match: EF110_ARATH (Ethylene-responsive transcription factor ERF110 OS=Arabidopsis thaliana GN=ERF110 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 2.052e-14
Identity = 37/57 (64.91%), Postives = 39/57 (68.42%), Query Frame = 1
Query:  547 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFHTXXXXXXXXXXXXXXFRGPRAQLNFP 717
            YRGVRQRPWGKWAAEIRDP RA RVWLGTF T              FRG +A+LNFP
Sbjct:   77 YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAAARAYDEAALRFRGNKAKLNFP 133          
BLAST of DY260280 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.680e-14
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 1
Query:  544 NYRGVRQRPWGKWAAEIRDPRRATRVWLGTFHTXXXXXXXXXXXXXXFRGPRAQLNFP 717
            +YRGVRQRPWGKWAAEIRDP++A RVWLGTF T              F+G +A+LNFP
Sbjct:   89 HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNFP 146          
BLAST of DY260280 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.680e-14
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 1
Query:  544 NYRGVRQRPWGKWAAEIRDPRRATRVWLGTFHTXXXXXXXXXXXXXXFRGPRAQLNFP 717
            +YRGVRQRPWGKWAAEIRDP++A RVWLGTF T              F+G +A+LNFP
Sbjct:   38 HYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNFP 95          
BLAST of DY260280 vs. ExPASy Swiss-Prot
Match: RAP23_ARATH (Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 3.501e-14
Identity = 35/62 (56.45%), Postives = 41/62 (66.13%), Query Frame = 1
Query:  547 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFHTXXXXXXXXXXXXXXFRGPRAQLNFPFPHSP 732
            YRG+R+RPWGKWAAEIRDPR+  RVWLGTF+T               RG +A+LNFP  H P
Sbjct:   79 YRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAAMAYDVAAKQIRGDKAKLNFPDLHHP 140          
BLAST of DY260280 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 3.501e-14
Identity = 35/58 (60.34%), Postives = 41/58 (70.69%), Query Frame = 1
Query:  544 NYRGVRQRPWGKWAAEIRDPRRATRVWLGTFHTXXXXXXXXXXXXXXFRGPRAQLNFP 717
            +YRGVRQRPWGKWAAEIRDP++A RVWLGTF T              F+G +A+LNFP
Sbjct:   91 HYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFP 148          
BLAST of DY260280 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 7.798e-14
Identity = 36/59 (61.02%), Postives = 38/59 (64.41%), Query Frame = 1
Query:  547 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFHTXXXXXXXXXXXXXXFRGPRAQLNFPFP 723
            +RGVRQRPWGKWAAEIRDP R  RVWLGTF T               RGP A+LNFP P
Sbjct:   87 FRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNFPPP 145          
BLAST of DY260280 vs. ExPASy Swiss-Prot
Match: RAP22_ARATH (Ethylene-responsive transcription factor RAP2-2 OS=Arabidopsis thaliana GN=RAP2-2 PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 1.330e-13
Identity = 34/66 (51.52%), Postives = 43/66 (65.15%), Query Frame = 1
Query:  547 YRGVRQRPWGKWAAEIRDPRRATRVWLGTFHTXXXXXXXXXXXXXXFRGPRAQLNFPFPHSPTVAT 744
            YRG+RQRPWGKWAAEIRDPR+ +R WLGTF T               RG +A++NFP   +P+V +
Sbjct:  128 YRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARRIRGTKAKVNFPEEKNPSVVS 193          
The following BLAST results are available for this feature:
BLAST of DY260280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 34
Match NameE-valueIdentityDescription
EF109_ARATH5.957e-2236.04Ethylene-responsive transcription factor ERF109 OS... [more]
RAP26_ARATH7.053e-1564.91Ethylene-responsive transcription factor RAP2-6 OS... [more]
EF112_ARATH9.212e-1563.79Ethylene-responsive transcription factor ERF112 OS... [more]
EF110_ARATH2.052e-1464.91Ethylene-responsive transcription factor ERF110 OS... [more]
EF114_ARATH2.680e-1460.34Ethylene-responsive transcription factor ERF114 OS... [more]
EF113_ARATH2.680e-1460.34Ethylene-responsive transcription factor ERF113 OS... [more]
RAP23_ARATH3.501e-1456.45Ethylene-responsive transcription factor RAP2-3 OS... [more]
EF115_ARATH3.501e-1460.34Ethylene-responsive transcription factor ERF115 OS... [more]
CRF1_ARATH7.798e-1461.02Ethylene-responsive transcription factor CRF1 OS=A... [more]
RAP22_ARATH1.330e-1351.52Ethylene-responsive transcription factor RAP2-2 OS... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YA05FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260280 ID=DY260280; Name=DY260280; organism=Citrus clementina; type=EST; length=1145bp
CATTCCCGAGCCCACACGAACACCCGAACAACTGAAACATAAGGAAAAAA
AAAAAAAAAAAAAAAAAAGAAATAAGAAAATAAATCCACCACGAAGATGC
CAAGATCCCCAAAGCGACAGAGATTCCGCGCCGTTTCCCCCGCCCACAAC
CCGCAGCCGTCCCCTCCGCCGCGTCGTCTCACCCAAGAGCAAGAACTCGC
CCTCATGGTCGCAGCGCTCGAAAACGTCGTCGTCGGAAACCCAGACAACG
ATTTCTCCCCCGATATTTTTCGATTTCAAGATTGGACGGCGTCTAACGCA
GCAGCCATCGCCTCCACGTCCACGAGTTATAATAACCACAACACTAATTT
TGGAAATGCGATGCTACCTCCTGCCGACACGTGTCAAGTGTGCAACATTC
AAGGATGTTTGGGATGCAATTATTTCCCGCCAAATAATAACCATTACCCC
CACCAACAACAACAGCCTCAGCAGCAGCAGCACCAACGGCAAAAGAAAGC
AGCAGCTGGTAGCAGCGGCGCGGGAAAGAGGAGAGGGAAGAAGAATTACA
GAGGGGTGAGGCAGAGGCCGTGGGGAAAATGGGCGGCTGAGATTCGTGAC
CCGAGGAGGGCGACCCGTGTCTGGCTGGGGACGTTCCACACGGCGGAGGA
GGCAGCGAGGGCGTACGATAAGGCCGCCGTTGAGTTCCGTGGGCCCCGGG
CCCAGCTTAATTTCCCATTTCCCCATAGCCCGACGGTGGCCACAGCCTAC
CAAGCGCCACCCGCAGGGGGAGTCCTCCCCTTCCCCCCCCCCCCACCAGA
TGGGGGCCCCAGAACCCCAATCCAAGTGGTGCAAGAACCAATATAAATAA
TGGGAATTCGGCGCCCGCCACCAACCCAGGGGGGATCCAAATCCAAAGGA
CTTTGGGGAGAAGAATGGAGAAAACCAAATTCCCCCCGGGAAGACCCAGA
ATGGTTTTTGGCCCCCCTTCCCCCCACCCCCCCCAAACCGGCCCCCGGCC
CTCACTCCCGAATAAATAAATTAAAAAAATAAAAGGGTTTTTTTGTTTTC
CCCCCGTTTTTTTTTTAAAAAAAAAAAATTTATTTTATTTCCCGGTTTTT
AACCCCCTTTTTCTCCCCCCCCTTTTTTTTTTTTGTTTTCCTTCT
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