DY260284

Overview
NameDY260284
Unique NameDY260284
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1151
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14877 contig Ccv1_Contig14877:2..1152. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY260284 vs. ExPASy Swiss-Prot
Match: R13L1_ARATH (Putative disease resistance RPP13-like protein 1 OS=Arabidopsis thaliana GN=RPPL1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.444e-14
Identity = 58/193 (30.05%), Postives = 99/193 (51.30%), Query Frame = 2 
Query:   38 MSFIGEAILTASVDLLVNKLASEGIRLFARQEQIPADL-KKWKNMLVMIKAVLADAEEKK-TDQSVKLWLAELHNLAFDVEDVLDDFQTEAFGRKLLLGNRDPAAARDQPSINRTRTSKFRKLIPTCCTTFTPQSIHFDYAVMSKIKEINDGFQDIVTQKDSLGLNVSSVGRSKTDRKRRETTSLVKEAQVYG 610
            M+ IGE  L A +  L   L SE  R F ++ ++  +L ++    L+ I AVL DAEEK+ T+  V+ W+ EL ++ +  ED LDD  TEA   +L +G        +  S NR R  + R  +          S H +    ++++++    + + +Q++ LGL   +   +   ++R  TTSLV E++V+G
Sbjct:    1 MTGIGEMFLAAFLQALFQTLVSEPFRSFFKRRELNENLLERLSTALLTITAVLIDAEEKQITNPVVEKWVNELRDVVYHAEDALDDIATEAL--RLNIG-------AESSSSNRLRQLRGRMSLG---DFLDGNSEHLE----TRLEKVTIRLERLASQRNILGLKELT---AMIPKQRLPTTSLVDESEVFG 174

HSP 2 Score: 30.0314 bits (66), Expect = 3.444e-14
Identity = 18/75 (24.00%), Postives = 35/75 (46.67%), Query Frame = 3 
Query:  687 IPIIGMGRKGKTPSPPPCHQGKQVQVLFDPQVWTCLPDDFNVIGLKNLPSLSISVDPRWKTPPELTSQGTKKELT 911
            + I+G+G  GKT      +  + V+  F  +VW  + ++F+V  +      S++  P   T  ++     K+ LT
Sbjct:  199 VAIVGIGGVGKTTLSQLLYNDQHVRSYFGTKVWAHVSEEFDVFKITKKVYESVTSRPCEFTDLDVLQVKLKERLT 273
The following BLAST results are available for this feature:
BLAST of DY260284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
R13L1_ARATH3.444e-1430.05Putative disease resistance RPP13-like protein 1 O... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YA11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260284 ID=DY260284; Name=DY260284; organism=Citrus clementina; type=EST; length=1151bp
TCTTTGCAAAACCAAAAAAAAGAAAAAGAAGAAAAAAATGTCATTCATCG
GAGAGGCAATCCTTACGGCGTCCGTTGATTTGCTGGTCAATAAGTTAGCT
TCAGAGGGGATTCGGCTGTTTGCACGCCAAGAGCAAATCCCAGCCGACCT
AAAGAAGTGGAAGAATATGTTGGTGATGATCAAGGCGGTGCTTGCTGATG
CTGAGGAGAAGAAGACTGATCAGTCTGTGAAGTTGTGGCTTGCCGAGCTT
CACAACTTGGCTTTTGATGTTGAAGACGTGCTGGATGACTTTCAAACTGA
GGCTTTCGGGAGGAAGTTGCTGCTTGGAAATCGAGATCCGGCTGCTGCTC
GTGATCAACCCAGTATCAATCGTACAAGAACAAGTAAGTTTCGGAAGCTC
ATTCCTACTTGCTGCACCACTTTTACTCCACAATCAATTCACTTCGATTA
CGCCGTAATGTCCAAAATCAAAGAGATCAACGACGGATTTCAAGATATTG
TAACACAGAAAGACTCGCTCGGTTTGAACGTAAGTTCAGTTGGAAGGTCC
AAAACAGACAGGAAAAGGCGAGAGACTACCTCTTTGGTGAAGGAAGCCCA
AGTATATGGCAGGGAAATCGAAAAGAAGGAGATTGTTGAATTGTTGTTGA
GGGAGGATTTGAGAAATGATGGTGAATTCTCTGTGTATTCCGATTATAGG
TATGGGGCGGAAGGGCAAAACCCCCTCCCCCCCACCTTGCCACCAGGGAA
AGCAGGTGCAGGTCCTTTTTGATCCCCAGGTATGGACTTGCCTCCCTGAC
GATTTCAATGTTATCGGGCTAAAAAATCTCCCCTCCCTTTCAATTTCTGT
GGACCCAAGGTGGAAAACCCCACCTGAATTAACCTCCCAAGGGACTAAAA
AAGAATTAACCCGGAAAAAATTTCTTTCCGGTTTAAAAAAACATTTGGAA
TACAAAAATAAAAAGTCTTTGGATCCCCCCCCAACCCCCCCCTTTAAAGC
GGGCCCCCCCCGGAAGAAAAAAATTCTCGCCCCCCCCCTTAAAACCCGGG
GGGGCCGCCCCCCCCCCGGGGGGGGCCGCCCCCCCCCTTTTTAAAAATAG
GGAGAAGACCGCCCCCAACAGGAGGAAAGCGCCCCCCCCCCTTTGTTTTC
C
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