DY260296

Overview
NameDY260296
Unique NameDY260296
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1118
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260296_ssr87 microsatellite DY260296_ssr87:87..96. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of DY260296 vs. ExPASy Swiss-Prot
Match: PHR2_ARATH (Blue-light photoreceptor PHR2 OS=Arabidopsis thaliana GN=PHR2 PE=2 SV=2)

HSP 1 Score: 353.214 bits (905), Expect = 1.584e-96
Identity = 171/233 (73.39%), Postives = 197/233 (84.55%), Query Frame = 2
Query:   26 LFSHQPNKVKAPTQAXXXXXXXXXXXXXXXXXXXXFKSTLSANPLQSPLSLGPHRPLDPNNGAAIRRASIVWFRNDLRVHGNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGLKIRKT 724
            LF+H PNKVK PTQA                    FKST++ANPLQSPLS+ P RP+DP++ AA+RRA++VWFRNDLRVH NE LN+AN+E VSVLPVYCFDPRDYGKSSSGFDKTGP+RA FLIESVS+LRKNLQARGS+LVVRVGKPE VLVELAK IGADAVYAHREVSHDEVK+E KIE AMK+EG+EVKYFWGSTLYHLDDLPFK+ ++P+NYG F++KV+ L+IRKT
Sbjct:   49 LFAHHPNKVKIPTQASSLTHLSLSSVSPFPSSRISFKSTIAANPLQSPLSIVPRRPVDPSSAAALRRAAVVWFRNDLRVHDNECLNSANDECVSVLPVYCFDPRDYGKSSSGFDKTGPFRAQFLIESVSELRKNLQARGSNLVVRVGKPEAVLVELAKEIGADAVYAHREVSHDEVKAEGKIETAMKEEGVEVKYFWGSTLYHLDDLPFKIEDLPSNYGAFKDKVQKLEIRKT 281          
BLAST of DY260296 vs. ExPASy Swiss-Prot
Match: CRYD_GLOVI (Cryptochrome DASH OS=Gloeobacter violaceus GN=cry PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 7.478e-38
Identity = 74/157 (47.13%), Postives = 111/157 (70.70%), Query Frame = 2
Query:  233 IVWFRNDLRVHGNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 703
            +VW+RNDLRVH +E L +A +++  V+ +YCFDPR +GK+  GF+KTGP+RA FL+ESV+DLR++L+  GSDL+VR G PE V+  L   +   AV+ H EV+ +E+  E  ++AA+    + V+ FWG+TL H DDLPF +  +P  +  FR++V+
Sbjct:    7 LVWYRNDLRVHDHEPLTSALHKNARVVALYCFDPRQFGKAPFGFEKTGPFRARFLLESVADLRRSLRQLGSDLLVRRGHPEEVIPALVSELEIAAVHYHGEVTSEELVVERDLQAALAPLNVPVRSFWGTTLVHPDDLPFAIEAIPELFTDFRKQVE 163          
BLAST of DY260296 vs. ExPASy Swiss-Prot
Match: CRYD_SYNY3 (Cryptochrome DASH OS=Synechocystis sp. (strain PCC 6803) GN=cry PE=1 SV=2)

HSP 1 Score: 149.058 bits (375), Expect = 4.537e-35
Identity = 69/161 (42.86%), Postives = 107/161 (66.46%), Query Frame = 2
Query:  233 IVWFRNDLRVHGNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVKGLKI 715
            +VWFRNDLR+H +E L+ A    +++  VYC+DPR + ++  GF KTGP+R++FL +SV +L ++LQ  G+ L+V  G PE V+ ++AK I A  +Y HREV+ +E+  E  +   +   GIE K +WGSTL H +DLPF + ++P  +  FR+ ++  KI
Sbjct:    9 LVWFRNDLRLHDHEPLHRALKSGLAITAVYCYDPRQFAQTHQGFAKTGPWRSNFLQQSVQNLAESLQKVGNKLLVTTGLPEQVIPQIAKQINAKTIYYHREVTQEELDVERNLVKQLTILGIEAKGYWGSTLCHPEDLPFSIQDLPDLFTKFRKDIEKKKI 169          
BLAST of DY260296 vs. ExPASy Swiss-Prot
Match: CRYD_ARATH (Cryptochrome DASH, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=CRYD PE=1 SV=2)

HSP 1 Score: 142.51 bits (358), Expect = 4.246e-33
Identity = 74/161 (45.96%), Postives = 103/161 (63.98%), Query Frame = 2
Query:  230 SIVWFRNDLRVHGNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEG--IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 703
            +I+WFRNDLRV  N++L  A + S ++LPVYC DPR +  +    F KTG  R  FL+E + DLRKNL  RG +L++R GKPE +L  LAK  GA  V+AH+E   +EV  E  +   +K  G   +++  WGST+YH DDLPF + ++P  Y  FR+ V+
Sbjct:   86 TILWFRNDLRVLDNDALYKAWSSSDTILPVYCLDPRLFHTTHFFNFPKTGALRGGFLMECLVDLRKNLMKRGLNLLIRSGKPEEILPSLAKDFGARTVFAHKETCSEEVDVERLVNQGLKRVGNSTKLELIWGSTMYHKDDLPFDVFDLPDVYTQFRKSVE 246          
BLAST of DY260296 vs. ExPASy Swiss-Prot
Match: CRYD_DANRE (Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 9.460e-33
Identity = 76/163 (46.63%), Postives = 101/163 (61.96%), Query Frame = 2
Query:  224 RASIVWFRNDLRVHGNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYA-HREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVK 703
            R  I   RNDLR+H NE  + A   +  ++P+YCFDPR Y G     F KTGP+R  FL++SV DLR  L+  GS L+VR GKPE V+ EL K +G+ +  A H EV+ +E   EEK++       + V+ FWGSTLYH DDLPF  +G +P  Y  FR+ V+
Sbjct:    5 RTVICLLRNDLRLHDNEVFHWAQRNAEHIIPLYCFDPRHYQGTYHYNFPKTGPFRLRFLLDSVKDLRALLKKHGSTLLVRQGKPEDVVCELIKQLGSVSTVAFHEEVASEEKSVEEKLKEICCQNKVRVQTFWGSTLYHRDDLPFSHIGGLPDVYTQFRKAVE 167          
BLAST of DY260296 vs. ExPASy Swiss-Prot
Match: CRYD_XENLA (Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.107e-32
Identity = 77/171 (45.03%), Postives = 107/171 (62.57%), Query Frame = 2
Query:  224 RASIVWFRNDLRVHGNESLNTANNESVSVLPVYCFDPRDY-GKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIG-ADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFK-LGEMPTNYGGFREKVKGL-KIRKT 724
            R  I   RNDLR+H NE L+ A+  +  ++P+YCFDPR Y G     F KTGP+R  FL+ESV DLR  L+ +GS+L++R GKPE V+ +L K +G   AV  H E + +E   E  ++ A    GI+ + FWGSTLYH +DLPF+ +  +P  Y  FR+ V+   K+R T
Sbjct:    6 RVIICLLRNDLRLHDNEVLHWAHRNADQIVPLYCFDPRHYVGTHYFNFPKTGPHRLKFLLESVRDLRITLKKKGSNLLLRRGKPEEVIEDLVKQLGNVSAVTLHEEATKEETDVESAVKQACTRLGIKYQTFWGSTLYHREDLPFRHISSLPDVYTQFRKAVETQGKVRPT 176          
BLAST of DY260296 vs. ExPASy Swiss-Prot
Match: CRYD_ORYSJ (Cryptochrome DASH, chloroplastic/mitochondrial OS=Oryza sativa subsp. japonica GN=CRYD PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 2.107e-32
Identity = 76/174 (43.68%), Postives = 104/174 (59.77%), Query Frame = 2
Query:  230 SIVWFRNDLRVHGNESLNTANNESVSVLPVYCFDPRDYGKSSS--GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAM--------------KDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 703
            +IVWFRNDLRV  NE++  A   S +VLPVYC DPR    S+   GF KTG  RA FLIE + DL++NL  +G DL++R GKPE +L  +AKA+ A  VYAH+E   +E+  E  +   +              K    +++  WG+TLYH+DDLPF +  +P  Y  FR+ V+
Sbjct:   86 AIVWFRNDLRVLDNEAVVRAWAASDAVLPVYCVDPRISAGSTHYFGFPKTGALRAQFLIECLEDLKRNLTKQGLDLLIRHGKPEDILPSIAKAVTAHTVYAHKETCSEELLVEHLVRKGLEQVVIPQGGASNQKKPRNPKLQLIWGATLYHVDDLPFSVNNLPDVYTQFRKAVE 259          
BLAST of DY260296 vs. ExPASy Swiss-Prot
Match: CRYD_SOLLC (Cryptochrome DASH, chloroplastic/mitochondrial OS=Solanum lycopersicum GN=CRYD PE=3 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 2.752e-32
Identity = 77/175 (44.00%), Postives = 107/175 (61.14%), Query Frame = 2
Query:  230 SIVWFRNDLRVHGNESLNTANNESVSVLPVYCFDPRDYGKSSS-GFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMK------------DEG----IEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 703
            +IVWFRNDLRV  NE+L  A   S ++LPVYC DPR +G +   G  KTG  RA F+IE ++DL++NL  RG DL+++ GKPE ++  LAKA  A  VYAH+E   +EVK E+ +   ++            D G     +++  WGST+YH+DDLPF    +P  Y  FR+ V+
Sbjct:   80 AIVWFRNDLRVLDNEALLRAWVSSEAILPVYCVDPRLFGTTHYFGMPKTGALRAQFIIECLNDLKRNLVKRGLDLLIQHGKPEDIVPSLAKAYKAHTVYAHKETCSEEVKVEKMVTRNLQKLVSPSSGGIGNDPGSGNTTKLELVWGSTMYHIDDLPFDCESLPDVYTQFRKSVE 254          
BLAST of DY260296 vs. ExPASy Swiss-Prot
Match: CRYD_RHOBA (Cryptochrome DASH OS=Rhodopirellula baltica GN=cry PE=3 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 3.720e-29
Identity = 62/158 (39.24%), Postives = 96/158 (60.76%), Query Frame = 2
Query:  230 SIVWFRNDLRVHGNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 703
            ++VWFRNDLR   +E    A+        V+C DPR +  +  GF +TGP+RA FLIE+++DLR  L++ G +L+VRVG+PETVL  L  ++  DAV+ H E   +E  + E ++      GI     +G TL H D+LPF++ + P  +  FR++++
Sbjct:    4 ALVWFRNDLRTIDHEPFLRASTAD-RCFAVHCIDPRQFETTELGFQRTGPFRARFLIENLTDLRSRLRSLGGELIVRVGRPETVLQHLLPSLAIDAVHFHHEPRTEEADTAESVQQLCDQHGIATHVAYGDTLIHPDELPFEIADTPELFTDFRKEIE 160          
BLAST of DY260296 vs. ExPASy Swiss-Prot
Match: CRYD_NATPD (Cryptochrome DASH OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=cry PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.082e-28
Identity = 67/158 (42.41%), Postives = 101/158 (63.92%), Query Frame = 2
Query:  230 SIVWFRNDLRVHGNESLNTANNESVSVLPVYCFDPRDYGKSSSGFDKTGPYRASFLIESVSDLRKNLQARGSDLVVRVGKPETVLVELAKAIGADAVYAHREVSHDEVKSEEKIEAAMKDEGIEVKYFWGSTLYHLDDLPFKLGEMPTNYGGFREKVK 703
            ++VWFR+DLRV  N +L  A   + +V+PVY FDP  Y +S  G  KTG +RA F  ++V+DLR +L+ RG DL+VR G+P TV+ ELA+  GADAVYA  + + +E +    + +A+ D GI ++  W  TLYH DDLP    ++   +  +R++ +
Sbjct:    4 AVVWFRDDLRVTDNPTLADAVAAAETVIPVYTFDPDRYTESEYGPPKTGGHRAVFRRQAVADLRASLRDRGGDLLVRSGRPATVVPELAQRAGADAVYAQTKPATEERRRAADVASALDDAGIALRQRWTHTLYHPDDLPTPPTDIDDTFTPWRKETE 161          
The following BLAST results are available for this feature:
BLAST of DY260296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
PHR2_ARATH1.584e-9673.39Blue-light photoreceptor PHR2 OS=Arabidopsis thali... [more]
CRYD_GLOVI7.478e-3847.13Cryptochrome DASH OS=Gloeobacter violaceus GN=cry ... [more]
CRYD_SYNY34.537e-3542.86Cryptochrome DASH OS=Synechocystis sp. (strain PCC... [more]
CRYD_ARATH4.246e-3345.96Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_DANRE9.460e-3346.63Cryptochrome DASH OS=Danio rerio GN=cry-dash PE=2 ... [more]
CRYD_XENLA2.107e-3245.03Cryptochrome DASH OS=Xenopus laevis GN=cry-dash PE... [more]
CRYD_ORYSJ2.107e-3243.68Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_SOLLC2.752e-3244.00Cryptochrome DASH, chloroplastic/mitochondrial OS=... [more]
CRYD_RHOBA3.720e-2939.24Cryptochrome DASH OS=Rhodopirellula baltica GN=cry... [more]
CRYD_NATPD1.082e-2842.41Cryptochrome DASH OS=Natronomonas pharaonis (strai... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB04FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260296 ID=DY260296; Name=DY260296; organism=Citrus clementina; type=EST; length=1118bp
CTTCATTCAACCCAAAATTTCCACCTTATTTTCCCACCAACCAAACAAGG
TCAAAGCCCCCACACAAGCCTCTACGCTTACCCACATCTCTCTCTCCGCC
TCCTCCACTCTCTCTCCTTCCAAAATTTCATTCAAGTCCACACTCTCCGC
AAACCCTCTTCAGAGCCCTCTCTCTTTAGGGCCCCACCGCCCCTTGGACC
CGAACAATGGGGCCGCAATTCGTCGAGCTTCCATTGTTTGGTTCCGCAAC
GACTTGCGGGTCCATGGCAACGAATCTCTCAACACCGCCAATAACGAGAG
CGTCTCTGTTTTGCCTGTTTATTGTTTCGACCCGAGGGATTACGGCAAAT
CCTCTTCTGGCTTTGACAAAACGGGGCCGTATCGGGCATCGTTTTTGATT
GAGTCAGTTTCTGACCTTCGCAAGAACTTGCAGGCACGTGGGTCTGATCT
CGTGGTGAGAGTGGGAAAGCCGGAGACTGTTCTGGTCGAGTTGGCTAAAG
CCATTGGAGCTGATGCAGTGTACGCGCACAGAGAGGTGTCACATGATGAG
GTTAAATCGGAGGAGAAGATTGAGGCAGCGATGAAAGACGAGGGAATTGA
AGTGAAGTACTTTTGGGGAAGCACTTTGTACCATCTTGATGATTTGCCGT
TTAAGTTGGGGGAAATGCCCACTAATTATGGTGGGTTTAGAGAAAAGGTT
AAGGGCCTGAAGATTCGGAAAACCAATTGAGGCTTGGAACCTTTGAAGGA
ATTGCCTCTCCAGGAAAAGTTAACCCGGGTGAAATTCCCCTCCTGGTGGG
ACCTAGTCCCCACCCAAATGCCGCAAGGCCCCGGGGGGGAAACCCACCCC
CCCTTCCTTCGAAGGAGGGGAAACACGAACCCCCCGCCAAGGCCCAAAAA
ATTTCCCCCTAAAACCCCCCCCCCCCCCCCAAGGAAAACAAGGGGGGGCC
CCCCCAAACCTTTTAGGGGAGCAACCTCCCCCTCCAAAAACCCCCCCTCC
GCCCGGCCCGGGGAAGCCCCCCCCCCCCCCCCCCCCCTTTGAAAAAAACA
CAAAAAAAAACCCCCCCCACCAATCTCTCCCCCCCCCCCCCCAAAAGACC
AAAGAGCGGGGTAAAAAA
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