DY260321

Overview
NameDY260321
Unique NameDY260321
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length1207
Libraries
Library NameType
Fruit-TFcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DY260321 vs. ExPASy Swiss-Prot
Match: PSC13_MAIZE (Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 7.098e-29
Identity = 61/137 (44.53%), Postives = 89/137 (64.96%), Query Frame = 2
Query:  167 PNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPLSGCAEVLRLYQEED 577
            PN   + ++GRVYCDTC+AGF T  T YIAGAKV++ECK   + ++  + +G TD+TGTY I + + H++ +C  VL++SP+ DC  V   R+R+ V+LT   GIS   R AN +G+ K  PL  CA +L+    +D
Sbjct:   30 PNLPDYVIQGRVYCDTCRAGFVTNVTEYIAGAKVRLECKHFGTGKLERAIDGVTDATGTYTIELKDSHEEDICQVVLVASPRKDCDEVQALRDRAGVLLTRNVGISDSLRPANPLGYFKDVPLPVCAALLKQLDSDD 166          
BLAST of DY260321 vs. ExPASy Swiss-Prot
Match: OLEE1_BETVE (Olee1-like protein OS=Betula verrucosa PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.895e-27
Identity = 57/129 (44.19%), Postives = 85/129 (65.89%), Query Frame = 2
Query:  182 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPG---RERSRVILTSYNGISSETRYANSMGFMKAEPLSGCAEVLR 559
            F VEG+VYCD C+  F T  +TY+ GAKV +EC++R+   ++YS + +TD +GTY+I V  DH++++C+  L  S   DC  V+     ++ +R+ LT  NGIS+  R AN +GFMK +PL  CA+ LR
Sbjct:   27 FFVEGKVYCDNCRTQFVTKLSTYMKGAKVSLECRNREGGTLIYSSDSETDKSGTYRIPVDGDHEEEICEIALKKSSDPDCSEVSKDPFLKKSARISLTKNNGISTPVRLANPLGFMKKKPLPECAKALR 155          
BLAST of DY260321 vs. ExPASy Swiss-Prot
Match: LAT52_SOLLC (Anther-specific protein LAT52 OS=Solanum lycopersicum GN=LAT52 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 2.137e-25
Identity = 52/125 (41.60%), Postives = 79/125 (63.20%), Query Frame = 2
Query:  182 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPLSGCAEVL 556
            F VEG+VYCDTC+  FET  +  + GA VK++C++  +    +S EG TD  G YK+ V+ DH++ +C+  ++ SP+ DCK    G E++R+  +   GI +  R+AN + FMKAE + GC E L
Sbjct:   27 FDVEGKVYCDTCRVQFETKLSENLEGATVKLQCRNISTEAETFSVEGVTDKDGKYKLTVNGDHENDICEVTVVKSPREDCKESVSGYEKARIECSDNVGIHNAVRFANPLFFMKAESVQGCKEAL 151          
BLAST of DY260321 vs. ExPASy Swiss-Prot
Match: PHLB_PHLPR (Pollen allergen Phl p 11 OS=Phleum pratense PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 2.791e-25
Identity = 57/133 (42.86%), Postives = 77/133 (57.89%), Query Frame = 2
Query:  182 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPLSGCAEVLRLYQEED 577
            F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS NGI  +  RYAN + F + EPL  C  +L+ Y   D
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVQGATVAVDCRPFNGGESKLKAEATTDGLGWYKIEIDQDHQEEICEVVLAKSPDTTCSEIEEFRDRARVPLTSNNGIKQQGIRYANPIAFFRKEPLKECGGILQAYDLRD 138          
BLAST of DY260321 vs. ExPASy Swiss-Prot
Match: LOLB_LOLPR (Major pollen allergen Lol p 11 OS=Lolium perenne PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 4.030e-24
Identity = 55/129 (42.64%), Postives = 75/129 (58.14%), Query Frame = 2
Query:  182 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSE-TRYANSMGFMKAEPLSGCAEVLRLY 565
            F V GRVYCD C+AGFET  +  + GA V V+C+     +     E  TD  G YKI + +DHQ+++C+ VL  SP   C  +   R+R+RV LTS  GI  +  RYAN + F + EPL  C  +L+ Y
Sbjct:    6 FVVTGRVYCDPCRAGFETNVSHNVEGATVAVDCRPFDGGESKLKAEATTDKDGWYKIEIDQDHQEEICEVVLAKSPDKSCSEIEEFRDRARVPLTSNXGIKQQGIRYANPIAFFRKEPLKECGGILQAY 134          
BLAST of DY260321 vs. ExPASy Swiss-Prot
Match: CHE1_CHEAL (Pollen allergen Che a 1 OS=Chenopodium album PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 4.456e-23
Identity = 55/136 (40.44%), Postives = 82/136 (60.29%), Query Frame = 2
Query:  182 FSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAP---GRERSRVILTSYNGISSETRYANSMGFMKAEPLSGCAEVLRLYQEEDV 580
            F V+G VYCDTC+  F T  +T + GA VK+EC++  +    +  E  TD  G Y I V+ D +D +C+  L+ SP ++C  V+     ++ ++V LTS NG +S+ R AN++GFM+ EPL  C EVL+     DV
Sbjct:   30 FKVQGMVYCDTCRIQFMTRISTIMEGATVKLECRNITAGTQTFKAEAVTDKVGQYSIPVNGDFEDDICEIELVKSPNSECSEVSHDVYAKQSAKVSLTSNNGEASDIRSANALGFMRKEPLKECPEVLKELDLYDV 165          
BLAST of DY260321 vs. ExPASy Swiss-Prot
Match: ALL1_OLEEU (Major pollen allergen OS=Olea europaea PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 8.404e-22
Identity = 47/130 (36.15%), Postives = 76/130 (58.46%), Query Frame = 2
Query:  164 RPNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPLSGCAEV 553
            +P    F ++G+VYCDTC+AGF T  + +I GA ++++CKD+++  V ++  G T + G Y +LV  DH+++ C+  LISS + DC  +         +    N ++  TR  N +GF K E L  CA+V
Sbjct:    5 QPPVSQFHIQGQVYCDTCRAGFITELSEFIPGASLRLQCKDKENGDVTFTEVGYTRAEGLYSMLVERDHKNEFCEITLISSGRKDCNEIPTEGWAKPSLKFKLNTVNGTTRTVNPLGFFKKEALPKCAQV 134          
BLAST of DY260321 vs. ExPASy Swiss-Prot
Match: LIGV1_LIGVU (Major pollen allergen Lig v 1 OS=Ligustrum vulgare PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 1.752e-19
Identity = 45/130 (34.62%), Postives = 75/130 (57.69%), Query Frame = 2
Query:  164 RPNTKPFSVEGRVYCDTCQAGFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTVAPGRERSRVILTSYNGISSETRYANSMGFMKAEPLSGCAEV 553
            +P    F ++G+VYCDTC+A F T  + +I GA V+++CKD ++ +V ++  G T + G Y +L+  DH+++ C+  LISS + DC  +         +    N ++  TR  N +GF+K E L  C +V
Sbjct:    5 QPPVSQFYIQGQVYCDTCRARFITELSEFIPGAGVRLQCKDGENGKVTFTEVGYTKAEGLYNMLIERDHKNEFCEITLISSSRKDCDEIPTEGWVKPSLKFVLNTVNGTTRTINPLGFLKKEVLPKCPQV 134          
BLAST of DY260321 vs. ExPASy Swiss-Prot
Match: PLAL1_PLALA (Major pollen allergen Pla l 1 OS=Plantago lanceolata PE=1 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 3.913e-11
Identity = 43/126 (34.13%), Postives = 68/126 (53.97%), Query Frame = 2
Query:  182 FSVEGRVYCDTCQA-GFETPATTYIAGAKVKVECKDRKSMQVVYSREGKTDSTGTYKILVSEDHQDQLCDAVLISSPQNDCKTV---APGR-ERSRVILTSYNGISSETRYANSMGFMKAEPLSGC 544
            F VEG VYC+ C +       +  +AGA+V+++CKD  S +V+YS  G+TD  G Y++ V   H+D  C+  L+ S + DC  +   A G  + S+V L+    I+ +TR+   + F       GC
Sbjct:    9 FHVEGEVYCNVCHSRNLINELSERMAGAQVQLDCKD-DSKKVIYSIGGETDQDGVYRLPVVGYHED--CEIKLVKSSRPDCSEIPKLAKGTIQTSKVDLSKNTTITEKTRHVKPLSFRAKTDAPGC 131          
The following BLAST results are available for this feature:
BLAST of DY260321 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
PSC13_MAIZE7.098e-2944.53Pollen-specific protein C13 OS=Zea mays GN=MGS1 PE... [more]
OLEE1_BETVE3.895e-2744.19Olee1-like protein OS=Betula verrucosa PE=2 SV=1[more]
LAT52_SOLLC2.137e-2541.60Anther-specific protein LAT52 OS=Solanum lycopersi... [more]
PHLB_PHLPR2.791e-2542.86Pollen allergen Phl p 11 OS=Phleum pratense PE=1 S... [more]
LOLB_LOLPR4.030e-2442.64Major pollen allergen Lol p 11 OS=Lolium perenne P... [more]
CHE1_CHEAL4.456e-2340.44Pollen allergen Che a 1 OS=Chenopodium album PE=1 ... [more]
ALL1_OLEEU8.404e-2236.15Major pollen allergen OS=Olea europaea PE=1 SV=2[more]
LIGV1_LIGVU1.752e-1934.62Major pollen allergen Lig v 1 OS=Ligustrum vulgare... [more]
PLAL1_PLALA3.913e-1134.13Major pollen allergen Pla l 1 OS=Plantago lanceola... [more]
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Properties
Property NameValue
Genbank descriptionKN0AAP12YC08FM1 Fruit-TF Citrus clementina cDNA 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DY260321 ID=DY260321; Name=DY260321; organism=Citrus clementina; type=EST; length=1207bp
GCCTTATATCACTCCCTCAGTGCGTGGTCCGCTTCTGTCTAGAATTCACT
CATTTGCTCTCAATATTCAATCTTGTTCAGCTTCCTTCATCTCCCATAAG
ACAATGGCTAGAACATTGTTGTTGATCGCTCTCTGCGTGCTGCCGGCTCT
GGTGAGCGCGGTCCGGCCCAACACTAAACCGTTCTCGGTTGAAGGACGCG
TGTACTGCGACACCTGCCAAGCCGGCTTTGAGACCCCCGCTACCACCTAC
ATCGCCGGTGCCAAGGTTAAGGTTGAATGCAAAGACAGGAAGTCAATGCA
AGTAGTATATAGCAGGGAAGGGAAAACAGACTCAACTGGAACATATAAGA
TCCTCGTTTCAGAAGACCATCAGGATCAACTTTGCGATGCTGTCCTCATT
AGTAGCCCCCAGAATGACTGCAAAACAGTTGCCCCAGGGCGTGAGCGTTC
CCGTGTGATCTTGACCAGTTACAACGGCATTTCTTCTGAAACCCGATATG
CCAATTCAATGGGCTTCATGAAGGCAGAGCCCCTGTCTGGCTGTGCTGAG
GTTCTCCGGCTATATCAGGAGGAGGATGTGTAGAGAATGGTGTGGCATGG
TTTTTTCCATCGCTTTCCATTTGTTTAAGCTTTGTGTTGCCTTATACTGT
CTCTTCCATTAATAGTGCCCGGATGGCTGTGTTGTTTCTATGTTTAAAGA
ATTCTTAATTTGTTGTTAAAGGACCCCTACCCTATTAATTTATTTATATC
CCGGTCCTTCCACCTAAAAAAAAAAAAAAAAAAAAAAAAAACCCCCTTTC
TCTGACAAATGGGCCATAAAAAAAAACCATCGTTTACCCTTTTTCGCCCC
CACCGCGCCCCCTCAGTCCAAAAAAACCTCTATTTCCCCACCCCCCGAAA
CCCCCACAACGAACCCAATAACCGGCCCCAAGCGGTTCCCTCAGCCCCCC
CCCCCCCCCCCTCCAAACTCTGAAGCCACCCCCCACACACAAACCCAACT
CCCCCCCCCTTAACAAACCCCCCCCCTCCCTCCCAATAAAACACCAACTA
TTTATCCTTTCCGCTAACACCACACCCCACCCATTTCCAAAACAAACCAC
CACTCTTTCCACTGAAAAACAAAACCCCACCCCCAACATACCCTCCCTCC
ACACCCACATCCCCCACTCCACCCCCGCCTCACTCACTCGCGCCCTCCTC
CCAATAC
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