DY260282

Overview
NameDY260282
Unique NameDY260282
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1161
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260282_ssr11 microsatellite DY260282_ssr11:11..22. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig1471 contig Ccv1_Contig1471:1..1161. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260282 vs. ExPASy Swiss-Prot
Match: AB20I_ARATH (ABC transporter I family member 20 OS=Arabidopsis thaliana GN=ABCI20 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 6.870e-98
Identity = 146/194 (75.26%), Postives = 158/194 (81.44%), Query Frame = 1
Query:   22 MALMENSKP---TVEIHPLKFXXXXXXXXXXXXXXXLIHDFPPPSHAGDRCPLVGSHGAGKTTILKIIGGKHMVEPEMVKALGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDINLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 594
            MA+ E  K    TVEI  L+F               LI DF    ++ DRC LVGS+GAGKTTILKI+GGKHMVEP MV+ LGRSAFHDT LTSSGDL YLGGEWRR+VAFAGFEVPIQMD+SAEKMIFGVAGIDPQRR ELIKVLDI++SWR+HKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD
Sbjct:    1 MAVTEEEKKRNSTVEISGLRFTYPGIDGHPPPGSKPLIEDFSITLNSSDRCLLVGSNGAGKTTILKILGGKHMVEPHMVRVLGRSAFHDTGLTSSGDLCYLGGEWRRDVAFAGFEVPIQMDISAEKMIFGVAGIDPQRRDELIKVLDIDISWRLHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 194          

HSP 2 Score: 83.5741 bits (205), Expect = 6.870e-98
Identity = 38/47 (80.85%), Postives = 44/47 (93.62%), Query Frame = 3
Query:  651 ATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKEA*QLSLMRTVESW 791
            ATHIFDGLE+WP+HIVYVA+GKLQLA+PM+KVKE  + SLMRTVESW
Sbjct:  213 ATHIFDGLEDWPTHIVYVANGKLQLALPMEKVKETSKKSLMRTVESW 259          

HSP 3 Score: 36.5798 bits (83), Expect = 6.870e-98
Identity = 16/18 (88.89%), Postives = 17/18 (94.44%), Query Frame = 2
Query:  596 LLRFLRKECEERGAPIIY 649
            LL+FLRKECEERGA IIY
Sbjct:  195 LLKFLRKECEERGATIIY 212          
BLAST of DY260282 vs. ExPASy Swiss-Prot
Match: AB21I_ARATH (ABC transporter I family member 21 OS=Arabidopsis thaliana GN=ABCI21 PE=2 SV=1)

HSP 1 Score: 207.223 bits (526), Expect = 4.020e-64
Identity = 107/159 (67.30%), Postives = 124/159 (77.99%), Query Frame = 1
Query:  121 LIHDFPPPSHAGDRCPLVGSHGAGKTTILKIIGGKHMVEPE-MVKALGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDINLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 594
            +  DF     AG RC LVG++G+GKTT+LKI+ GKHMV  + +V+ L RSAFHDT L  SGDLSYLGG W +    AG ++P+Q D SAE MIFGV GIDP RR +LI +LDINL WRMHKVSDGQRRRVQICMGLL PFKVLLLDE+TVDLDV+AR D
Sbjct:   28 IFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHMVGGKNVVQVLDRSAFHDTELVCSGDLSYLGGSWSKTAGSAG-DIPLQGDFSAEHMIFGVEGIDPFRREKLIDLLDINLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVTVDLDVVARMD 185          

HSP 2 Score: 50.447 bits (119), Expect = 4.020e-64
Identity = 22/48 (45.83%), Postives = 34/48 (70.83%), Query Frame = 3
Query:  651 ATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE-A*QLSLMRTVESW 791
            ATHIFDGLE W SH+ Y+  G+L+L+  +D++K+     +L+  VE+W
Sbjct:  204 ATHIFDGLETWASHLAYINGGELKLSAKLDEIKDLKTSPNLLSVVEAW 251          

HSP 3 Score: 30.4166 bits (67), Expect = 4.020e-64
Identity = 11/20 (55.00%), Postives = 16/20 (80.00%), Query Frame = 2
Query:  590 LTLLRFLRKECEERGAPIIY 649
            + LL F ++ECE+RGA I+Y
Sbjct:  184 MDLLEFFKEECEQRGATIVY 203          
BLAST of DY260282 vs. ExPASy Swiss-Prot
Match: AB19I_ARATH (ABC transporter I family member 19 OS=Arabidopsis thaliana GN=ABCI19 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 2.104e-62
Identity = 108/159 (67.92%), Postives = 124/159 (77.99%), Query Frame = 1
Query:  121 LIHDFPPPSHAGDRCPLVGSHGAGKTTILKIIGGKHMVEPE-MVKALGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDPQRRAELIKVLDINLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 594
            +  DF     AG RC LVG++G+GKTT+LKI+ GKHMV  + +V+ L RSAFHDT L  SGDLSYLGG W + V  AG EVP+Q D SAE MIFGV G DP RR +LI +LDINL WRMHKVSDGQ+RRVQICMGLL PFKVLLLDE+TVDLDV+AR D
Sbjct:   29 IFFDFNLDLPAGSRCLLVGANGSGKTTLLKILAGKHMVGGKNVVQVLSRSAFHDTQLVCSGDLSYLGGSWSKTVGSAG-EVPLQGDFSAEHMIFGVEGTDPVRREKLIDLLDINLQWRMHKVSDGQKRRVQICMGLLHPFKVLLLDEVTVDLDVVARMD 186          

HSP 2 Score: 45.0542 bits (105), Expect = 2.104e-62
Identity = 21/48 (43.75%), Postives = 29/48 (60.42%), Query Frame = 3
Query:  651 ATHIFDGLENWPSHIVYVAHGKLQLAMPMDKVKE-A*QLSLMRTVESW 791
            ATHIFDGLE W +H+ Y+  G+L     M  ++E     +L+  VESW
Sbjct:  205 ATHIFDGLETWATHLAYIQDGELNRLSKMTDIEELKTSPNLLSVVESW 252          

HSP 3 Score: 29.261 bits (64), Expect = 2.104e-62
Identity = 10/20 (50.00%), Postives = 16/20 (80.00%), Query Frame = 2
Query:  590 LTLLRFLRKECEERGAPIIY 649
            + LL F ++EC++RGA I+Y
Sbjct:  185 MDLLEFFKEECDQRGATIVY 204          
BLAST of DY260282 vs. ExPASy Swiss-Prot
Match: YE31_SCHPO (Uncharacterized ABC transporter ATP-binding protein C20G4.01 OS=Schizosaccharomyces pombe GN=SPAC20G4.01 PE=4 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 1.126e-35
Identity = 74/148 (50.00%), Postives = 96/148 (64.86%), Query Frame = 1
Query:  154 GDRCPLVGSHGAGKTTILKIIGGKHMVEPEMVKALGRSAFHDTALTSSGDLSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGID-PQRRAELIKVLDINLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARAD 594
            G R  LVG++GAGK+T+LK++ GK + +   +   G+  F +    SS    YLG EW            I  D+S  ++I  V G    +RR  LI +LDI+L WRMH VSDG+RRRVQ+CMGLL+PF+VLLLDE+TVDLDVLARAD
Sbjct:   30 GSRTLLVGANGAGKSTLLKLLSGKSLAKAGHISVGGKDPFRE----SSSAFVYLGTEWVNNPV-------IHRDMSVARLIASVGGDKFAERRDFLISILDIDLRWRMHAVSDGERRRVQLCMGLLRPFEVLLLDEVTVDLDVLARAD 166          

HSP 2 Score: 38.5058 bits (88), Expect = 1.126e-35
Identity = 15/31 (48.39%), Postives = 23/31 (74.19%), Query Frame = 3
Query:  651 ATHIFDGLENWPSHIVYVAHGKLQLAMPMDK 743
            ATHIFDGL  WP+H+V+++ G++    P+ K
Sbjct:  185 ATHIFDGLAEWPTHLVHLSLGRIVDYGPISK 215          
BLAST of DY260282 vs. ExPASy Swiss-Prot
Match: CAF16_YEAST (CCR4-associated factor 16 OS=Saccharomyces cerevisiae GN=CAF16 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.201e-27
Identity = 63/158 (39.87%), Postives = 94/158 (59.49%), Query Frame = 1
Query:  160 RCPLVGSHGAGKTTILKIIGGKHMVEPEMVKALGRSAFHDTALTSSGD------------LSYLGGEWRREVAFAGFEVPIQMDVSAEKMIFGVAGIDP--QRRAELIKVLDINLSWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEITVDLDVLARA 591
            R  +VG++GAGK+T+LK++ GKH+     +   G   F   ++    D             +YLG EW            I  D+   +++  + G D   +R   L+++LDI++ WRMH++SDGQ+RRVQ+ MGLLKP++VLLLDE+TVDLDV+ARA
Sbjct:   36 RSLVVGANGAGKSTLLKLLSGKHLCLDGKILVNGLDPFSPLSMNQVDDDESVEDSTNYQTTTYLGTEWCHMSI-------INRDIGVLELLKSI-GFDHFRERGERLVRILDIDVRWRMHRLSDGQKRRVQLAMGLLKPWRVLLLDEVTVDLDVIARA 185          

HSP 2 Score: 34.2686 bits (77), Expect = 1.201e-27
Identity = 12/23 (52.17%), Postives = 17/23 (73.91%), Query Frame = 3
Query:  651 ATHIFDGLENWPSHIVYVAHGKL 719
            ATHIFDGL  WP+ + ++  GK+
Sbjct:  205 ATHIFDGLAKWPNQVYHMKSGKI 227          
The following BLAST results are available for this feature:
BLAST of DY260282 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
AB20I_ARATH6.870e-9875.26ABC transporter I family member 20 OS=Arabidopsis ... [more]
AB21I_ARATH4.020e-6467.30ABC transporter I family member 21 OS=Arabidopsis ... [more]
AB19I_ARATH2.104e-6267.92ABC transporter I family member 19 OS=Arabidopsis ... [more]
YE31_SCHPO1.126e-3550.00Uncharacterized ABC transporter ATP-binding protei... [more]
CAF16_YEAST1.201e-2739.87CCR4-associated factor 16 OS=Saccharomyces cerevis... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YA09FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260282 ID=DY260282; Name=DY260282; organism=Citrus clementina; type=EST; length=1161bp
GAAGAAGACCAAGAAAGAAAGATGGCCCTGATGGAGAATTCCAAACCCAC
GGTGGAGATCCACCCCCTGAAGTTCCCGTATCCGGGAATCCACCGCCCTC
CCCCCCCGGGGTCCCCTCCCTTAATCCACGATTTCCCCCCTCCCTCTCAT
GCTGGAGACCGGTGCCCCCTCGTTGGATCCCACGGCGCTGGAAAAACAAC
GATATTAAAGATAATTGGAGGGAAGCACATGGTAGAACCAGAAATGGTGA
AAGCACTGGGAAGGTCTGCTTTCCACGACACCGCTTTGACTTCGTCTGGT
GATCTCTCCTATCTTGGAGGAGAGTGGAGGCGAGAGGTTGCATTTGCTGG
GTTTGAGGTTCCGATTCAAATGGATGTGTCAGCGGAGAAAATGATTTTTG
GAGTTGCAGGAATTGATCCACAGAGAAGAGCTGAACTGATCAAGGTGTTA
GACATTAATCTATCATGGAGGATGCACAAGGTGTCTGATGGTCAGAGAAG
ACGTGTTCAAATTTGCATGGGCCTCCTCAAGCCATTCAAGGTTCTTCTTC
TGGATGAGATAACTGTTGATCTTGATGTGCTAGCAAGAGCTGACCCTCCT
CAGGTTTCTGAGAAAAGAATGTGAAGAGCGCGGTGCCCCAATTATCTACC
GCAACCCACATATTTGATGGTCTGGAGAACTGGCCCTCACATATTGTGTA
TGTAGCTCATGGGAAGTTGCAATTAGCCATGCCGATGGATAAAGTTAAGG
AGGCCTAGCAGTTGTCACTAATGAGAACAGTGGAGAGTTGGCCGAGGAAG
GAAAGAGATGAGGAAAGGGAAAAAAAGAAAAAAAAAAGGGGCGAATGGTC
CTCCCCAATTCCATAAACAATTCCCCGGAACCCTGTAACCCCGGATCCCG
CCCCCGCCCCCGTTCCCGGAAAGAACCTGGTTGGGGCCCCCGGAAGGCCC
CCCCCCCCACCTTCCCCGGGAAAAAAACCTTTTTCCCTACCCCCAACCAA
ATTCCCAAGGTAATTATTTGTTTTACCCCCCCCCCCCCAACCCCGTTCCC
TTTCCCCCCCTTGGGCCCCCAATTAAAAAAATTTTTTTTTTAAAAAAATT
ACCCCCCCGCCCCCCCCTTTCCCCCCCGCCCCCCCCCCCCCCCCCCCCCA
AAAAAAACAAC
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