DY260303

Overview
NameDY260303
Unique NameDY260303
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1207
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DY260303_ssr1053 microsatellite DY260303_ssr1053:1053..1062. BLAST: Citrus ESTs to Prunus persica proteins V1
DY260303_ssr916 microsatellite DY260303_ssr916:916..930. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig10335 contig Ccv1_Contig10335:1076..2282. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DY260303 vs. ExPASy Swiss-Prot
Match: NEP1_NEPGR (Aspartic proteinase nepenthesin-1 OS=Nepenthes gracilis GN=nep1 PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.909e-22
Identity = 63/165 (38.18%), Postives = 91/165 (55.15%), Query Frame = 3 
Query:    3 NKKVVTFYYVGLTGFSVGGQAVQIPPSLFEMDEA-GDGGIIVDCGTAITRLQTQAYNSLRDSFVRLAGNLKPTSGVAL-FDTCYDF-SGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPTSSALSIIGNVQQQGTRVSFDLANNRVGFTPNKC 488
            + ++ TFYY+ L G SVG   + I PS F ++   G GGII+D GT +T     AY S+R  F+    NL   +G +  FD C+   S   ++++PT  +HF  G  L+LP++NY I   S G  C A   +S  +SI GN+QQQ   V +D  N+ V F   +C
Sbjct:  273 SSQIPTFYYITLNGLSVGSTRLPIDPSAFALNSNNGTGGIIIDSGTTLTYFVNNAYQSVRQEFISQI-NLPVVNGSSSGFDLCFQTPSDPSNLQIPTFVMHFDGGD-LELPSENYFIS-PSNGLICLAMGSSSQGMSIFGNIQQQNMLVVYDTGNSVVSFASAQC 434
[Close]
BLAST of DY260303 vs. ExPASy Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 9.259e-21
Identity = 62/162 (38.27%), Postives = 94/162 (58.02%), Query Frame = 3 
Query:   18 TFYYVGLTGFSVGGQAVQIPPSLFEMDEAGDGGIIVDCGTAITRLQTQAYNSLRDSF---VRLAGNLKPTSGVALFDTCYDF-SGLRSVRVPTVSLHFGAGKALDLPAKNYLIPVDSAGTFCFAFAPTSS-ALSIIGNVQQQGTRVSFDLANNRVGFTPNKC 488
            T+YY+ L G +VGG  + IP S F++ + G GG+I+D GT +T L   AYN++  +F   + L    + +SG++   TC+   S   +V+VP +S+ F  G  L+L  +N LI   + G  C A   +S   +SI GN+QQQ T+V +DL N  V F P +C
Sbjct:  279 TYYYITLQGITVGGDNLGIPSSTFQLQDDGTGGMIIDSGTTLTYLPQDAYNAVAQAFTDQINLPTVDESSSGLS---TCFQQPSDGSTVQVPEISMQFDGG-VLNLGEQNILIS-PAEGVICLAMGSSSQLGISIFGNIQQQETQVLYDLQNLAVSFVPTQC 435
The following BLAST results are available for this feature:
BLAST of DY260303 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NEP1_NEPGR4.909e-2238.18Aspartic proteinase nepenthesin-1 OS=Nepenthes gra... [more]
NEP2_NEPGR9.259e-2138.27Aspartic proteinase nepenthesin-2 OS=Nepenthes gra... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YB11FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260303 ID=DY260303; Name=DY260303; organism=Citrus clementina; type=EST; length=1207bp
GGAACAAAAAAGTTGTTACGTTCTATTACGTGGGGCTCACTGGATTCAGC
GTCGGTGGTCAGGCAGTCCAAATCCCACCATCGCTTTTTGAAATGGACGA
AGCAGGCGACGGCGGGATTATTGTTGATTGTGGAACCGCCATAACTCGCC
TGCAGACTCAGGCCTACAACTCCCTCCGCGACTCTTTCGTCAGGCTGGCG
GGTAACTTGAAACCCACCAGCGGGGTCGCTTTATTCGACACGTGCTACGA
TTTCTCCGGATTAAGGAGTGTTAGGGTCCCAACGGTGTCGCTTCACTTCG
GTGCTGGAAAAGCTCTTGATTTACCCGCCAAAAATTACTTGATTCCAGTA
GACTCAGCTGGGACTTTCTGTTTCGCATTCGCTCCAACGTCGTCGGCTCT
GTCAATTATTGGCAACGTGCAGCAACAGGGAACACGTGTCAGTTTTGATT
TGGCGAACAATCGCGTCGGGTTCACTCCCAATAAGTGTTAGGCATTTTCG
GAACCCATAATTACCTTGTTACCCCTGGTAATTGGTAGAAAAAGGGAACT
GTTAGCTGTCCATTTGTTAGGAGAAACTTTTATACCCCGTTTAATTGTTA
GGAGAATGAACTGAAAGATGTTGCGTTTAAGGACCCGTGTTGACTGGCGG
TGGATGAAAATTGGCATCCCCCCTCCATAAATTTGCATCAGCTTTTGGCC
GGAGTGGTTCCTGCCATTACTCAATCCTACATTAAAATACCGGGTCCCCG
CCCGGATTAATGCCCGGTCTCCCTAACCCACACCCCACCCTCACGCGCAC
CCTGTCCCCAACCCGCTCCCCTTATTACTCCCCCTATATACCTCGTGTGG
GCCGGGCCTCTCCTCCCCCGCCTCTACTTCGGCTGCGCAACCCCTCCCCC
GCACTCCTCCCAAATCACCCCACCCCACCCCCTCATAACTTCTCCCCAAG
ACCCCTCACTTATACACAACTCCCTGCATCTTCCCCCCCTTACCCCTCCC
CACACTCTTCCCCTCTCTCTCCACACCCACCTCCCACTCACACCCCCCCC
CCCTCTCTCTCTCCCCCTACCCGCCTCTTTCTTCGCCATCCCCCCTCCCC
ATACCCTCCCTCTACCCCAATCTTCATCCCTGCCACCCACTGTACTTCTT
CCACCACTGGNAACCTCTACTCACACACACCCACCTAAAGCTCTCCCCTT
AATATCC
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