DY260306

Overview
NameDY260306
Unique NameDY260306
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1268
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1476 contig Ccv1_Contig1476:1..1268. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB24_ARATH (Chlorophyll a-b binding protein 4, chloroplastic OS=Arabidopsis thaliana GN=CAB4 PE=1 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 1.003e-81
Identity = 154/215 (71.63%), Postives = 166/215 (77.21%), Query Frame = 3
Query:   21 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSA---SFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPRKCQPRPPFSSSTACPPNEVGVPRWHLQPPKLAPPDEAKENEPCQSEIGNL 656
            MATVTT ASA++FRPC SK RFLTGSSG+LNR+++   + SSA   SFKVEAKKGEWLPGLASP YL GSL GDNGFDPLGLAEDPENLKW+VQAELVN RWAMLGV GMLLPEVFTKIGIINVP+WYDAGK +YFASSSTLFVIEFILFHYVEIRRWQDIKNP      P F    + P  EVG P     P   AP  EAKE E     +  L
Sbjct:    1 MATVTTHASASIFRPCTSKPRFLTGSSGRLNRDLSFTSIGSSAKTSSFKVEAKKGEWLPGLASPDYLTGSLAGDNGFDPLGLAEDPENLKWFVQAELVNGRWAMLGVAGMLLPEVFTKIGIINVPEWYDAGKEQYFASSSTLFVIEFILFHYVEIRRWQDIKNPGSVNQDPIF-KQYSLPKGEVGYPGGIFNPLNFAPTQEAKEKELANGRLAML 214          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB24_PEA (Chlorophyll a-b binding protein P4, chloroplastic OS=Pisum sativum GN=lhcA-P4 PE=1 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 1.109e-80
Identity = 157/214 (73.36%), Postives = 164/214 (76.64%), Query Frame = 3
Query:   21 MATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPV--SSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPRKCQPRPPFSSSTACPPNEVGVPRWHLQPPKLAPPDEAKENEPCQSEIGNL 656
            MATVTTQASAA+F PC  KSRFL GSSGKLNR VA +PV  S SASFKVEAKKGEWLPGLASP YL GSLPGDNGFDPLGLAEDPENL+W+VQAELVN RWAMLGV GMLLPEVFT IGIINVP+WY AGK EYFASSSTLFVIEFIL HYVEIRRWQDIKNP      P F    + P  EVG P     P   AP  EAKE E     +  L
Sbjct:    1 MATVTTQASAAIFGPCGLKSRFLGGSSGKLNRGVAFRPVGCSPSASFKVEAKKGEWLPGLASPGYLTGSLPGDNGFDPLGLAEDPENLRWFVQAELVNGRWAMLGVAGMLLPEVFTSIGIINVPKWYAAGKEEYFASSSTLFVIEFILSHYVEIRRWQDIKNPGSVNQDPIF-KQYSLPAGEVGYPGGIFNPLNFAPTLEAKEKEIANGRLAML 213          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB120_HORVU (Chlorophyll a-b binding protein 1B-20, chloroplastic (Fragment) OS=Hordeum vulgare GN=LHC Ib-20 PE=1 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 9.177e-43
Identity = 100/201 (49.75%), Postives = 119/201 (59.20%), Query Frame = 3
Query:   57 FRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDA-GKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPRKCQPRPPFSSSTACPPNEVGVPRWHLQPPKLAPPDEAKENEPCQSEIGNL 656
            FR     S   +GS     R+VA++             KG WLPGL SP YL+GSL GDNGFDPL LAEDPE+L+W+VQA++VN RWAMLGV GML+PEV TK G++N P+W    GK  YFASSST   +  +   YVEIRRWQDIKNP      P F  S + PP+E G P     P   AP  E KE E     +  L
Sbjct:    7 FRTRVPPSPAASGSPRSTRRDVAVQA------------KGSWLPGLQSPAYLDGSLEGDNGFDPLALAEDPEDLRWFVQADVVNGRWAMLGVAGMLIPEVLTKAGLMNAPEWLRLPGKETYFASSSTALRVH-MSSTYVEIRRWQDIKNPGSVNQDPIF-KSYSLPPHECGYPGRVFNPLNFAPL-ENKEKELANGRLAML 192          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB12_PETHY (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 1.980e-37
Identity = 80/172 (46.51%), Postives = 106/172 (61.63%), Query Frame = 3
Query:   69 ASKSRFLTGSSGKLNREVALKPVSSSA----SFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPRKCQPRPPFSSSTACPPNEVGVP 572
            A+K+ FL G   ++++ +A  PV S +    +   +  +  W PG   P +L+GSLPGD GFDPLGL  DPE+LKW  QAELV+SRWAMLG  G+ +PE  TKIG++N P WY AG+ EYF  ++TLFVIE +L  + E RRW DI  P  C    P   +      +VG P
Sbjct:   29 ATKASFLGGKRLRVSKFIA--PVGSRSVAVSAVAADPDRPLWFPGSTPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGVLNTPSWYTAGEQEYFTDTTTLFVIELVLIGWAEGRRWADIIKP-GCVNTDPIFPNNKLTGTDVGYP 197          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB12_SOLLC (Chlorophyll a-b binding protein 7, chloroplastic OS=Solanum lycopersicum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 4.877e-36
Identity = 76/169 (44.97%), Postives = 102/169 (60.36%), Query Frame = 3
Query:   72 SKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGE--WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNPRKCQPRPPFSSSTACPPNEVGVP 572
            +K+ FL G   ++++        S+ +  V A      W PG   P +L+GSLPGD GFDPLGLA DPE+L+W  QAELV+ RWAMLG  G+ +PE+ TKIGI+N P WY AG+ EYF  ++TLF++E +L  + E RRW DI  P  C    P   +      +VG P
Sbjct:   30 TKASFLGGRRLRVSKYSTTPTARSATTVCVAADPDRPLWFPGSTPPPWLDGSLPGDFGFDPLGLASDPESLRWNQQAELVHCRWAMLGAAGIFIPELLTKIGILNTPSWYTAGEQEYFTDTTTLFIVELVLIGWAEGRRWADIIKP-GCVNTDPIFPNNKLTGTDVGYP 197          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB4_SPIOL (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 3.511e-18
Identity = 51/122 (41.80%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  165 AKKGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 503
            A K  W+P +        P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAML V+G+ + + +T I       W++AG    A    S  TL   + +L  +VE +RW D  +P
Sbjct:   55 APKKSWIPAVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVGQAWTGI------PWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDP 170          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB4A_SOLLC (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.586e-18
Identity = 64/171 (37.43%), Postives = 90/171 (52.63%), Query Frame = 3
Query:   45 SAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSAS-------FKV--EAKKGEWLPG------LASPTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 503
            SAAV    +S   FLTG  G  ++ +   P+++          F V   A K  W+P       L  P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAM  V+G+ + + ++ I       W++AG    A    S  TL   + IL  +VE +RW D  +P
Sbjct:    5 SAAVLNGLSSS--FLTG--GNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDP 165          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 4.586e-18
Identity = 63/180 (35.00%), Postives = 93/180 (51.67%), Query Frame = 3
Query:   15 LNMATVTTQASAAVFRPCASKSRFLTGSSGKLNREVALKPVSSSASFKVEAKKGEWLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ-----WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 503
            ++ ++++T A AA     +  S+ +T  +  + R  +  PV   A+ ++      W     S +YL+G LPGD GFDPLGL+ DPE        KW    E++N R+AMLG  G + PE+  K G+I  PQ     W+       AG   Y+A + TLFV+E  L  + E RR+QD   P
Sbjct:    7 ISSSSISTSAEAARQIIGSRISQSVTRKASFVVRAASTPPVKQGANRQL------WFASKQSLSYLDGRLPGDFGFDPLGLS-DPEGTGGFIEPKWLAYGEVINGRFAMLGAAGAIAPEILGKAGLI--PQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKP 177          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.334e-17
Identity = 54/125 (43.20%), Postives = 70/125 (56.00%), Query Frame = 3
Query:  180 WLPGLASPTYLNGSLPGDNGFDPLGLAEDPENL------KWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQ-----WYD------AGKAEYFASSSTLFVIEFILFHYVEIRRWQDIKNP 503
            W     S +YL+GSLPGD GFDPLGL+ DPE        +W    E++N R+AMLG VG + PE   K+G+I  PQ     W+       AG   Y+A + TLFV+E  L  + E RR+QD   P
Sbjct:   58 WFASKQSLSYLDGSLPGDYGFDPLGLS-DPEGTGGFIEPRWLAYGEVINGRFAMLGAVGAIAPEYLGKVGLI--PQETALAWFQTGVIPPAGTYNYWADNYTLFVLEMALMGFAEHRRFQDWAKP 179          
BLAST of DY260306 vs. ExPASy Swiss-Prot
Match: CB4B_SOLLC (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum GN=CAP10B PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.882e-17
Identity = 62/170 (36.47%), Postives = 91/170 (53.53%), Query Frame = 3
Query:   30 VTTQASAAVFRPCASKSRFLTG---SSGKLNREVALKPVSSSASFKVEAK----KGEWLPGLAS------PTYLNGSLPGDNGFDPLGLAEDPENLKWYVQAELVNSRWAMLGVVGMLLPEVFTKIGIINVPQWYDAGK---AEYFASSSTLFVIEFILFHYVEIRRWQD 491
            +TT ++ AV    +S   FLTG   +   L   V  + V++   F V A     K  W+P + S      P +L+GSLPGD GFDPLGL +DP  LKWY +AEL++ RWAM  V+G+ + + ++ I       W++AG    A    S  +L   + +L  +VE +RW D
Sbjct:    1 MTTTSATAVLNGLSSS--FLTGGKKTQALLGAHVTAR-VTTPKRFVVAAAAVAPKKSWIPAVKSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWSGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVD 161          
The following BLAST results are available for this feature:
BLAST of DY260306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
CB24_ARATH1.003e-8171.63Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB24_PEA1.109e-8073.36Chlorophyll a-b binding protein P4, chloroplastic ... [more]
CB120_HORVU9.177e-4349.75Chlorophyll a-b binding protein 1B-20, chloroplast... [more]
CB12_PETHY1.980e-3746.51Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB12_SOLLC4.877e-3644.97Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB4_SPIOL3.511e-1841.80Chlorophyll a-b binding protein CP24, chloroplasti... [more]
CB4A_SOLLC4.586e-1837.43Chlorophyll a-b binding protein CP24 10A, chloropl... [more]
CB13_SOLLC4.586e-1835.00Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.334e-1743.20Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB4B_SOLLC3.882e-1736.47Chlorophyll a-b binding protein CP24 10B, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB14FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260306 ID=DY260306; Name=DY260306; organism=Citrus clementina; type=EST; length=1268bp
CATAACTCTCGTCCTTAAACATGGCAACCGTCACAACACAAGCCTCGGCC
GCCGTGTTCCGGCCATGCGCATCCAAATCCAGGTTCCTTACTGGGTCTTC
GGGTAAATTAAATAGGGAAGTGGCCTTGAAACCAGTGAGCTCAAGCGCTT
CTTTCAAAGTTGAAGCCAAGAAGGGGGAGTGGTTACCGGGCTTGGCCTCA
CCAACTTACCTCAACGGCAGCCTCCCCGGTGACAATGGATTTGACCCCTT
GGGGCTTGCCGAGGATCCTGAGAACTTGAAGTGGTATGTGCAAGCCGAGC
TTGTGAATTCGCGCTGGGCCATGTTGGGTGTTGTTGGAATGTTGTTGCCC
GAAGTTTTCACAAAGATTGGAATTATTAATGTTCCTCAATGGTATGATGC
TGGGAAGGCTGAGTACTTTGCATCATCATCGACCCTTTTCGTGATCGAGT
TCATCTTGTTCCACTATGTGGAGATAAGAAGATGGCAAGACATAAAGAAC
CCCAGGAAGTGTCAACCAAGACCCCCATTTTCAAGCAGTACAGCTTGCCC
TCCAAACGAAGTTGGGGTACCCCGGTGGCATCTTCAACCCCCCAAACTTG
CACCCCCTGATGAAGCAAAGGAGAACGAACCTTGCCAATCGGAAATTGGC
AATCTTCGGCATTCCTGGGAATTATCTGTTCCACCACAATGTCCCCAGCA
CAGGGCCCATTAGAAACACCTCCTGAAACACATCATTGAAACCCCAGGGC
CCACTCCCCATCGTCCCAACACTAAGTGCGTTATTTCACCCCCAAAACAG
ACCTAGTTCACTTCGAGATCTTCTGTCTTCTCTTTATGAAAACCCCACAT
CTCCTACAACTTTCCGATCTCAACTCCCACCACACTCTCACCCCCCTCAC
TCACCACTCTCATCCTCTCAACCCCCCAACCCTCCTAAGACTACCTCCAC
TTAGCCATATTATACCAACTCAATAAATACACAACTATACACTACACCCC
TACCCCTATCTCACCCAAACCATCCAACCTACCAAACAAGACATCATTCC
CACCCCCCAACACAACTTTTCTATTGTCTCTACAACACTCTCCCTAAGCC
TACCCTCATATCCTAACATCAGTCTATCAATTCACCACTCACACCTCTCA
CAACCCACACTCATACCCACTACCACTACAAAAACATCCCGAACAATCCA
CCTTACCAACACTATTCAATCTCTCATCCTAATAACTCCAAATTAACATT
TACTCTGCATCCCTCCCG
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