DY260298

Overview
NameDY260298
Unique NameDY260298
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1242
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1474 contig Ccv1_Contig1474:1..1242. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI2_ARATH (Isopentenyl-diphosphate Delta-isomerase II OS=Arabidopsis thaliana GN=IPP2 PE=2 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 1.117e-77
Identity = 137/153 (89.54%), Postives = 145/153 (94.77%), Query Frame = 1
Query:    1 LVWTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 459
            LVWT TCCSHPLYRESELI++NALGVRNAAQRKLLDELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHELDYLLFIVRDV V PNPDEVAE KYV+RE+LKEL++KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL E IDMKTIHKL
Sbjct:  132 LVWTNTCCSHPLYRESELIQDNALGVRNAAQRKLLDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHELDYLLFIVRDVKVQPNPDEVAEIKYVSREELKELVKKADAGEEGLKLSPWFRLVVDNFLMKWWDHVEKGTLVEAIDMKTIHKL 284          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI1_CAMAC (Isopentenyl-diphosphate Delta-isomerase I OS=Camptotheca acuminata GN=IPI1 PE=2 SV=1)

HSP 1 Score: 290.041 bits (741), Expect = 1.905e-77
Identity = 136/153 (88.89%), Postives = 145/153 (94.77%), Query Frame = 1
Query:    1 LVWTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 459
            LVWT TCCSHPLYRESELI+ENALG RNAAQRKLLDELGI AEDVPVD+F PLGRILYKAPSDGKWGEHELDYLLFIVRDV+VNPNPDEVA+ KYV R+QLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDH+EKGT++E  DMK+IHKL
Sbjct:   82 LVWTNTCCSHPLYRESELIKENALGARNAAQRKLLDELGIPAEDVPVDQFIPLGRILYKAPSDGKWGEHELDYLLFIVRDVNVNPNPDEVADIKYVTRDQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHVEKGTMHEAADMKSIHKL 234          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI2_CLABR (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia breweri GN=IPI2 PE=3 SV=2)

HSP 1 Score: 289.656 bits (740), Expect = 2.489e-77
Identity = 137/153 (89.54%), Postives = 146/153 (95.42%), Query Frame = 1
Query:    1 LVWTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 459
            LVWT TCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTPL R+LYKAPSDGKWGEHELDYLLFIVRDV+V+PNPDEVAE KYVNREQLKELL+KADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E +DMK+IHKL
Sbjct:  134 LVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPLSRMLYKAPSDGKWGEHELDYLLFIVRDVAVHPNPDEVAEIKYVNREQLKELLKKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKSIHKL 286          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI2_CLAXA (Isopentenyl-diphosphate Delta-isomerase II OS=Clarkia xantiana GN=IPI2 PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 1.235e-76
Identity = 135/153 (88.24%), Postives = 144/153 (94.12%), Query Frame = 1
Query:    1 LVWTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 459
            LVWT TCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AEDVPVDEFTP+ R+LYKAPSDGKWGEHELDYLLFIVRDV ++PNPDEVA+ KYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFL KWWDH+EKGTL+E +DMKTIH L
Sbjct:  138 LVWTNTCCSHPLYRESELIDENNLGVRNAAQRKLLDELGIPAEDVPVDEFTPVSRMLYKAPSDGKWGEHELDYLLFIVRDVGIHPNPDEVADIKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLPKWWDHVEKGTLSEAVDMKTIHNL 290          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI2_CAMAC (Isopentenyl-diphosphate Delta-isomerase II OS=Camptotheca acuminata GN=IPI2 PE=2 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 6.130e-76
Identity = 131/154 (85.06%), Postives = 145/154 (94.16%), Query Frame = 1
Query:    1 LVWTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKLT 462
            LVWT TCCSHP YRESEL++ENALGVRNAAQRKLLDELGI AEDVPVD+F PLGR+LYKAPSDGKWGEHELDYLLFI+RDV+V+PNPDEVA+ KYVN++QLK+LLRK DAGEEGLKLSPWFRLVV+NFLFKWWDH+EKGTL +  DMKTIHKLT
Sbjct:  156 LVWTNTCCSHPRYRESELVDENALGVRNAAQRKLLDELGIPAEDVPVDQFIPLGRMLYKAPSDGKWGEHELDYLLFIIRDVNVHPNPDEVADVKYVNQDQLKDLLRKVDAGEEGLKLSPWFRLVVENFLFKWWDHVEKGTLQDATDMKTIHKLT 309          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI1_ARATH (Isopentenyl-diphosphate Delta-isomerase I OS=Arabidopsis thaliana GN=IPP1 PE=2 SV=2)

HSP 1 Score: 281.567 bits (719), Expect = 6.777e-75
Identity = 130/153 (84.97%), Postives = 141/153 (92.16%), Query Frame = 1
Query:    1 LVWTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 459
            LVWT TCCSHPLYRESELIEEN LGVRNAAQRKL DELGI AEDVPVDEFTPLGR+LYKAPSDGKWGEHE+DYLLFIVRDV + PNPDEVAE KYV+RE+LKEL++KADAG+E +KLSPWFRLVVDNFL KWWDH+EKGT+ E  DMKTIHKL
Sbjct:   81 LVWTNTCCSHPLYRESELIEENVLGVRNAAQRKLFDELGIVAEDVPVDEFTPLGRMLYKAPSDGKWGEHEVDYLLFIVRDVKLQPNPDEVAEIKYVSREELKELVKKADAGDEAVKLSPWFRLVVDNFLMKWWDHVEKGTITEAADMKTIHKL 233          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI1_CLABR (Isopentenyl-diphosphate Delta-isomerase I OS=Clarkia breweri GN=IPI1 PE=2 SV=2)

HSP 1 Score: 278.87 bits (712), Expect = 4.393e-74
Identity = 129/153 (84.31%), Postives = 142/153 (92.81%), Query Frame = 1
Query:    1 LVWTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 459
            LVWT TCCSHPLYRESELI+EN LGVRNAAQRKLLDELGI AED+PVD+F PL RILYKAPSDGKWGEHELDYLLFI+RDV+++PNPDEVAE KY+NR+ LKELLRKADA EEG+KLSPWFRLVVDNFLFKWWDH+EKG+L +  DMKTIHKL
Sbjct:  135 LVWTNTCCSHPLYRESELIDENCLGVRNAAQRKLLDELGIPAEDLPVDQFIPLSRILYKAPSDGKWGEHELDYLLFIIRDVNLDPNPDEVAEVKYMNRDDLKELLRKADAEEEGVKLSPWFRLVVDNFLFKWWDHVEKGSLKDAADMKTIHKL 287          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI1_MACFA (Isopentenyl-diphosphate Delta-isomerase 1 OS=Macaca fascicularis GN=IDI1 PE=2 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.990e-42
Identity = 81/151 (53.64%), Postives = 114/151 (75.50%), Query Frame = 1
Query:    7 WTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 459
            +T TCCSHPL    EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+LF+ ++V++NP+P+E+  + YV++E+LKELL+KA  GE  +K++PWF+++ + FLFKWWD+L    LN+ +D + IH++
Sbjct:   81 FTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILFVRKNVTLNPDPNEIKSFCYVSKEELKELLKKAANGE--IKITPWFQIIAETFLFKWWDNLNH--LNQFVDHEKIHRM 227          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI1_PONAB (Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo abelii GN=IDI1 PE=2 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 5.791e-42
Identity = 80/151 (52.98%), Postives = 114/151 (75.50%), Query Frame = 1
Query:    7 WTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 459
            +T TCCSHPL    EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF+++ + FLFKWWD+L    LN+ +D + I+++
Sbjct:   81 FTNTCCSHPLSNPGELEENDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAETFLFKWWDNLNH--LNQFVDHEKIYRI 227          
BLAST of DY260298 vs. ExPASy Swiss-Prot
Match: IDI1_HUMAN (Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo sapiens GN=IDI1 PE=1 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 1.290e-41
Identity = 80/151 (52.98%), Postives = 114/151 (75.50%), Query Frame = 1
Query:    7 WTTTCCSHPLYRESELIEENALGVRNAAQRKLLDELGICAEDVPVDEFTPLGRILYKAPSDGKWGEHELDYLLFIVRDVSVNPNPDEVAEYKYVNREQLKELLRKADAGEEGLKLSPWFRLVVDNFLFKWWDHLEKGTLNEVIDMKTIHKL 459
            +T TCCSHPL   +EL E +ALGVR AAQR+L  ELGI  E+VP +E   L RI YKA SDG WGEHE+DY+L + ++V++NP+P+E+  Y YV++E+LKELL+KA +GE  +K++PWF+++   FLFKWWD+L    LN+ +D + I+++
Sbjct:   81 FTNTCCSHPLSNPAELEESDALGVRRAAQRRLKAELGIPLEEVPPEEINYLTRIHYKAQSDGIWGEHEIDYILLVRKNVTLNPDPNEIKSYCYVSKEELKELLKKAASGE--IKITPWFKIIAATFLFKWWDNLNH--LNQFVDHEKIYRM 227          
The following BLAST results are available for this feature:
BLAST of DY260298 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
IDI2_ARATH1.117e-7789.54Isopentenyl-diphosphate Delta-isomerase II OS=Arab... [more]
IDI1_CAMAC1.905e-7788.89Isopentenyl-diphosphate Delta-isomerase I OS=Campt... [more]
IDI2_CLABR2.489e-7789.54Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CLAXA1.235e-7688.24Isopentenyl-diphosphate Delta-isomerase II OS=Clar... [more]
IDI2_CAMAC6.130e-7685.06Isopentenyl-diphosphate Delta-isomerase II OS=Camp... [more]
IDI1_ARATH6.777e-7584.97Isopentenyl-diphosphate Delta-isomerase I OS=Arabi... [more]
IDI1_CLABR4.393e-7484.31Isopentenyl-diphosphate Delta-isomerase I OS=Clark... [more]
IDI1_MACFA1.990e-4253.64Isopentenyl-diphosphate Delta-isomerase 1 OS=Macac... [more]
IDI1_PONAB5.791e-4252.98Isopentenyl-diphosphate Delta-isomerase 1 OS=Pongo... [more]
IDI1_HUMAN1.290e-4152.98Isopentenyl-diphosphate Delta-isomerase 1 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB06FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260298 ID=DY260298; Name=DY260298; organism=Citrus clementina; type=EST; length=1242bp
CTTGTGTGGACTACCACCTGCTGCAGCCATCCTCTGTACCGTGAATCTGA
GCTTATTGAGGAGAACGCTCTTGGGGTGAGGAATGCTGCCCAAAGAAAGC
TTTTGGATGAGCTGGGCATTTGTGCTGAAGATGTGCCAGTTGATGAGTTC
ACTCCACTGGGTCGCATTCTGTACAAGGCCCCTTCTGATGGCAAGTGGGG
GGAGCATGAACTTGACTACTTACTTTTCATTGTCCGAGATGTTAGTGTTA
ACCCAAATCCTGATGAAGTAGCCGAGTATAAATATGTCAACCGGGAACAG
TTAAAAGAGCTTTTGAGGAAAGCAGATGCTGGAGAAGAAGGTTTGAAGCT
GTCTCCTTGGTTCAGACTGGTTGTGGACAATTTCTTGTTCAAGTGGTGGG
ATCACCTCGAAAAAGGTACCCTTAACGAAGTCATTGACATGAAGACCATT
CACAAGTTGACTTAATAAAGCCGCAGGCCCTTGAAACACAGTATTTGTGT
GCCGGAACCTGTATTCCAATAAGTTTGGGCATTTGAGAGTTCTTCCAGAC
ATTAAGGGTACCCCGTATCTTCTCACCGGTTTCTTTATTCCAATAAATTT
GGATATGCAAGAGTTCTACCCCGATTAGCATTTTGTTGGTGACGTTACCC
TATCTTTTTTCCGATGTGCTGCCTTTATGGAATTTCATTGATAAGTTTGC
CATTTTGACCCTTCCCAATGGTTTAATCCAACACAAAACAATCCTGCTTC
CTCCTTTCACCAAAAACAAACCACCCAACACCCCCCACCTTCCTTCACCC
AACTGCTCCCCCAAAAAACCCTCCCTCCCCATCTCTTCCACACCACCCGC
CCCCTCTCCGCCCTTCTAAAACACCCCTTTTCTCCCCCTCCCCCCATCCC
TCCCCAGTGGGCCTGCCCTCTTCCCCCCTCCCCCTTTTCCCAGCCCCTAT
TCCCGCGCACCCCTCTCCGGCACTCATAACTGTGTTTTATCTCTCACAAA
CCACTCTCACCCCCTCCTCTCCTCACCAACATCCGCCCCCACCCCTCACC
CGACCACCCTCCCCGCCCCTTCTCACCAACGCCCCACCCGCCTCACCCCC
ATACTAGCCCCACCCCATCCCCCTCTCCCCCCGCCCTTCTACCGCCCCCG
CCGCCCAACCGGAACCCCAACGCCCCTGCAGCACCCCTCATACCGCCTCC
CACCCGCCCACCTCACCCACTACCACCGCCCCATCCTTCCCC
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