DY260307

Overview
NameDY260307
Unique NameDY260307
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1247
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14854 contig Ccv1_Contig14854:497..1743. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_CITLA (Cysteine synthase OS=Citrullus lanatus PE=2 SV=1)

HSP 1 Score: 271.552 bits (693), Expect = 7.037e-72
Identity = 139/204 (68.14%), Postives = 162/204 (79.41%), Query Frame = 3
Query:  108 KCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYG 719
            K  I KDVTELIG+TP+VYLN VVDGCVAR+AAKLEMM+PCSSVKDRI YSMI DAE+KGLITPG++VLIE TSGNTGIGLAFIAA++GY+LII MP++ S+ERR ILRA GAE+ L DPA G +G V+K EEI  +TPN YIL  FENPANP+I YETTGP+IW  SGGK+DA  S            G  LK++ PNIK+YG
Sbjct:    5 KSTIAKDVTELIGNTPLVYLNRVVDGCVARVAAKLEMMEPCSSVKDRIGYSMISDAENKGLITPGESVLIEPTSGNTGIGLAFIAAAKGYRLIICMPASMSLERRTILRAFGAELVLTDPARGMKGAVQKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWRGSGGKIDALVSGIGTGGTVTGA-GKYLKEQNPNIKLYG 207          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_SOLTU (Cysteine synthase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 5.576e-69
Identity = 133/205 (64.88%), Postives = 159/205 (77.56%), Query Frame = 3
Query:  105 DKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYG 719
            +K  I KDVTELIG+TP+VYLNNVVDGCVAR+AAKLE M+PCSSVKDRI YSMI DAE+KGLI PG++VLIE TSGNTG+GLAF+AA++GYKLII MPS+ S+ERRIILR   +E+ L DPA G +G + K EEI  +TPN YIL  FENPANP+I YETTGP+IW  S GKVDA  S            G  L+++ PN+K+YG
Sbjct:    4 EKIGIAKDVTELIGNTPLVYLNNVVDGCVARVAAKLESMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGVGLAFMAAAKGYKLIITMPSSMSLERRIILRGFRSELVLTDPAKGMKGAISKAEEIKAKTPNSYILQQFENPANPKIHYETTGPEIWKGSNGKVDALASGIGTGGTITG-SGKYLREQNPNVKLYG 207          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_SPIOL (Cysteine synthase OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 1.622e-68
Identity = 132/207 (63.77%), Postives = 160/207 (77.29%), Query Frame = 3
Query:   99 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYG 719
            +E+K  I KDVTELIG TP+VYLN V DGCVAR+AAKLE M+PCSSVKDRI +SMI DAE  GLITPG++VLIE TSGNTGIGLAFIAA++GYKLII MP++ S+ERR ILRA GAE+ L DPA G +G V+K EEI ++TPN YIL  FENPANP++ YETTGP+IW  +GGK+D F S            G  LK++ P++K+ G
Sbjct:    2 VEEKAFIAKDVTELIGKTPLVYLNTVADGCVARVAAKLEGMEPCSSVKDRIGFSMITDAEKSGLITPGESVLIEPTSGNTGIGLAFIAAAKGYKLIITMPASMSLERRTILRAFGAELILTDPAKGMKGAVQKAEEIRDKTPNSYILQQFENPANPKVHYETTGPEIWKGTGGKIDIFVSGIGTGGTITGA-GKYLKEQNPDVKLIG 207          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK1_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 2.119e-68
Identity = 129/201 (64.18%), Postives = 156/201 (77.61%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYG 719
            I KDVTELIG+TP+VYLNNV +GCV R+AAKLEMM+PCSSVKDRI +SMI DAE KGLI PG++VLIE TSGNTG+GLAF AA++GYKLII MP++ S+ERRIIL A G E+ L DPA G +G + K EEIL +TPNGY+L  FENPANP+I YETTGP+IW  + GK+D F S            G  LK++ PN+K+YG
Sbjct:    5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEQKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSVERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTDGKIDGFVSGIGTGGTITGA-GKYLKEQNPNVKLYG 204          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSKP_CAPAN (Cysteine synthase, chloroplastic/chromoplastic OS=Capsicum annuum PE=2 SV=1)

HSP 1 Score: 259.225 bits (661), Expect = 3.614e-68
Identity = 130/205 (63.41%), Postives = 160/205 (78.05%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYGNKTT 731
            I +DVT+LIG+TPMVYLN +V GCVA IAAKLE+M+PC SVKDRI +SMI DAE+KGLI+PGKTVL+E TSGNTGIGLAFIAASRGYKLI+ MP++ S+ERR+IL+A GAE+ L DPA G +G V K EEILN TP+ YIL  F+NPANP+I YETTGP+IW D+ GK+D   +        +   G  LK++ PNIK+ G + T
Sbjct:   67 IAEDVTQLIGNTPMVYLNTIVKGCVANIAAKLEIMEPCCSVKDRIGFSMISDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKGMKGAVSKAEEILNNTPDAYILQQFDNPANPKIHYETTGPEIWEDTKGKIDILVAGIGTGGTISG-TGRYLKEKNPNIKIIGVEPT 270          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK1_ARATH (Cysteine synthase OS=Arabidopsis thaliana GN=OASA1 PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 1.052e-67
Identity = 129/201 (64.18%), Postives = 155/201 (77.11%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYG 719
            I KDVTELIG+TP+VYLNNV +GCV R+AAKLEMM+PCSSVKDRI +SMI DAE KGLI PG++VLIE TSGNTG+GLAF AA++GYKLII MP++ S ERRIIL A G E+ L DPA G +G + K EEIL +TPNGY+L  FENPANP+I YETTGP+IW  +GGK+D F S            G  LK++  N+K+YG
Sbjct:    5 IAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGTGGTITGA-GKYLKEQNANVKLYG 204          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK2_BRAJU (Cysteine synthase OS=Brassica juncea PE=2 SV=1)

HSP 1 Score: 256.914 bits (655), Expect = 1.794e-67
Identity = 129/207 (62.32%), Postives = 157/207 (75.85%), Query Frame = 3
Query:   99 MEDKCEIKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYG 719
            M  +  I  DVTELIG+TP+VYLN+V +GCV R+AAKLEMM+PCSSVKDRI +SMI DAE KGLI PG++VLIE TSGNTG+GLAF AA++GYKLII MP++ SIERRIIL A G E+ L DPA G +G + K EEIL +TPNGY+L  FENPANP+I YETTGP+IW  + GK+D F S            G  LK++ PN+K+YG
Sbjct:    1 MASRIGIANDVTELIGNTPLVYLNSVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSIERRIILLAFGVELVLTDPAKGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTEGKIDGFISGIGTGGTITGA-GKYLKEQNPNVKLYG 206          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSKP_SOLTU (Cysteine synthase, chloroplastic/chromoplastic OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 256.144 bits (653), Expect = 3.060e-67
Identity = 129/205 (62.93%), Postives = 158/205 (77.07%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYGNKTT 731
            I +DVT+LIG+TPMVYLN +  GCVA IAAKLE+M+PC SVKDRI +SMI DAE+KGLI+PGKTVL+E TSGNTGIGLAFIAASRGYKLI+ MP++ S+ERR+IL+A GAE+ L DPA G +G V K EEILN TP+ YIL  F+NPANP+I YETTGP+IW D+ GK+D   +            G  LK++ PNIK+ G + T
Sbjct:   69 IAEDVTQLIGNTPMVYLNTIAKGCVANIAAKLEIMEPCCSVKDRIGFSMIVDAEEKGLISPGKTVLVEPTSGNTGIGLAFIAASRGYKLILTMPASMSLERRVILKAFGAELVLTDPAKGMKGAVSKAEEILNNTPDAYILQQFDNPANPKIHYETTGPEIWEDTKGKIDILVAGIGTGGTITG-TGRFLKEQNPNIKIIGVEPT 272          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK1_ORYSJ (Cysteine synthase OS=Oryza sativa subsp. japonica GN=RCS1 PE=2 SV=2)

HSP 1 Score: 253.832 bits (647), Expect = 1.518e-66
Identity = 126/201 (62.69%), Postives = 157/201 (78.11%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYG 719
            I KDVTELIG+TP+VYLN V DGCV R+AAKLE M+PCSSVKDRI YSMI DAE+KGLITPGK+VLIE TSGNTGIGLAF+AA++GY+L++ MP++ S+ERRIIL+A GAE+ L DP +G +G V+K EE+  +T N +IL  FENPANP+I YETTGP+IW  +GGKVD   S            G  L+++ P+IK+YG
Sbjct:    5 IAKDVTELIGNTPLVYLNRVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGLITPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLGMKGAVQKAEELAAKTNNSFILQQFENPANPKIHYETTGPEIWKGTGGKVDGLVSGIGTGGTITGA-GRYLREQNPDIKIYG 204          
BLAST of DY260307 vs. ExPASy Swiss-Prot
Match: CYSK_WHEAT (Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=2 SV=1)

HSP 1 Score: 253.447 bits (646), Expect = 1.983e-66
Identity = 126/205 (61.46%), Postives = 157/205 (76.59%), Query Frame = 3
Query:  117 IKKDVTELIGHTPMVYLNNVVDGCVARIAAKLEMMQPCSSVKDRIAYSMIKDAEDKGLITPGKTVLIELTSGNTGIGLAFIAASRGYKLIIIMPSTYSIERRIILRALGAEVYLADPAVGFEGFVKKGEEILNRTPNGYILGPFENPANPEIPYETTGPKIWNDSGGKVDAFYSRDRNPWYCNWCRGDSLKKRTPNIKVYGNKTT 731
            I KDVTELIG+TP+VYLN V DGCV R+AAKLE M+PCSSVKDRI YSMI DAE+KG I PGK+VLIE TSGNTGIGLAF+AA++GY+L++ MP++ S+ERRIIL+A GAE+ L DP +G +G V+K EE+  +TPN YIL  FEN ANP+I YETTGP+IW  +GGK+D   S            G  L+++ PNIK+YG + T
Sbjct:    9 IAKDVTELIGNTPLVYLNKVTDGCVGRVAAKLESMEPCSSVKDRIGYSMITDAEEKGFIVPGKSVLIEPTSGNTGIGLAFMAAAKGYRLVLTMPASMSMERRIILKAFGAELILTDPLLGMKGAVQKAEELAAKTPNSYILQQFENAANPKIHYETTGPEIWKGTGGKIDGLVSGIGTGGTITG-TGKYLQEQNPNIKLYGVEPT 212          
The following BLAST results are available for this feature:
BLAST of DY260307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
CYSK_CITLA7.037e-7268.14Cysteine synthase OS=Citrullus lanatus PE=2 SV=1[more]
CYSK_SOLTU5.576e-6964.88Cysteine synthase OS=Solanum tuberosum PE=2 SV=1[more]
CYSK_SPIOL1.622e-6863.77Cysteine synthase OS=Spinacia oleracea PE=1 SV=1[more]
CYSK1_BRAJU2.119e-6864.18Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSKP_CAPAN3.614e-6863.41Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK1_ARATH1.052e-6764.18Cysteine synthase OS=Arabidopsis thaliana GN=OASA1... [more]
CYSK2_BRAJU1.794e-6762.32Cysteine synthase OS=Brassica juncea PE=2 SV=1[more]
CYSKP_SOLTU3.060e-6762.93Cysteine synthase, chloroplastic/chromoplastic OS=... [more]
CYSK1_ORYSJ1.518e-6662.69Cysteine synthase OS=Oryza sativa subsp. japonica ... [more]
CYSK_WHEAT1.983e-6661.46Cysteine synthase OS=Triticum aestivum GN=CYS1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAP12YB15FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260307 ID=DY260307; Name=DY260307; organism=Citrus clementina; type=EST; length=1247bp
CAGAGAAAAGGTTACATCAGGAACTGGTATCTCCATTCAAACTGCCAAGT
GCTAGGCTGGCTGCTTGATTTTTTGAAAGTTTTTGGTGAAGTAGCTCCAT
GGAGGACAAGTGTGAAATTAAGAAAGACGTTACGGAATTAATAGGCCATA
CACCAATGGTGTATCTCAATAATGTTGTGGATGGTTGTGTCGCCCGTATT
GCTGCCAAGCTAGAAATGATGCAACCTTGCTCTAGCGTCAAAGACAGAAT
TGCATATAGTATGATCAAAGATGCAGAGGATAAGGGCTTAATAACCCCAG
GGAAGACTGTCCTCATTGAGCTAACTAGTGGAAACACCGGCATTGGATTG
GCCTTCATTGCAGCATCAAGGGGTTACAAACTTATCATTATAATGCCATC
AACATACAGTATTGAGAGAAGAATAATTCTCAGAGCTTTGGGAGCTGAGG
TTTATCTTGCAGATCCAGCAGTGGGCTTTGAGGGGTTTGTTAAAAAGGGT
GAGGAGATACTAAACAGAACACCTAATGGTTATATTCTTGGACCATTTGA
AAATCCCGCGAATCCCGAGATTCCTTACGAGACAACTGGCCCAAAGATAT
GGAACGACTCCGGAGGGAAGGTTGATGCTTTTTATAGCAGGGATAGGAAC
CCGTGGTACTGTAACTGGTGCCGGGGAGATTCCTTAAAGAAAAGAACCCC
AAATATTAAGGTATATGGGAATAAAACCACCTGAAAGTGCAGTCCTGAAT
GGAAGGACCACCTGGGAAACCCTCCGAACCCAGGGAATTGGTGCCCGGGT
CCTCCCTCCCGTTTTTGACCTTCCCCAGCCCCCACAAATTCATTACCGTA
ATCCAGTGGGGAAACCCCATTGAAACTCTCTAACCCGCCTCGCCCCGAAC
GGAAGGCTTTGCCGGGTTTGGAAAATTCTCTCGCGACCCCCCCAACCGGC
CCCCCCCCAATACAAAAAACCACAAAAAGGCCTCACAACCCCCGCGGAAC
ATACCCCTTGCCTGCATTACTTCCCCCCCCTGTCCGCGCGACCCCGCTTA
ACCATCCCCCCACCCAGCATCCTCCTACCCCCCCTCCAACCACCCGAACC
CGACAAAACATACCCCTCCATTACCCATTCACAGATACACCACCACCATC
CTGATACTTCGCAACACCCTTCCCCCTACCGAGATATTCGTGACAAATAA
AAGCAACCACCGCCCCGTCTCTTTCTTACAACCACGTAAACCACGGT
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