DY260308

Overview
NameDY260308
Unique NameDY260308
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1162
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of DY260308 vs. ExPASy Swiss-Prot
Match: YG41_SCHPO (Uncharacterized RNA-binding protein C23E6.01c OS=Schizosaccharomyces pombe GN=SPBC23E6.01c PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 1.231e-14
Identity = 38/71 (53.52%), Postives = 50/71 (70.42%), Query Frame = 2 
Query:  389 IFVGGLDPSVTDDILKTVFGQYGELVHVKLPVGKRCGFVQFAKRTCAEQALSVLNGTPLGGQSIRQSWGRS 601
            +FVGGL   V+++ LK +F  +GE+V+VK+P GK CGFVQF  R  AE A++ L G PLG   IR SWGR+
Sbjct:  305 VFVGGLSKFVSEEELKYLFQNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGRN 375
[Close]
BLAST of DY260308 vs. ExPASy Swiss-Prot
Match: NAM8_YEAST (Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.160e-14
Identity = 37/76 (48.68%), Postives = 52/76 (68.42%), Query Frame = 2 
Query:  389 IFVGGLDPSVTDDILKTVFGQYGELVHVKLPVGKRCGFVQFAKRTCAEQALSVLNGTPLGGQSIRQSWGRSSFKQT 616
            +F+GGL   VT+D L+  F  +G +V+VK+PVGK CGFVQ+  R  AE A++ + G P+    +R SWGRS+ KQT
Sbjct:  315 VFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAGMQGFPIANSRVRLSWGRSA-KQT 389

HSP 2 Score: 21.557 bits (44), Expect = 2.160e-14
Identity = 10/22 (45.45%), Postives = 10/22 (45.45%), Query Frame = 1 
Query:  250 FAAPYQNTQGSRGENDPNNTTV 315
            F  P Q         DPNNTTV
Sbjct:  294 FIYPVQQQPSLNHFTDPNNTTV 315
[Close]
BLAST of DY260308 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 3.351e-12
Identity = 34/72 (47.22%), Postives = 49/72 (68.06%), Query Frame = 2 
Query:  389 IFVGGLDPSVTDDILKTVFGQYGELVHVKLPVGKRCGFVQFAKRTCAEQALSVLNGTPLGGQSIRQSWGRSS 604
            +FVGGL P  T+  L+++F  +G +++V++P GK CGFV+F KR  AE ++  L G  +GG  IR SWGR S
Sbjct:  362 VFVGGLVPKTTEFQLRSLFKPFGPILNVRIPNGKNCGFVKFEKRIDAEASIQGLQGFIVGGSPIRLSWGRPS 433
The following BLAST results are available for this feature:
BLAST of DY260308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
YG41_SCHPO1.231e-1453.52Uncharacterized RNA-binding protein C23E6.01c OS=S... [more]
NAM8_YEAST2.160e-1448.68Protein NAM8 OS=Saccharomyces cerevisiae GN=NAM8 P... [more]
NGR1_YEAST3.351e-1247.22Negative growth regulatory protein NGR1 OS=Sacchar... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YB16FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260308 ID=DY260308; Name=DY260308; organism=Citrus clementina; type=EST; length=1162bp
CTTACAATCAAATTAATCGTTAGTGTTTGTTATTTACAAATAACAAGTCT
TCTCGGTTTGATGTGTGATTGTAATAATGCTGAGATCACCATGTAAGACC
TTCAAAAATGTTCATCATGTTTAGTCATTTGAATGTGTGAAAATAAATGT
GGTTTGGAAATGACAGAACAGTTACATGCCTAGGCATGTGGGGACAGGAA
TTCTGGTTAAGAACCTTGCTTTATGTATGTTCCTGACATATATTTGTCAT
TTGCAGCTCCTTATCAGAATACCCAAGGAAGCCGCGGCGAGAATGATCCA
AATAATACAACAGTGCGTAGTTTATTTTAAGTTGATACTAGTTAAGTTGT
TGCTATACTTGAGTGACATTTCAACCTCTTGAGTGCAGATATTTGTTGGG
GGTTTGGATCCTAGTGTTACAGATGACATTTTGAAAACAGTTTTTGGTCA
ATATGGTGAGTTAGTTCATGTGAAATTACCAGTGGGCAAGCGCTGCGGGT
TTGTTCAGTTTGCTAAGAGAACTTGTGCGGAGCAAGCGCTATCAGTTTTG
AATGGCACCCCATTAGGAGGACAAAGCATTAGACAGTCATGGGGGCGTAG
TTCCTTCAAACAAACCGGTAATGTGATCATCCTCCAGTATTTTCCCCATT
CATGGGCAAAGTCACTGAATTTCCTTCAAAATGATGCCCTGAAGTTCCGG
GAAAATCCGTTTGTTCCTTTTCCCAAGCTTTGGAACAAAATCTGGAACAC
CCCGTCCTCCCTTTTACCTTGCCCAGGAATTAACCAACCCCGGTAAAAAA
AATTCCGAATGTGTTCCCCGGGCAACATACAGGAACCTTTCCTTTTTCCC
CTTTCAAAAATTCTTCCGAATCCTCGGGAAAAAAGGCCCGGAAAATAATT
GCCCCGGCGCCCCCCCTTTTCCTTAAACCCCCCCCAAAAAAACTTTACCT
TAAAAAGAAAACAAAAAAAACAAACCCCCCCTTTCTCTTTCAAAAAGTCG
CCCTTTTAAAAAAAAACACTTTTTATTTACATCTTTTTTTCACCACACAC
AAGCTCCTCCTCTAACGTACCAAACAAAACACTCTTTTTTGTCCCTCCCC
CCTTCAAAAATCCCCCCACCCACCAGTATCGCTCCTCCTAATTGCAGACC
TCACCCCTCCTT
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